Non-Coding RNA Search

Ss1.1-Pig4-TMW8040F20.3

Sequence:


               
               ACGCTGAGGCAGCGGAGGTGCGGAGAAAGCCAGGAGAGCGAGCCACGGCACTTCGAGTGC
TCTCCCCCACTTCTCTGCGGTGAATGGCGGCGGGATGGAGCACGAGGGGAGCGGCGGCAG
CGGGGGTTCAGCCGGACTCCTGCAGCAGATCCTCAGCTTGAAGCTCGTGCCGCGGGTGGG
CAACGGGACCCTGTGCCCCAACTCCACTTCTCTCTGCTCCTTCCCAGAGATGTGGTATGG
CGTGTTCCTGTGGGCGCTGGTGTCCTCCCTCTTCTTTCATGTCCCTGCTGGATTACTGGC
CCTCTTCACCCTCAGACATCACAAATATGGTAGGTTCATGTCTGTAAGCATCCTGTTGAT
GGGCATCGTGGGACCAATTACTGCCGGAGTCTTGACAAGTGCAGCAATTGCTGGAGTGTA
CCGGGCAGCAGGAAAGGAAATGATACCATTTGAGGCCCTGACCTTGGGCACAGGACAGAC
GTTCTGTGTCGTCGTGGTCTCGTTTTTACGGATTTTAGCTACTCTGTAGCTACATGCTTG
TGCTGTGATGGCCAACCTGTTTTGTAGAATCCTCGAAAAGAATACATTTTGGAATGTAGT
GTTTTCCTTAGTTCTTCAACGGAAGCAACTTGGAAGAAAAAGTCTCTCAAGAGCTCCACT
TCAGTCCTTTCTTCAGTTTGAAGCTCCAGGAATTAAAGATCTTTCGGGACTCACTGTTCT
CAACCAAAACAAATCGTGCTTCTTTTCTTTTTAAACATACTCAGTTACTTTCACAGGTGC
ACCTTTACCCAAGCCAGGTCAGAAGTGCTTCTGAGTGGGCTGCCTTCGCACTGAAACTTG
TAATATTCTCTGAGAAAATGCAAAGTCACATATTGCAGAGAAGCTCTGGAACATGTTAGT
TTATTTCCGAACAGAGTATATTGTACTCCAATCTGATCTGATCTGATCGTGATTGAAATT
TGGCAGACTCTTCTCTTGCCACACCTTCATGACATAAGTGCCAAGTAGGTCCTGGTTGAA
TATAGCATTGAGAATGAATGTGGTGAAATAAAAAACATGGAAAAAAAT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               ACGCTGAGGCAGCGGAGGTGCGGAGAAAGCCAGGAGAGCGAGCCACGGCACTTCGAGTGC
TCTCCCCCACTTCTCTGCGGTGAATGGCGGCGGGATGGAGCACGAGGGGAGCGGCGGCAG
CGGGGGTTCAGCCGGACTCCTGCAGCAGATCCTCAGCTTGAAGCTCGTGCCGCGGGTGGG
CAACGGGACCCTGTGCCCCAACTCCACTTCTCTCTGCTCCTTCCCAGAGATGTGGTATGG
CGTGTTCCTGTGGGCGCTGGTGTCCTCCCTCTTCTTTCATGTCCCTGCTGGATTACTGGC
CCTCTTCACCCTCAGACATCACAAATATGGTAGGTTCATGTCTGTAAGCATCCTGTTGAT
GGGCATCGTGGGACCAATTACTGCCGGAGTCTTGACAAGTGCAGCAATTGCTGGAGTGTA
CCGGGCAGCAGGAAAGGAAATGATACCATTTGAGGCCCTGACCTTGGGCACAGGACAGAC
GTTCTGTGTCGTCGTGGTCTCGTTTTTACGGATTTTAGCTACTCTGTAGCTACATGCTTG
TGCTGTGATGGCCAACCTGTTTTGTAGAATCCTCGAAAAGAATACATTTTGGAATGTAGT
GTTTTCCTTAGTTCTTCAACGGAAGCAACTTGGAAGAAAAAGTCTCTCAAGAGCTCCACT
TCAGTCCTTTCTTCAGTTTGAAGCTCCAGGAATTAAAGATCTTTCGGGACTCACTGTTCT
CAACCAAAACAAATCGTGCTTCTTTTCTTTTTAAACATACTCAGTTACTTTCACAGGTGC
ACCTTTACCCAAGCCAGGTCAGAAGTGCTTCTGAGTGGGCTGCCTTCGCACTGAAACTTG
TAATATTCTCTGAGAAAATGCAAAGTCACATATTGCAGAGAAGCTCTGGAACATGTTAGT
TTATTTCCGAACAGAGTATATTGTACTCCAATCTGATCTGATCTGATCGTGATTGAAATT
TGGCAGACTCTTCTCTTGCCACACCTTCATGACATAAGTGCCAAGTAGGTCCTGGTTGAA
TATAGCATTGAGAATGAATGTGGTGAAATAAAAAACATGGAAAAAAAT

Coded protein: 1 entry(ies)

More info

Coded protein: 1 entry(ies)

