Ss1.1-Pig4-TMW8040G11.3
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| TAAAGATCATTCCTTCCTGACAGACGAGGAGCTCACCGCGCTGCCCGTCGTCAAAGTGCT TCCCTCCGGTAAATACACTGGTACTGAGTTGAAGTCAGTGATTCGAATGTTACGGGGTTT ACTAGATCAAGGAATTCCATCTAAGGAGCTGGAGAATCTTCAAGAATTGAAACCTCTGGA TCAGTGTCTGATTGGACAGACTAAGGAAAACAGAAGGAAGAACCGATACAAAAACATACT TCCCTATGACGCAACAAGGGTGCCCCTGGGAGATGAAGGTGGATACATCAACGCCAGCTT CATTAAGATACCAGTGGGGAGAGAAGAGTTCGTCTACATTGCCTGCCAAGGACCTCTCCC GACAACCGTTGGAGATTTCTGGCAGATGATCTGGGAGCAGAAATCGACAGTGATAGCCAT GATGACCCAAGAAGTAGAAGGGGAAAAAATCAAATGCCAGCGCTACTGGCCCAACATTCT AGGCAAAACAACCATGGTCGGCGACCGGCTTCGACTGGCTCTTGTGAGAATGCAGCAGCT GAAGGGCTTTGTAGTAAGAGCAATGACCCTAGAAGATATTCAGACGGGAGAGGTGCGACA TATTTCTCATCTGAATTTCACGGCCTGGCCAGACCACGACACACCTTCTCAGCCGGACGA CTTGCTCACTTTCATCTCCTACATGAGACACGTTCACAGATCAGGCCCGATCATCACGCA CTGCAGTGCTGGCATTGGCCGCTCGGGGACCCTGATATGCATCGATGTGGTTCTAGGATT AATCAGTCAGGATCTCGAATTTGGCATCTCTGATGTAGTGCGCTGCATGAGACTGCAAAG ACACGGAATGGTTCAGACGGAGGATCAATATATTTTCTGCTATCAAGTCATCCTTTATGT CCTGACACGTCTTCAAGCTGAGGAAGAGCAAAAAGAGCAGCCCCAGCCTGTGCAGTGACG TGAAAAGAACAGGCTTCCAGATGTCTGTCCGTTTCAGTCCTCACTCCCAGCAGACGCGCC TGTTCTCTGTTTAAAATAAAGATCCCAGGGCAGCAAGTTCACACAATATCCTTAGGCTTA TTCTCCTCTACCTTAGAGGGGCCATTCGCAATAGCAATAAACAATGGTGAAATGCTGTAT TTTTACAGCTACTTTAACCTGTGAGAACAAAGATTTTTTTAACACTAACTGAATAACGCA GATCTTAGGGATGATTGAGGCAGCATTTGATTATAGTCGACGCTGTTACAGGGACACATC GAGTCTATTTTTAATGCACCAATCTTGTTTATAGCAAAATTATTTTCCAGTATTTTAATA AACTAGAGTTATTTTATAGGGGATACTTGAAACCAGTATTTAAGCTTTAAACGACGGTAA TACTGGCATAGAAAAAAAGTAGCAAACGTTTACTGTATCAATTTCTAATGTTTACTATCT AGAACTTCCTGTAATATATTTATATACTTTTTCATGAAAATGGAGATATCAAATGTTTGT AACTGCATTGTCTGTTATACATCATCTCACTTTGTAAATAAAAATACACCTTAAAACATA AAAAAAAAAAAA |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| TAAAGATCATTCCTTCCTGACAGACGAGGAGCTCACCGCGCTGCCCGTCGTCAAAGTGCT TCCCTCCGGTAAATACACTGGTACTGAGTTGAAGTCAGTGATTCGAATGTTACGGGGTTT ACTAGATCAAGGAATTCCATCTAAGGAGCTGGAGAATCTTCAAGAATTGAAACCTCTGGA TCAGTGTCTGATTGGACAGACTAAGGAAAACAGAAGGAAGAACCGATACAAAAACATACT TCCCTATGACGCAACAAGGGTGCCCCTGGGAGATGAAGGTGGATACATCAACGCCAGCTT CATTAAGATACCAGTGGGGAGAGAAGAGTTCGTCTACATTGCCTGCCAAGGACCTCTCCC GACAACCGTTGGAGATTTCTGGCAGATGATCTGGGAGCAGAAATCGACAGTGATAGCCAT GATGACCCAAGAAGTAGAAGGGGAAAAAATCAAATGCCAGCGCTACTGGCCCAACATTCT AGGCAAAACAACCATGGTCGGCGACCGGCTTCGACTGGCTCTTGTGAGAATGCAGCAGCT GAAGGGCTTTGTAGTAAGAGCAATGACCCTAGAAGATATTCAGACGGGAGAGGTGCGACA TATTTCTCATCTGAATTTCACGGCCTGGCCAGACCACGACACACCTTCTCAGCCGGACGA