Non-Coding RNA Search

Ss1.1-Pig4-TMW8040F09.3

Sequence:


               
               AGAAATGAGAGCTTTCCAGGGGCCTGGACACCATGGCCCTCAGGTCCATTATGCCCGCCT
CAAAACTCTACGTAGTTTAGAAGCCACTGACTCCGCCTTTGATAACCCGGATTACTGGCA
TAGCAGGCTTTTCCCCAAGGCTAATGCCCAGAGAACATAACCTCTGCTTCCTGAATACCT
CAGGGAGCATTTGATGGCAGCTAGTGCCTCTAGAGGGTACCCCTCTTCTCTTTAGCCCCT
CTCCCTCACAGGTCTCAGCGCCATTTCCCTAGTCCCAGACAATTCCATTCAAACTTTGGA
GGCCTTAAACGTGTTGACACAACGTTCTTGTGGTATATAGCCAGCTGTGCACTTTCTTCT
CTTTCCCAATCCCAGGAAAGGAGATAGTTTTCCTTATTTTGTGCTCTTTCCCAATCCTAT
TCCTCAACTTTCTCAGGGGAACTCCCTGGAGATATGAAGGATTCCTCCCCATATCCCTTT
CTCTCAGACTCTGACTTGTTGAGACTAGGCTTTAAAGTGTGACTTTGTTTCCCAGCAGAC
TTTTAAGGAAGAGGAAAGGGGGGAAAATGGCAGGAGAAAGTGAGATTTTTGGCTTATGAT
TCTTAACCCCCTAGAAAGAATGAGATGCTTAAAAATCTTGTGAAGAAAGAGGTTGGGAGT
ATATAGTAATGATTACTGTTCATTGAACGTTGACTGTGTGCCAAGTATCATCTAAACTTA
CCCATCTCACTTAATCCTTGACACCAATTCTGTGAGCTAGGCATTATCCCATTTTACAAA
TAAGGAAACTGAGCCTTAAGGAGATTAAGTAAATCAAGTAGCAGGTCCAGGATTCAAAAT
TTTCCAATGCACCATGCTCTTAGTGTAAGGTGTCAAAGAAAACTGATGAAAGTCAGAGCA
CTAGTAAGAGGTATTGTCTTCTTGTGTTTGCACTGAATCAAGTCTAACCCCAATATCCAC
AGCCTCCTCCTACACCTGGACTGCTCATCTCAGCAAGTGGGAGTAAGGGGGTGGACAGAA
GGAAAAATAACTGGACATCTCTGTGTAAACCGTAATCTTCGTGTGCTACATATGATATCT
GCCTAAGGGACAGACTCAGACGGTCCCCAGAGCCATTTTTTAGGAGCAGTTCTCATTCAG
TAGTGGGAAGCTTCCAGTGGAGATGAAAAAGAGGACCCGGCTTCAGACCTCAGTTCCTTT
GAATGGGAAACTGGGAGTATCTGTTTTTATCCCTCAAGTTTTTGTTTTGTTTTTATACAT
GTCTGAATAAAGATGCCAAGGTTT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               AGAAATGAGAGCTTTCCAGGGGCCTGGACACCATGGCCCTCAGGTCCATTATGCCCGCCT
CAAAACTCTACGTAGTTTAGAAGCCACTGACTCCGCCTTTGATAACCCGGATTACTGGCA
TAGCAGGCTTTTCCCCAAGGCTAATGCCCAGAGAACATAACCTCTGCTTCCTGAATACCT
CAGGGAGCATTTGATGGCAGCTAGTGCCTCTAGAGGGTACCCCTCTTCTCTTTAGCCCCT
CTCCCTCACAGGTCTCAGCGCCATTTCCCTAGTCCCAGACAATTCCATTCAAACTTTGGA
GGCCTTAAACGTGTTGACACAACGTTCTTGTGGTATATAGCCAGCTGTGCACTTTCTTCT
CTTTCCCAATCCCAGGAAAGGAGATAGTTTTCCTTATTTTGTGCTCTTTCCCAATCCTAT
TCCTCAACTTTCTCAGGGGAACTCCCTGGAGATATGAAGGATTCCTCCCCATATCCCTTT
CTCTCAGACTCTGACTTGTTGAGACTAGGCTTTAAAGTGTGACTTTGTTTCCCAGCAGAC
TTTTAAGGAAGAGGAAAGGGGGGAAAATGGCAGGAGAAAGTGAGATTTTTGGCTTATGAT
TCTTAACCCCCTAGAAAGAATGAGATGCTTAAAAATCTTGTGAAGAAAGAGGTTGGGAGT
ATATAGTAATGATTACTGTTCATTGAACGTTGACTGTGTGCCAAGTATCATCTAAACTTA
CCCATCTCACTTAATCCTTGACACCAATTCTGTGAGCTAGGCATTATCCCATTTTACAAA
TAAGGAAACTGAGCCTTAAGGAGATTAAGTAAATCAAGTAGCAGGTCCAGGATTCAAAAT
TTTCCAATGCACCATGCTCTTAGTGTAAGGTGTCAAAGAAAACTGATGAAAGTCAGAGCA
CTAGTAAGAGGTATTGTCTTCTTGTGTTTGCACTGAATCAAGTCTAACCCCAATATCCAC
AGCCTCCTCCTACACCTGGACTGCTCATCTCAGCAAGTGGGAGTAAGGGGGTGGACAGAA
GGAAAAATAACTGGACATCTCTGTGTAAACCGTAATCTTCGTGTGCTACATATGATATCT
GCCTAAGGGACAGACTCAGACGGTCCCCAGAGCCATTTTTTAGGAGCAGTTCTCATTCAG
TAGTGGGAAGCTTCCAGTGGAGATGAAAAAGAGGACCCGGCTTCAGACCTCAGTTCCTTT
GAATGGGAAACTGGGAGTATCTGTTTTTATCCCTCAAGTTTTTGTTTTGTTTTTATACAT
GTCTGAATAAAGATGCCAAGGTTT

