Non-Coding RNA Search

Ss1.1-Pig4-TMW8040F03.5

Sequence:


               
               TATTTCTCGCGTATCTCCGTGGCATCCAAGGGAACAGCATGGATCAAAGGCGTCTGCCGG
AAGACTCGCTCAATTCCCTGATTATTAAGCTGATCCAGGCAGATATTTTAAAAAACAAGC
TCTCCAAGCAGATGGTGGACCTTCAGGAAAATTACCAGAGCACCCTGCCCAAGTCGGAAT
TCCAGCCCGTGACGGCCGTGGGCCCCGAATGGCTGCGGCACCAGAGACGCTACAACTCCC
CCCGGGTCCTGCTGAGTGACAGCACCCCCTTGGAGCCCCCTCCCCTGTACCTCGTGGAGG
ATTATGTGGGCAACCCCTCCGTGGCCAACAGAACGGCGCGGCGGAAGAGGTACGCGGAGC
ACAAGAGTCACCGGGGGGAGTACTCCGTGTGCGACAGCGAGAGTCTGTGGGTGACCGACA
AGTCGTCGGCCATTGACATTCGGGGACACCAGGTCACGGTGCTGGGGGAGATCAAAACGG
GCAACTCCCCCGTCAAACAATATTTTTACGAGACGAGATGTAAGGAGGCCAGGCCTGTCA
AGAACGGTTGCAGGGGCATCGATGACAAACACTGGAACTCTCAATGCAAAACCTCCCAGA
CCTACGTCCGGGCACTGACGTCAGAAAACAACAAACTGGTTGGCTGGCGGTGGATACGGA
TAGACACGTCCTGTGTGTGTGCCTTGTCGCGGAAAATCGGAAGAACATGAATTGGCATCT
CTCCCCGTATATAAATTATTACTTTAAATTATACGATATGCATGTAGCATATAAATGTTT
ATATTGTTTTTATATATTATAAGTTGACCTTTATTTATTAAACTTCAGCCACCCTACCGT
ATATAAGCTTTTTTCTCAATAAAAGTCCGTGTGCTT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TATTTCTCGCGTATCTCCGTGGCATCCAAGGGAACAGCATGGATCAAAGGCGTCTGCCGG
AAGACTCGCTCAATTCCCTGATTATTAAGCTGATCCAGGCAGATATTTTAAAAAACAAGC
TCTCCAAGCAGATGGTGGACCTTCAGGAAAATTACCAGAGCACCCTGCCCAAGTCGGAAT
TCCAGCCCGTGACGGCCGTGGGCCCCGAATGGCTGCGGCACCAGAGACGCTACAACTCCC
CCCGGGTCCTGCTGAGTGACAGCACCCCCTTGGAGCCCCCTCCCCTGTACCTCGTGGAGG
ATTATGTGGGCAACCCCTCCGTGGCCAACAGAACGGCGCGGCGGAAGAGGTACGCGGAGC
ACAAGAGTCACCGGGGGGAGTACTCCGTGTGCGACAGCGAGAGTCTGTGGGTGACCGACA
AGTCGTCGGCCATTGACATTCGGGGACACCAGGTCACGGTGCTGGGGGAGATCAAAACGG
GCAACTCCCCCGTCAAACAATATTTTTACGAGACGAGATGTAAGGAGGCCAGGCCTGTCA
AGAACGGTTGCAGGGGCATCGATGACAAACACTGGAACTCTCAATGCAAAACCTCCCAGA
CCTACGTCCGGGCACTGACGTCAGAAAACAACAAACTGGTTGGCTGGCGGTGGATACGGA
TAGACACGTCCTGTGTGTGTGCCTTGTCGCGGAAAATCGGAAGAACATGAATTGGCATCT
CTCCCCGTATATAAATTATTACTTTAAATTATACGATATGCATGTAGCATATAAATGTTT
ATATTGTTTTTATATATTATAAGTTGACCTTTATTTATTAAACTTCAGCCACCCTACCGT
ATATAAGCTTTTTTCTCAATAAAAGTCCGTGTGCTT

Coded protein: 1 entry(ies)

More info

Coded protein: 1 entry(ies)

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               gi|61835047|ref|XP_610909.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|61835047|ref|XP_610909.1|

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               169-876, gnl|bosTau2|chr5 (62128424-62129131)
               

               
               169-876, gnl|Hg17|chr12 (5473874-5474580)
               

               
               169-876, gnl|Mm7|chr6 (126125065-126124355)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               169-876, gnl|bosTau2|chr5 (62128424-62129131)
               

               
               169-876, gnl|Hg17|chr12 (5473874-5474580)
               

               
               169-876, gnl|Mm7|chr6 (126125065-126124355)

Expressed library(ies): 3 entry(ies)

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Expressed library(ies): 3 entry(ies)

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               aor (0.390549)
               

               
               pla (0.133672)
               

               
               eep (0.122564)

Expressed library(ies): 3 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               aor (0.390549)
               

               
               pla (0.133672)
               

               
               eep (0.122564)

	169-876, gnl\|bosTau2\|chr5 (62128424-62129131)
	169-876, gnl\|Hg17\|chr12 (5473874-5474580)
	169-876, gnl\|Mm7\|chr6 (126125065-126124355)