Ss1.1-Pig4-TMW8040F22.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| TTTGATAATCAGCATGGAGGCGGGCGAGGTCCTCCGACGTTGCGGGGGCCGAATGGAGAA GCCGCTCGCCGGTGCCCCGGGCTGCTGAGCTCCCGCCGCTCCCCGCGGCTCGGCCGCCCA GCCATGCTAGCCTCGCGGGTGGCGCGCGCCTCGTGGGGGACCCTGCGCGTCGCCGCATGG GCGCCGGGAGTACGGCCAGGCAAGGGGCGCGCCCGCGGGGCAGTGCTGCCTGCCGCGTCC TGCTGCCTGGGCTGCCTGGCAGAGCGCTGGTGGCTGCGCCCGACCGCGCTCGGCCTACGC TTGCCCGGGACCGGCCCGCGGGCCCATTGCTCGGGATCGCGGAAGGCGGCCCCTGGGTCT GCGGCTGGAGAGGACGTCGCCGCCGAGGCCCGGAGCGGCCGGTGGGGTCCGGCGAGCGCC CCCAGCCTGTATGAAAACCCATGGACAATCCCAAATATGTTGTCAATGACGAGAATTGGC TTGGCTCCAGTTTTGGGCTATTTGATTATTGAAGAAGATTTTAATATTGCACTAGGAGTT TTTGCTTTAGCTGGGCTAACTGATTTGTTGGATGGATTTATTGCTCGAAACTGGGCCAAT CAAAAATCAGCTTTGGGAAGTGCCCTTGATCCACTTGCTGATAAAATACTTATCAGTGTC TTATATGTTAGCTTGACCTATGCAGATCTTATTCCAGTTCCACTTACTTATATGATAATT TCCAGAGATATAATGTTGATTGCTGCTGTTTTTTATGTCAGATATCGAACTCTTCCAACA CCGCGAACACTTTCTAAGTATTTCAATCCTTGCTATGCCACTGCTAGGTTAAAACCAACC TTCATCAGCAAGGTAAACACAGCAGTCCAGTTAATCTTGGTGGCGGCTTCTTTGGCAGCT CCAGTTTTCAATTATGCTGACAGCATTTATCTTCAAATCCTGTGGTGTTTTACAGCTTTC ACCACAGCTGCATCAGCTTACAGTTATTATCATTATGGTCGGAAAACTGTTCAGGTGATA AAAGGCAGATGAAAGTCATCCATCATTCGCAAAGAAGCCATATACATCATCAGCTGCGGC AGGGCCAGTGAAAATCTAGAGAGTTCCCTTATTTTGGTGTTCAGCTTGAAAAAGGACTTG TCAGAACAAACCATGTCATCAAAATTTAATGTGCATTGAAAATAAGCTTGATCATGGGCA TATGCAGAATTTCCAATGTATTTTTAAATACGAATAAAATTATAATTTAGAATTTTTTAT CTTAGGTTTCTTGATTAATTTATAAGGCAGCAATTATTCCAATTGGTGTCATTTTTTAAT ACATTAAAAAAAGAAAAGCCTAGAGCATGGAAACTGAAGAGTTGCTACTTCTCTTTAATA GAATTTAGATCATTCACAAGGAATTACCTGGATTTAAATATACATCCAATACACTTGGCT ACACAGTTTTATGTTGGATTTTTAGTTCTGTGTACACATTAACAGTACATGTGGTTAATA TTTGAATGTTTAAGGTAATGACAATAAAAGCAGCTTTAGTTGTGGATGAAGTAAACTAAA GAGATTTAAAATGCAGTAAGTTTTGGAAATAATAAAATAGAAGGTGTTGAAGTTTATGTT CAGAAGTCTTCCAACCTCTCAGGTGCCTAATAGTTTATGCATCAGGAAAATAGTAGCAAA GTAGTTGGAAAATGAAAACATATCTGTTACCCATAAAAAAGGCAGTAAGTTACATCATGC CTTCCCACTGTATCTCTTAACGTAACGGTGTTTGTATGATATTGGAACCTGTACTCAAAT GTTATGTAAATAATATGAAACTGTATATTTTTCAAAGGTTTGTTTTTTTTTAAAACTTTG AGGAATCTTTTGTTAAGATGTTAAAGGAATAAAAGAGCTTGAAAAAAAAAAAAAAAAAAA |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| TTTGATAATCAGCATGGAGGCGGGCGAGGTCCTCCGACGTTGCGGGGGCCGAATGGAGAA GCCGCTCGCCGGTGCCCCGGGCTGCTGAGCTCCCGCCGCTCCCCGCGGCTCGGCCGCCCA GCCATGCTAGCCTCGCGGGTGGCGCGCGCCTCGTGGGGGACCCTGCGCGTCGCCGCATGG GCGCCGGGAGTACGGCCAGGCAAGGGGCGCGCCCGCGGGGCAGTGCTGCCTGCCGCGTCC TGCTGCCTGGGCTGCCTGGCAGAGCGCTGGTGGCTGCGCCCGACCGCGCTCGGCCTACGC TTGCCCGGGACCGGCCCGCGGGCCCATTGCTCGGGATCGCGGAAGGCGGCCCCTGGGTCT GCGGCTGGAGAGGACGTCGCCGCCGAGGCCCGGAGCGGCCGGTGGGGTCCGGCGAGCGCC CCCAGCCTGTATGAAAACCCATGGACAATCCCAAATATGTTGTCAATGACGAGAATTGGC TTGGCTCCAGTTTTGGGCTATTTGATTATTGAAGAAGATTTTAATATTGCACTAGGAGTT TTTGCTTTAGCTGGGCTAACTGATTTGTTGGATGGATTTATTGCTCGAAACTGGGCCAAT