Predicted RNA structure(s): 2 entry(ies)

More info

Predicted RNA structure(s): 2 entry(ies)

Help | Less info


               
               80-317, - strand, RNAz p=0.999874
               

               
               357-506, - strand, RNAz p=0.998081

Predicted RNA structure(s): 2 entry(ies)

Help | Less info

PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               80-317, - strand, RNAz p=0.999874
               

               
               357-506, - strand, RNAz p=0.998081

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               1-803, gnl|bosTau2|chr5 (33512450-33511642)
               

               
               1-803, gnl|Hg17|chr12 (54781947-54782745)
               

               
               1-803, gnl|Mm7|chr10 (128071295-128070526)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-803, gnl|bosTau2|chr5 (33512450-33511642)
               

               
               1-803, gnl|Hg17|chr12 (54781947-54782745)
               

               
               1-803, gnl|Mm7|chr10 (128071295-128070526)

Expressed library(ies): 20 entry(ies)

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Expressed library(ies): 20 entry(ies)

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               sto (0.899119)
               

               
               cmu (0.55918)
               

               
               sin (0.524843)
               

               
               pro (0.512033)
               

               
               lun (0.451467)
               

               
               tra (0.369276)
               

               
               mga (0.32041)
               

               
               tbr (0.308356)
               

               
               jej (0.296765)
               

               
               ese (0.253004)
               

               
               sag (0.182715)
               

               
               cki (0.165235)
               

               
               ski (0.146735)
               

               
               liv (0.146284)
               

               
               lin (0.145603)
               

               
               hyp (0.142837)
               

               
               cst (0.140036)
               

               
               lyg (0.133103)
               

               
               ute (0.132784)
               

               
               kid (0.129735)

Expressed library(ies): 20 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               sto (0.899119)
               

               
               cmu (0.55918)
               

               
               sin (0.524843)
               

               
               pro (0.512033)
               

               
               lun (0.451467)
               

               
               tra (0.369276)
               

               
               mga (0.32041)
               

               
               tbr (0.308356)
               

               
               jej (0.296765)
               

               
               ese (0.253004)
               

               
               sag (0.182715)
               

               
               cki (0.165235)
               

               
               ski (0.146735)
               

               
               liv (0.146284)
               

               
               lin (0.145603)
               

               
               hyp (0.142837)
               

               
               cst (0.140036)
               

               
               lyg (0.133103)
               

               
               ute (0.132784)
               

               
               kid (0.129735)

	80-317, - strand, RNAz p=0.999874
	357-506, - strand, RNAz p=0.998081

	1-803, gnl\|bosTau2\|chr5 (33512450-33511642)
	1-803, gnl\|Hg17\|chr12 (54781947-54782745)
	1-803, gnl\|Mm7\|chr10 (128071295-128070526)

	sto (0.899119)
	cmu (0.55918)
	sin (0.524843)
	pro (0.512033)
	lun (0.451467)
	tra (0.369276)
	mga (0.32041)
	tbr (0.308356)
	jej (0.296765)
	ese (0.253004)
	sag (0.182715)
	cki (0.165235)
	ski (0.146735)
	liv (0.146284)
	lin (0.145603)
	hyp (0.142837)
	cst (0.140036)
	lyg (0.133103)
	ute (0.132784)
	kid (0.129735)