CTTGCTCACTTTCATCTCCTACATGAGACACGTTCACAGATCAGGCCCGATCATCACGCA CTGCAGTGCTGGCATTGGCCGCTCGGGGACCCTGATATGCATCGATGTGGTTCTAGGATT AATCAGTCAGGATCTCGAATTTGGCATCTCTGATGTAGTGCGCTGCATGAGACTGCAAAG ACACGGAATGGTTCAGACGGAGGATCAATATATTTTCTGCTATCAAGTCATCCTTTATGT CCTGACACGTCTTCAAGCTGAGGAAGAGCAAAAAGAGCAGCCCCAGCCTGTGCAGTGACG TGAAAAGAACAGGCTTCCAGATGTCTGTCCGTTTCAGTCCTCACTCCCAGCAGACGCGCC TGTTCTCTGTTTAAAATAAAGATCCCAGGGCAGCAAGTTCACACAATATCCTTAGGCTTA TTCTCCTCTACCTTAGAGGGGCCATTCGCAATAGCAATAAACAATGGTGAAATGCTGTAT TTTTACAGCTACTTTAACCTGTGAGAACAAAGATTTTTTTAACACTAACTGAATAACGCA GATCTTAGGGATGATTGAGGCAGCATTTGATTATAGTCGACGCTGTTACAGGGACACATC GAGTCTATTTTTAATGCACCAATCTTGTTTATAGCAAAATTATTTTCCAGTATTTTAATA AACTAGAGTTATTTTATAGGGGATACTTGAAACCAGTATTTAAGCTTTAAACGACGGTAA TACTGGCATAGAAAAAAAGTAGCAAACGTTTACTGTATCAATTTCTAATGTTTACTATCT AGAACTTCCTGTAATATATTTATATACTTTTTCATGAAAATGGAGATATCAAATGTTTGT AACTGCATTGTCTGTTATACATCATCTCACTTTGTAAATAAAAATACACCTTAAAACATA AAAAAAAAAAAA |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 2 entry(ies) | More info |
| Predicted RNA structure(s): 2 entry(ies) | Help | Less info |
| 1037-1189, - strand, RNAz p=0.995764 | |
| 1057-1151, - strand, RNAz p=0.972905 |
| Predicted RNA structure(s): 2 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 1037-1189, - strand, RNAz p=0.995764 | |
| 1057-1151, - strand, RNAz p=0.972905 |
| Aligned organism(s): 42 entry(ies) | More info |
| Aligned organism(s): 42 entry(ies) | Help | Less info |
| 4-154, gnl|bosTau2|chr6 (59726357-59726507) | |
| 4-154, gnl|Hg17|chr4 (88082039-88082189) | |
| 4-154, gnl|Mm7|chr5 (102777345-102777495) | |
| 246-471, gnl|bosTau2|chr28 (31441138-31440913) | |
| 246-471, gnl|Hg17|chr10 (45988245-45988020) | |
| 246-471, gnl|Mm7|chr14 (31060826-31061051) | |
| 579-799, gnl|bosTau2|chr6 (59732080-59732300) | |
| 579-799, gnl|canFam2|chr32 (13283676-13283943) | |
| 579-799, gnl|danRer3|chrUn (110643296-110643037) | |
| 579-799, gnl|dasNov1|scaffold_12704 (34684-34947) | |
| 579-799, gnl|echTel1|scaffold_325047 (119438-119709) | |
| 579-799, gnl|fr1|chrUn (162250397-162250161) | |
| 579-799, gnl|galGal2|chr4 (46395788-46395520) | |
| 579-799, gnl|hg17|chr4 (88088060-88088331) | |
| 579-799, gnl|Hg17|chr4 (88088096-88088316) | |
| 579-799, gnl|loxAfr1|scaffold_8050 (65633-65904) | |
| 579-799, gnl|mm7|chr5 (102782788-102783036) | |
| 579-799, gnl|Mm7|chr5 (102782806-102783026) | |
| 579-799, gnl|monDom2|scaffold_37 (16244452-16244191) | |