CAAAAATCAGCTTTGGGAAGTGCCCTTGATCCACTTGCTGATAAAATACTTATCAGTGTC TTATATGTTAGCTTGACCTATGCAGATCTTATTCCAGTTCCACTTACTTATATGATAATT TCCAGAGATATAATGTTGATTGCTGCTGTTTTTTATGTCAGATATCGAACTCTTCCAACA CCGCGAACACTTTCTAAGTATTTCAATCCTTGCTATGCCACTGCTAGGTTAAAACCAACC TTCATCAGCAAGGTAAACACAGCAGTCCAGTTAATCTTGGTGGCGGCTTCTTTGGCAGCT CCAGTTTTCAATTATGCTGACAGCATTTATCTTCAAATCCTGTGGTGTTTTACAGCTTTC ACCACAGCTGCATCAGCTTACAGTTATTATCATTATGGTCGGAAAACTGTTCAGGTGATA AAAGGCAGATGAAAGTCATCCATCATTCGCAAAGAAGCCATATACATCATCAGCTGCGGC AGGGCCAGTGAAAATCTAGAGAGTTCCCTTATTTTGGTGTTCAGCTTGAAAAAGGACTTG TCAGAACAAACCATGTCATCAAAATTTAATGTGCATTGAAAATAAGCTTGATCATGGGCA TATGCAGAATTTCCAATGTATTTTTAAATACGAATAAAATTATAATTTAGAATTTTTTAT CTTAGGTTTCTTGATTAATTTATAAGGCAGCAATTATTCCAATTGGTGTCATTTTTTAAT ACATTAAAAAAAGAAAAGCCTAGAGCATGGAAACTGAAGAGTTGCTACTTCTCTTTAATA GAATTTAGATCATTCACAAGGAATTACCTGGATTTAAATATACATCCAATACACTTGGCT ACACAGTTTTATGTTGGATTTTTAGTTCTGTGTACACATTAACAGTACATGTGGTTAATA TTTGAATGTTTAAGGTAATGACAATAAAAGCAGCTTTAGTTGTGGATGAAGTAAACTAAA GAGATTTAAAATGCAGTAAGTTTTGGAAATAATAAAATAGAAGGTGTTGAAGTTTATGTT CAGAAGTCTTCCAACCTCTCAGGTGCCTAATAGTTTATGCATCAGGAAAATAGTAGCAAA GTAGTTGGAAAATGAAAACATATCTGTTACCCATAAAAAAGGCAGTAAGTTACATCATGC CTTCCCACTGTATCTCTTAACGTAACGGTGTTTGTATGATATTGGAACCTGTACTCAAAT GTTATGTAAATAATATGAAACTGTATATTTTTCAAAGGTTTGTTTTTTTTTAAAACTTTG AGGAATCTTTTGTTAAGATGTTAAAGGAATAAAAGAGCTTGAAAAAAAAAAAAAAAAAAA |
| Coded protein: 1 entry(ies) | More info |
| Aligned organism(s): 24 entry(ies) | More info |
| Aligned organism(s): 24 entry(ies) | Help | Less info |
| 1-429, gnl|bosTau2|chr13 (32894479-32894046) | |
| 1-429, gnl|Hg17|chr20 (5934759-5935198) | |
| 1-429, gnl|Mm7|chr2 (132587545-132587978) | |
| 567-697, gnl|bosTau2|chr13 (32886808-32886678) | |
| 567-697, gnl|canFam2|chr24 (18827234-18827088) | |
| 567-697, gnl|danRer3|chr3 (25227098-25226953) | |
| 567-697, gnl|dasNov1|scaffold_19889 (509-363) | |
| 567-697, gnl|echTel1|scaffold_325469 (132161-132291) | |
| 567-697, gnl|fr1|chrUn (179307017-179307152) | |
| 567-697, gnl|galGal2|chr3 (13279826-13279972) | |
| 567-697, gnl|hg17|chr20 (5943999-5944145) | |
| 567-697, gnl|Hg17|chr20 (5944006-5944136) | |
| 567-697, gnl|loxAfr1|scaffold_4299 (20087-19941) | |
| 567-697, gnl|mm7|chr2 (132595738-132595884) | |
| 567-697, gnl|Mm7|chr2 (132595745-132595875) | |
| 567-697, gnl|monDom2|scaffold_1 (36285411-36285557) | |
| 567-697, gnl|oryCun1|scaffold_212871 (13484-13338) | |
| 567-697, gnl|panTro1|chr21 (5823626-5823772) | |
| 567-697, gnl|rn3|chr3 (120560984-120561130) | |
| 567-697, gnl|tetNig1|chr17 (9262642-9262504) | |
| 567-697, gnl|xenTro1|scaffold_239 (10872-11016) | |
| 944-1909, gnl|bosTau2|chr13 (32872889-32871896) | |
| 944-1909, gnl|Hg17|chr20 (5965719-5966690) | |
| 944-1909, gnl|Mm7|chr2 (132606689-132607630) |
