Non-Coding RNA Search

Ss1.1-Pig4-TMW8040E24.5.5

Sequence:


               
               ATAGTGAGGAAGAGCTCCAGGCGAAGACTTCCTCTGTGCCCAGGCCGCCCGCCATGGCCG
TGAAAAAGGAGCCCAAAGAGGAACGAAGGGGCCCAAAGAAAGGGACAGCGGCTCTGGGCA
AAGCCAATAGACAAGTGTCCATCACCGGCTTCTTCCAGAGGAAGTGAGCTGCCGTCTCTG
TTAGGGCAGAGACGTGGAGTGGCCCAGGGCCAAGACCAAGACATACGGACTCTCACTTAC
TGTGTAAGTTCATCCAGCGCCTCACCTCGCCTCTGTCAAAAGACTGTTCTTCCTGTAAGG
TCTGTTCTTCCTTACAGAATCCTGTAAGGTTTCTGTGGTTTCTGGTTTTCAACCAAAAGG
AAATCGCCTGGAAGCAAGAGGCAAAAGAATATTTTAAAAGCTGTTATCTTCTGATGACCT
TTTTTGAGCACAACCTTTGACCTGTCCTGGAGGATTCCCTCCAAAAATAAATTGGAACAG
GTTTCAGAATGATCACTGAAGCCATTTAGTGGCTGATCCACTGTGCCCTACCCACCCTAT
GGCCCGATCCATCTGTTCCTGGCTCAGGAAGTGATCCTCTTGGTTCTTTGTGTTCTGTGG
CCTTGGGTGGGTACTCTTTTATGCCTGAATTTTACTGATGTGTTCACCACTGCCCCCCAC
CCTTCCCTTCCCCACCGCCGTAGTTCTGCGTGAAGCATTTTCTGTAAGTCTTTTAAATCT
TGGTTGGACTAAAGGCTGCAGCAGAAATCTCCCTTGTGCTCCTCTTGTCCTCCTTTGTAA
AGCGCGGGGACACCTGGCCACAGCCCCGCACGTTGCTCGTGTTCCAGCCCGGGCACAAAG
CGCTCGCTCTCTAGGCCTTCACTGGCGAGTCGCGGTTAGGGAACAGCCTCGGGCGGAGCA
CAGACAGAAGTGGAATGACGTGTTCAGCTCCACCGGAAATGACTCGAAGTCAGCACGGAT
GGTATCCGAGGCCTCGTCGTGTTGCCGACACAGGGTGTGTGGACACTGCTCTGGTTTTGG
TCTCCTCCCCCTCCCGTTCCCACTCTCGCTACCAGAGGTTCCCCTGACTGATGAAATGAA
GACTAACCAGAGCCGCCTCTGCTCCCACACCCTGTACAATAATTGAGCAGTGGTTCTCCT
TCCCAAGGACCCTGAATGTTCAGAAACAATCTAGTCCCGGAAGGAAATGAGGAAGAGATA
AAGCGTATCATCTCCAGATGTGGCTCCTCCGTCTTTTTAATTCCCCCCTCCCCCCCACCG
CCCCAAGGCTCCCCAAGAAGACAAGGAGAGACTGAGTCGTTGGTAGAGGTAAACATTTTC
ATTGGTTCCTTATGGAAAATCCTTTATTCCAGTGATAACTTGGAAGCGCCTTCCTTTATG
GCTGACAGCGAGCTCAGGGGCCGGAGGTGGCGTGACCGTGATCTTGCACAGTGAGCTCTG
GGGAGGGGAAGGCAGGCTCGGCGGCTGGCCTGACGCCCAGCGGACAGACGAGGGATGTCT
GACTCGCTCCTTGTTCCTTCCGCTCGGCCTGCTGTGTGTCGTCAATGATGCATTCGGCGT
CTACTGTTTAGGTTAGGACTGTGAATGACCTTGGATTAGCAGGAGCTGCTTTTGCAACTG
TCACCCAGGGCTCTCCAGCCAGCACCCCATGGCCTTGATTAAAACCAGAGGTTTGAGAGA
TGAGTCCCGGCATCGCGTCTGCGACTGGAGAAGGCAGAGGCTTTGCGCAGCAGGCTGCGT
GAAGGCTGACACGTTCCAAACCCCTTCCTTTTTAAAATGTAAAAGGGTGGAGAGAAGCGT
GGAAAGGCAGGTCTTAAACCTTTACAAAAAGCTGCTGGGGAAGAATCCTTTTAAATGGCT
ATTTTTGTCATCGCCTCTAGTCATTTTTCTAAGTAGAAATGGAAAGTTAAAGAAAAAAGC