| 579-799, gnl|oryCun1|scaffold_194991 (6949-6679) | |
| 579-799, gnl|panTro1|chr3 (104074436-104074707) | |
| 579-799, gnl|rheMac2|chr5 (79766715-79766986) | |
| 579-799, gnl|rn3|chr14 (7303248-7302990) | |
| 579-799, gnl|tetNig1|chr4 (3644590-3644824) | |
| 579-799, gnl|xenTro1|scaffold_867 (121534-121265) | |
| 861-1005, gnl|bosTau2|chr6 (59735359-59735503) | |
| 861-1005, gnl|Hg17|chr4 (88092786-88092948) | |
| 861-1005, gnl|Mm7|chr5 (102786993-102787147) | |
| 1037-1565, gnl|bosTau2|chr6 (59735507-59736027) | |
| 1037-1565, gnl|canFam2|chr32 (13288660-13289222) | |
| 1037-1565, gnl|dasNov1|scaffold_12704 (37714-38325) | |
| 1037-1565, gnl|galGal2|chr4 (46394029-46393344) | |
| 1037-1565, gnl|hg17|chr4 (88092926-88093533) | |
| 1037-1565, gnl|Hg17|chr4 (88092957-88093486) | |
| 1037-1565, gnl|loxAfr1|scaffold_8050 (69155-69772) | |
| 1037-1565, gnl|mm7|chr5 (102787130-102787689) | |
| 1037-1565, gnl|Mm7|chr5 (102787151-102787661) | |
| 1037-1565, gnl|monDom2|scaffold_37 (16238129-16237482) | |
| 1037-1565, gnl|oryCun1|scaffold_100544 (1428-2010) | |
| 1037-1565, gnl|panTro1|chr3 (104078986-104079588) | |
| 1037-1565, gnl|rheMac2|chr5 (79771296-79771902) | |
| 1037-1565, gnl|rn3|chr14 (7298736-7298178) |
| Aligned organism(s): 42 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 4-154, gnl|bosTau2|chr6 (59726357-59726507) | |
| 4-154, gnl|Hg17|chr4 (88082039-88082189) | |
| 4-154, gnl|Mm7|chr5 (102777345-102777495) | |
| 246-471, gnl|bosTau2|chr28 (31441138-31440913) | |
| 246-471, gnl|Hg17|chr10 (45988245-45988020) | |
| 246-471, gnl|Mm7|chr14 (31060826-31061051) | |
| 579-799, gnl|bosTau2|chr6 (59732080-59732300) | |
| 579-799, gnl|canFam2|chr32 (13283676-13283943) | |
| 579-799, gnl|danRer3|chrUn (110643296-110643037) | |
| 579-799, gnl|dasNov1|scaffold_12704 (34684-34947) | |
| 579-799, gnl|echTel1|scaffold_325047 (119438-119709) | |
| 579-799, gnl|fr1|chrUn (162250397-162250161) | |
| 579-799, gnl|galGal2|chr4 (46395788-46395520) | |
| 579-799, gnl|hg17|chr4 (88088060-88088331) | |
| 579-799, gnl|Hg17|chr4 (88088096-88088316) | |
| 579-799, gnl|loxAfr1|scaffold_8050 (65633-65904) | |
| 579-799, gnl|mm7|chr5 (102782788-102783036) | |
| 579-799, gnl|Mm7|chr5 (102782806-102783026) | |
| 579-799, gnl|monDom2|scaffold_37 (16244452-16244191) | |
| 579-799, gnl|oryCun1|scaffold_194991 (6949-6679) | |
| 579-799, gnl|panTro1|chr3 (104074436-104074707) | |