| Aligned organism(s): 24 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 1-429, gnl|bosTau2|chr13 (32894479-32894046) | |
| 1-429, gnl|Hg17|chr20 (5934759-5935198) | |
| 1-429, gnl|Mm7|chr2 (132587545-132587978) | |
| 567-697, gnl|bosTau2|chr13 (32886808-32886678) | |
| 567-697, gnl|canFam2|chr24 (18827234-18827088) | |
| 567-697, gnl|danRer3|chr3 (25227098-25226953) | |
| 567-697, gnl|dasNov1|scaffold_19889 (509-363) | |
| 567-697, gnl|echTel1|scaffold_325469 (132161-132291) | |
| 567-697, gnl|fr1|chrUn (179307017-179307152) | |
| 567-697, gnl|galGal2|chr3 (13279826-13279972) | |
| 567-697, gnl|hg17|chr20 (5943999-5944145) | |
| 567-697, gnl|Hg17|chr20 (5944006-5944136) | |
| 567-697, gnl|loxAfr1|scaffold_4299 (20087-19941) | |
| 567-697, gnl|mm7|chr2 (132595738-132595884) | |
| 567-697, gnl|Mm7|chr2 (132595745-132595875) | |
| 567-697, gnl|monDom2|scaffold_1 (36285411-36285557) | |
| 567-697, gnl|oryCun1|scaffold_212871 (13484-13338) | |
| 567-697, gnl|panTro1|chr21 (5823626-5823772) | |
| 567-697, gnl|rn3|chr3 (120560984-120561130) | |
| 567-697, gnl|tetNig1|chr17 (9262642-9262504) | |
| 567-697, gnl|xenTro1|scaffold_239 (10872-11016) | |
| 944-1909, gnl|bosTau2|chr13 (32872889-32871896) | |
| 944-1909, gnl|Hg17|chr20 (5965719-5966690) | |
| 944-1909, gnl|Mm7|chr2 (132606689-132607630) |
| Expressed library(ies): 29 entry(ies) | More info |
| Expressed library(ies): 29 entry(ies) | Help | Less info |
| ret (0.7724) | |
| bfe (0.749288) | |
| vin (0.665115) | |
| lin (0.582411) | |
| mcp (0.511945) | |
| mgp (0.461361) | |
| col (0.390016) | |
| rec (0.346141) | |
| mga (0.32041) | |
| tbr (0.308356) | |
| lun (0.300978) | |
| kid (0.259471) | |
| ova (0.258264) | |
| tra (0.246184) | |
| aor (0.195274) | |
| ldo (0.194005) | |
| sag (0.182715) | |
| mgm (0.180343) | |
| nje (0.16592) | |
| fco (0.157208) | |
| liv (0.146284) | |
| spl (0.143184) | |
| ste (0.135208) | |
| pla (0.133672) | |
| lyg (0.133103) | |
| sug (0.127291) | |
| bla (0.124347) | |
| eep (0.122564) | |
| jca (0.11396) |
| Expressed library(ies): 29 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| ret (0.7724) | |
| bfe (0.749288) | |
| vin (0.665115) | |
| lin (0.582411) | |
| mcp (0.511945) | |
| mgp (0.461361) | |
| col (0.390016) | |
| rec (0.346141) | |
| mga (0.32041) | |
| tbr (0.308356) | |
| lun (0.300978) | |
| kid (0.259471) | |
| ova (0.258264) | |
| tra (0.246184) | |
| aor (0.195274) | |
| ldo (0.194005) | |
| sag (0.182715) | |
| mgm (0.180343) | |
| nje (0.16592) | |
| fco (0.157208) | |
| liv (0.146284) | |
| spl (0.143184) | |
| ste (0.135208) | |
| pla (0.133672) | |
| lyg (0.133103) | |
| sug (0.127291) | |
| bla (0.124347) | |
| eep (0.122564) | |
| jca (0.11396) |