Non-Coding RNA Search

Ss1.1-Pig4-TMW8040F23.5

Sequence:


               
               AACTCACTGTACAGTCCACATAATTTAAATGCTAATGGAGGCTGGCAGGACGCAACAACT
CCATCTTCTGTGACTTCTCCTACAGAAGGCCCAGGAAGTGTGCACTCTGATACCTCTAAC
TAATCTCCGGCAACACTTTTCCCTGAGCTGACATGCCTTGATAAGTGCATTCAGAGCAAT
AGGAGGAAAAGGAAAGCGTTTTTGTAGCCCACCATCTACAGCTTTACTGTAAAACCTTGT
CTTATTAGAGAACTTGGTAAATCTGTTTTTTAAGGAATCATAATCATTTGTATTTATACT
TAAAAACACACAATGTTAAAAAAAGCACTTTATCCAATTAGGCCAAGATTTAACATTGTT
GACAGTCCTGTAGCTATTTTATCATAATTTATTATCAATATTTTACATTCATGGTTTCTC
ACTTGCCAATTACTTGGCCTTAAGGGTAAAAAGTACAATATATGCTAAACCTCAATCGTT
AAAGCAGATACAAAGACTCACCTCACCTAAATTGAACTTCTTGCATATTTCCATCGCAGA
CTTTGATTGTCCTTCTTTCGTATCACTAATGGAGTTGGAATAAAGGAGCTGTTTGGCTAA
CTGTTAAGGATGGTTGTGTTTAAGAATCTTCCTCGTCACACTTGTGTTGCGATCTCTTAG
GTTATAATTAGATCAGAGACCGGTAGCATCTTTTCTCTCTCTGAAAGCACCAGTGCCCTG
AGTCTGCTCGGTAATTAAATTATGGATCCAGACTGTTTTGAGAGATGAAGATACTTGCTG
CTGATAGAGGTGAACACGAGATCCGTGTCTGGGGTTTTACGGTGTGCGCTGGGTGCTGCA
CAGACTTGTCAAGGTTTGCTACGTCCTCTGGGCATCGACAAAGGCCCTGCTCTCTGGAGT
GTTGTATATAGTGTAGCAAAAGAGTATTTATACATCTCACCAATCAAAACACAGCTTTAT
TACCTCATGCGAACTCATACGAACCAATAGAATTTCAACATGTTCTGTAGCTTAGAGTGC
TCACTTACTACCTCTGAACAATACTCACGCTGTAGTTTGTCTCTTTCTTATCTGATATTT
TGCATCTTGTAATTAACTCTTTGTTTCCCTTCATAAGATGTAATGTACATTGTAATCTTT
TAAAAGAAAAATCAGGGTTGCATTTGCAACTTTTAAAAAACCGAGAGTGGAAACATTGGG
TCTTAAATTAACACAGGATCAGTAAAACTGTTGTAAATACCTGAGAAACATTTTGAATGT
TCTTCATCTTGTTACTAATCCATGCAAAGAAAAAAAAAAAAAGCGGCGACTAATTGTGAT
GCATTCAGATTTCAGTATTCGGTACTGTATATTTCACCCTGTGTAATGGGGCCCCCTTCT
CCTTTCTCTCTTTTTGTATTGTATGCGATTCTGAAACTGATTGAGTCATGAAAAAAATTT
GTGGCGGTGATTCTAATGTATTAAATGCGTTTCGTGTTCCTTTCTAACTGGATTACACCC
TGGATTGAAAAAGTCTTCCTCGTGGTAGTTATATGTAGTTTCAAACATGAATAAACTTTT
TGCTTTCATGGA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               AACTCACTGTACAGTCCACATAATTTAAATGCTAATGGAGGCTGGCAGGACGCAACAACT
CCATCTTCTGTGACTTCTCCTACAGAAGGCCCAGGAAGTGTGCACTCTGATACCTCTAAC
TAATCTCCGGCAACACTTTTCCCTGAGCTGACATGCCTTGATAAGTGCATTCAGAGCAAT
AGGAGGAAAAGGAAAGCGTTTTTGTAGCCCACCATCTACAGCTTTACTGTAAAACCTTGT
CTTATTAGAGAACTTGGTAAATCTGTTTTTTAAGGAATCATAATCATTTGTATTTATACT
TAAAAACACACAATGTTAAAAAAAGCACTTTATCCAATTAGGCCAAGATTTAACATTGTT
GACAGTCCTGTAGCTATTTTATCATAATTTATTATCAATATTTTACATTCATGGTTTCTC
ACTTGCCAATTACTTGGCCTTAAGGGTAAAAAGTACAATATATGCTAAACCTCAATCGTT
AAAGCAGATACAAAGACTCACCTCACCTAAATTGAACTTCTTGCATATTTCCATCGCAGA
CTTTGATTGTCCTTCTTTCGTATCACTAATGGAGTTGGAATAAAGGAGCTGTTTGGCTAA
CTGTTAAGGATGGTTGTGTTTAAGAATCTTCCTCGTCACACTTGTGTTGCGATCTCTTAG
GTTATAATTAGATCAGAGACCGGTAGCATCTTTTCTCTCTCTGAAAGCACCAGTGCCCTG
AGTCTGCTCGGTAATTAAATTATGGATCCAGACTGTTTTGAGAGATGAAGATACTTGCTG
CTGATAGAGGTGAACACGAGATCCGTGTCTGGGGTTTTACGGTGTGCGCTGGGTGCTGCA
CAGACTTGTCAAGGTTTGCTACGTCCTCTGGGCATCGACAAAGGCCCTGCTCTCTGGAGT
GTTGTATATAGTGTAGCAAAAGAGTATTTATACATCTCACCAATCAAAACACAGCTTTAT
TACCTCATGCGAACTCATACGAACCAATAGAATTTCAACATGTTCTGTAGCTTAGAGTGC
TCACTTACTACCTCTGAACAATACTCACGCTGTAGTTTGTCTCTTTCTTATCTGATATTT
TGCATCTTGTAATTAACTCTTTGTTTCCCTTCATAAGATGTAATGTACATTGTAATCTTT
TAAAAGAAAAATCAGGGTTGCATTTGCAACTTTTAAAAAACCGAGAGTGGAAACATTGGG
TCTTAAATTAACACAGGATCAGTAAAACTGTTGTAAATACCTGAGAAACATTTTGAATGT
TCTTCATCTTGTTACTAATCCATGCAAAGAAAAAAAAAAAAAGCGGCGACTAATTGTGAT
GCATTCAGATTTCAGTATTCGGTACTGTATATTTCACCCTGTGTAATGGGGCCCCCTTCT
CCTTTCTCTCTTTTTGTATTGTATGCGATTCTGAAACTGATTGAGTCATGAAAAAAATTT
GTGGCGGTGATTCTAATGTATTAAATGCGTTTCGTGTTCCTTTCTAACTGGATTACACCC
TGGATTGAAAAAGTCTTCCTCGTGGTAGTTATATGTAGTTTCAAACATGAATAAACTTTT
TGCTTTCATGGA