| 579-799, gnl|rheMac2|chr5 (79766715-79766986) | |
| 579-799, gnl|rn3|chr14 (7303248-7302990) | |
| 579-799, gnl|tetNig1|chr4 (3644590-3644824) | |
| 579-799, gnl|xenTro1|scaffold_867 (121534-121265) | |
| 861-1005, gnl|bosTau2|chr6 (59735359-59735503) | |
| 861-1005, gnl|Hg17|chr4 (88092786-88092948) | |
| 861-1005, gnl|Mm7|chr5 (102786993-102787147) | |
| 1037-1565, gnl|bosTau2|chr6 (59735507-59736027) | |
| 1037-1565, gnl|canFam2|chr32 (13288660-13289222) | |
| 1037-1565, gnl|dasNov1|scaffold_12704 (37714-38325) | |
| 1037-1565, gnl|galGal2|chr4 (46394029-46393344) | |
| 1037-1565, gnl|hg17|chr4 (88092926-88093533) | |
| 1037-1565, gnl|Hg17|chr4 (88092957-88093486) | |
| 1037-1565, gnl|loxAfr1|scaffold_8050 (69155-69772) | |
| 1037-1565, gnl|mm7|chr5 (102787130-102787689) | |
| 1037-1565, gnl|Mm7|chr5 (102787151-102787661) | |
| 1037-1565, gnl|monDom2|scaffold_37 (16238129-16237482) | |
| 1037-1565, gnl|oryCun1|scaffold_100544 (1428-2010) | |
| 1037-1565, gnl|panTro1|chr3 (104078986-104079588) | |
| 1037-1565, gnl|rheMac2|chr5 (79771296-79771902) | |
| 1037-1565, gnl|rn3|chr14 (7298736-7298178) |
| Expressed library(ies): 26 entry(ies) | More info |
| Expressed library(ies): 26 entry(ies) | Help | Less info |
| clu (0.717875) | |
| kid (0.648677) | |
| sug (0.509165) | |
| ski (0.440205) | |
| ova (0.387397) | |
| gul (0.355177) | |
| fat (0.294855) | |
| cte (0.29274) | |
| ret (0.257467) | |
| eru (0.240096) | |
| pgl (0.236967) | |
| mgp (0.230681) | |
| cty (0.20816) | |
| aor (0.195274) | |
| cmu (0.186393) | |
| fbs (0.175346) | |
| cut (0.169924) | |
| cki (0.165235) | |
| bfe (0.149858) | |
| liv (0.146284) | |
| lin (0.145603) | |
| hlv (0.139256) | |
| lyg (0.133103) | |
| nmm (0.132802) | |
| ute (0.132784) | |
| bla (0.124347) |
| Expressed library(ies): 26 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| clu (0.717875) | |
| kid (0.648677) | |
| sug (0.509165) | |
| ski (0.440205) | |
| ova (0.387397) | |
| gul (0.355177) | |
| fat (0.294855) | |
| cte (0.29274) | |
| ret (0.257467) | |
| eru (0.240096) | |
| pgl (0.236967) | |
| mgp (0.230681) | |
| cty (0.20816) | |
| aor (0.195274) | |
| cmu (0.186393) | |
| fbs (0.175346) | |
| cut (0.169924) | |
| cki (0.165235) | |
| bfe (0.149858) | |
| liv (0.146284) | |
| lin (0.145603) | |
| hlv (0.139256) | |
| lyg (0.133103) | |
| nmm (0.132802) | |
| ute (0.132784) | |
| bla (0.124347) |