AACAATTCAGTCTTTTTAAAAAATTATGCTGGGATCTTTAATAAAATCACATGTTGAATT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               ATAGTGAGGAAGAGCTCCAGGCGAAGACTTCCTCTGTGCCCAGGCCGCCCGCCATGGCCG
TGAAAAAGGAGCCCAAAGAGGAACGAAGGGGCCCAAAGAAAGGGACAGCGGCTCTGGGCA
AAGCCAATAGACAAGTGTCCATCACCGGCTTCTTCCAGAGGAAGTGAGCTGCCGTCTCTG
TTAGGGCAGAGACGTGGAGTGGCCCAGGGCCAAGACCAAGACATACGGACTCTCACTTAC
TGTGTAAGTTCATCCAGCGCCTCACCTCGCCTCTGTCAAAAGACTGTTCTTCCTGTAAGG
TCTGTTCTTCCTTACAGAATCCTGTAAGGTTTCTGTGGTTTCTGGTTTTCAACCAAAAGG
AAATCGCCTGGAAGCAAGAGGCAAAAGAATATTTTAAAAGCTGTTATCTTCTGATGACCT
TTTTTGAGCACAACCTTTGACCTGTCCTGGAGGATTCCCTCCAAAAATAAATTGGAACAG
GTTTCAGAATGATCACTGAAGCCATTTAGTGGCTGATCCACTGTGCCCTACCCACCCTAT
GGCCCGATCCATCTGTTCCTGGCTCAGGAAGTGATCCTCTTGGTTCTTTGTGTTCTGTGG
CCTTGGGTGGGTACTCTTTTATGCCTGAATTTTACTGATGTGTTCACCACTGCCCCCCAC
CCTTCCCTTCCCCACCGCCGTAGTTCTGCGTGAAGCATTTTCTGTAAGTCTTTTAAATCT
TGGTTGGACTAAAGGCTGCAGCAGAAATCTCCCTTGTGCTCCTCTTGTCCTCCTTTGTAA
AGCGCGGGGACACCTGGCCACAGCCCCGCACGTTGCTCGTGTTCCAGCCCGGGCACAAAG
CGCTCGCTCTCTAGGCCTTCACTGGCGAGTCGCGGTTAGGGAACAGCCTCGGGCGGAGCA
CAGACAGAAGTGGAATGACGTGTTCAGCTCCACCGGAAATGACTCGAAGTCAGCACGGAT
GGTATCCGAGGCCTCGTCGTGTTGCCGACACAGGGTGTGTGGACACTGCTCTGGTTTTGG
TCTCCTCCCCCTCCCGTTCCCACTCTCGCTACCAGAGGTTCCCCTGACTGATGAAATGAA
GACTAACCAGAGCCGCCTCTGCTCCCACACCCTGTACAATAATTGAGCAGTGGTTCTCCT
TCCCAAGGACCCTGAATGTTCAGAAACAATCTAGTCCCGGAAGGAAATGAGGAAGAGATA
AAGCGTATCATCTCCAGATGTGGCTCCTCCGTCTTTTTAATTCCCCCCTCCCCCCCACCG
CCCCAAGGCTCCCCAAGAAGACAAGGAGAGACTGAGTCGTTGGTAGAGGTAAACATTTTC
ATTGGTTCCTTATGGAAAATCCTTTATTCCAGTGATAACTTGGAAGCGCCTTCCTTTATG
GCTGACAGCGAGCTCAGGGGCCGGAGGTGGCGTGACCGTGATCTTGCACAGTGAGCTCTG
GGGAGGGGAAGGCAGGCTCGGCGGCTGGCCTGACGCCCAGCGGACAGACGAGGGATGTCT
GACTCGCTCCTTGTTCCTTCCGCTCGGCCTGCTGTGTGTCGTCAATGATGCATTCGGCGT
CTACTGTTTAGGTTAGGACTGTGAATGACCTTGGATTAGCAGGAGCTGCTTTTGCAACTG
TCACCCAGGGCTCTCCAGCCAGCACCCCATGGCCTTGATTAAAACCAGAGGTTTGAGAGA
TGAGTCCCGGCATCGCGTCTGCGACTGGAGAAGGCAGAGGCTTTGCGCAGCAGGCTGCGT
GAAGGCTGACACGTTCCAAACCCCTTCCTTTTTAAAATGTAAAAGGGTGGAGAGAAGCGT
GGAAAGGCAGGTCTTAAACCTTTACAAAAAGCTGCTGGGGAAGAATCCTTTTAAATGGCT
ATTTTTGTCATCGCCTCTAGTCATTTTTCTAAGTAGAAATGGAAAGTTAAAGAAAAAAGC
AACAATTCAGTCTTTTTAAAAAATTATGCTGGGATCTTTAATAAAATCACATGTTGAATT