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               Q8WVE7_HUMAN

Coded protein: 1 entry(ies)

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Protein identifier


               
               Q8WVE7_HUMAN

Aligned organism(s): 19 entry(ies)

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Aligned organism(s): 19 entry(ies)

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               46-227, gnl|bosTau2|chr18 (1746474-1746655)
               

               
               46-227, gnl|canFam2|chr5 (78293229-78292989)
               

               
               46-227, gnl|dasNov1|scaffold_6681 (26589-26372)
               

               
               46-227, gnl|echTel1|scaffold_320224 (8328-8097)
               

               
               46-227, gnl|hg17|chr11 (128596722-128596841)
               

               
               46-227, gnl|hg17|chr16 (74055863-74056086)
               

               
               46-227, gnl|Hg17|chr16 (74056023-74055867)
               

               
               46-227, gnl|loxAfr1|scaffold_12805 (44616-44368)
               

               
               46-227, gnl|mm7|chr8 (110476544-110476738)
               

               
               46-227, gnl|Mm7|chr8 (110476698-110476548)
               

               
               46-227, gnl|mm7|chr9 (31996140-31996053)
               

               
               46-227, gnl|monDom2|scaffold_23 (247232-247457)
               

               
               46-227, gnl|oryCun1|scaffold_176656 (66353-66577)
               

               
               46-227, gnl|panTro1|chr18 (68456256-68456479)
               

               
               46-227, gnl|panTro1|chr9_random (8199709-8199828)
               

               
               46-227, gnl|rheMac2|chr14 (127350204-127350323)
               

               
               46-227, gnl|rheMac2|chr20 (73574189-73574412)
               


               
               395-1064, gnl|bosTau2|chr18 (1757069-1757727)
               

               
               395-1064, gnl|Hg17|chr16 (74039091-74038419)

Aligned organism(s): 19 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               46-227, gnl|bosTau2|chr18 (1746474-1746655)
               

               
               46-227, gnl|canFam2|chr5 (78293229-78292989)
               

               
               46-227, gnl|dasNov1|scaffold_6681 (26589-26372)
               

               
               46-227, gnl|echTel1|scaffold_320224 (8328-8097)
               

               
               46-227, gnl|hg17|chr11 (128596722-128596841)
               

               
               46-227, gnl|hg17|chr16 (74055863-74056086)
               

               
               46-227, gnl|Hg17|chr16 (74056023-74055867)
               

               
               46-227, gnl|loxAfr1|scaffold_12805 (44616-44368)
               

               
               46-227, gnl|mm7|chr8 (110476544-110476738)
               

               
               46-227, gnl|Mm7|chr8 (110476698-110476548)
               

               
               46-227, gnl|mm7|chr9 (31996140-31996053)
               

               
               46-227, gnl|monDom2|scaffold_23 (247232-247457)
               

               
               46-227, gnl|oryCun1|scaffold_176656 (66353-66577)
               

               
               46-227, gnl|panTro1|chr18 (68456256-68456479)
               

               
               46-227, gnl|panTro1|chr9_random (8199709-8199828)
               

               
               46-227, gnl|rheMac2|chr14 (127350204-127350323)
               

               
               46-227, gnl|rheMac2|chr20 (73574189-73574412)
               


               
               395-1064, gnl|bosTau2|chr18 (1757069-1757727)
               

               
               395-1064, gnl|Hg17|chr16 (74039091-74038419)

Expressed library(ies): 2 entry(ies)

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Expressed library(ies): 2 entry(ies)

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               mga (0.160205)
               

               
               sug (0.127291)

Expressed library(ies): 2 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               mga (0.160205)
               

               
               sug (0.127291)

	46-227, gnl\|bosTau2\|chr18 (1746474-1746655)
	46-227, gnl\|canFam2\|chr5 (78293229-78292989)
	46-227, gnl\|dasNov1\|scaffold_6681 (26589-26372)
	46-227, gnl\|echTel1\|scaffold_320224 (8328-8097)
	46-227, gnl\|hg17\|chr11 (128596722-128596841)
	46-227, gnl\|hg17\|chr16 (74055863-74056086)
	46-227, gnl\|Hg17\|chr16 (74056023-74055867)
	46-227, gnl\|loxAfr1\|scaffold_12805 (44616-44368)
	46-227, gnl\|mm7\|chr8 (110476544-110476738)
	46-227, gnl\|Mm7\|chr8 (110476698-110476548)
	46-227, gnl\|mm7\|chr9 (31996140-31996053)
	46-227, gnl\|monDom2\|scaffold_23 (247232-247457)
	46-227, gnl\|oryCun1\|scaffold_176656 (66353-66577)
	46-227, gnl\|panTro1\|chr18 (68456256-68456479)
	46-227, gnl\|panTro1\|chr9_random (8199709-8199828)
	46-227, gnl\|rheMac2\|chr14 (127350204-127350323)
	46-227, gnl\|rheMac2\|chr20 (73574189-73574412)

	395-1064, gnl\|bosTau2\|chr18 (1757069-1757727)
	395-1064, gnl\|Hg17\|chr16 (74039091-74038419)