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               1056-1254, + strand, RNAz p=0.992646

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               1056-1254, + strand, RNAz p=0.992646

Homologous human UTR: 1 entry(ies)

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Homologous human UTR: 1 entry(ies)

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               3' of CR620669, +

Homologous human UTR: 1 entry(ies)

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Human gene identifier and UTR site,
human gene reading direction


               
               3' of CR620669, +

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               31-1570, gnl|bosTau2|chr24 (24260621-24262162)
               

               
               31-1570, gnl|Hg17|chr9 (125807664-125809204)
               

               
               31-1570, gnl|Mm7|chr2 (34180284-34178778)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               31-1570, gnl|bosTau2|chr24 (24260621-24262162)
               

               
               31-1570, gnl|Hg17|chr9 (125807664-125809204)
               

               
               31-1570, gnl|Mm7|chr2 (34180284-34178778)

Expressed library(ies): 19 entry(ies)

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Expressed library(ies): 19 entry(ies)

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               rec (0.346141)
               

               
               pgl (0.236967)
               

               
               sag (0.182715)
               

               
               sto (0.179824)
               

               
               fhi (0.169578)
               

               
               fat (0.147427)
               

               
               liv (0.146284)
               

               
               spl (0.143184)
               

               
               cst (0.140036)
               

               
               nmm (0.132802)
               

               
               kid (0.129735)
               

               
               ova (0.129132)
               

               
               sug (0.127291)
               

               
               thg (0.126791)
               

               
               ese (0.126502)
               

               
               bla (0.124347)
               

               
               jca (0.11396)
               

               
               spc (0.113366)
               

               
               eje (0.0988338)

Expressed library(ies): 19 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               rec (0.346141)
               

               
               pgl (0.236967)
               

               
               sag (0.182715)
               

               
               sto (0.179824)
               

               
               fhi (0.169578)
               

               
               fat (0.147427)
               

               
               liv (0.146284)
               

               
               spl (0.143184)
               

               
               cst (0.140036)
               

               
               nmm (0.132802)
               

               
               kid (0.129735)
               

               
               ova (0.129132)
               

               
               sug (0.127291)
               

               
               thg (0.126791)
               

               
               ese (0.126502)
               

               
               bla (0.124347)
               

               
               jca (0.11396)
               

               
               spc (0.113366)
               

               
               eje (0.0988338)

	31-1570, gnl\|bosTau2\|chr24 (24260621-24262162)
	31-1570, gnl\|Hg17\|chr9 (125807664-125809204)
	31-1570, gnl\|Mm7\|chr2 (34180284-34178778)

	rec (0.346141)
	pgl (0.236967)
	sag (0.182715)
	sto (0.179824)
	fhi (0.169578)
	fat (0.147427)
	liv (0.146284)
	spl (0.143184)
	cst (0.140036)
	nmm (0.132802)
	kid (0.129735)
	ova (0.129132)
	sug (0.127291)
	thg (0.126791)
	ese (0.126502)
	bla (0.124347)
	jca (0.11396)
	spc (0.113366)
	eje (0.0988338)