Predicted RNA structure(s): 2 entry(ies)

More info

Predicted RNA structure(s): 2 entry(ies)

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               1-239, - strand, RNAz p=0.99494
               

               
               470-589, + strand, RNAz p=0.912615

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               1-239, - strand, RNAz p=0.99494
               

               
               470-589, + strand, RNAz p=0.912615

Homologous human UTR: 1 entry(ies)

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Homologous human UTR: 1 entry(ies)

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               3' of NM_006591, +

Homologous human UTR: 1 entry(ies)

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Human gene identifier and UTR site,
human gene reading direction


               
               3' of NM_006591, +

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               1-1204, gnl|bosTau2|chr15 (34681413-34680229)
               

               
               1-1204, gnl|Hg17|chr11 (74029293-74030453)
               

               
               1-1204, gnl|Mm7|chr7 (96130059-96129022)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-1204, gnl|bosTau2|chr15 (34681413-34680229)
               

               
               1-1204, gnl|Hg17|chr11 (74029293-74030453)
               

               
               1-1204, gnl|Mm7|chr7 (96130059-96129022)

Expressed library(ies): 8 entry(ies)

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Expressed library(ies): 8 entry(ies)

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               fbs (0.175346)
               

               
               eye (0.170503)
               

               
               cki (0.165235)
               

               
               sug (0.127291)
               

               
               thg (0.126791)
               

               
               tra (0.123092)
               

               
               cty (0.10408)
               

               
               eje (0.0988338)

Expressed library(ies): 8 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               fbs (0.175346)
               

               
               eye (0.170503)
               

               
               cki (0.165235)
               

               
               sug (0.127291)
               

               
               thg (0.126791)
               

               
               tra (0.123092)
               

               
               cty (0.10408)
               

               
               eje (0.0988338)

	1-239, - strand, RNAz p=0.99494
	470-589, + strand, RNAz p=0.912615

	1-1204, gnl\|bosTau2\|chr15 (34681413-34680229)
	1-1204, gnl\|Hg17\|chr11 (74029293-74030453)
	1-1204, gnl\|Mm7\|chr7 (96130059-96129022)

	fbs (0.175346)
	eye (0.170503)
	cki (0.165235)
	sug (0.127291)
	thg (0.126791)
	tra (0.123092)
	cty (0.10408)
	eje (0.0988338)