Non-Coding RNA Search

Ss1.1-Pig4-TMW8040G20.3

Sequence:


               
               CTTCCGCCCGCGGGGGAGCGGCGGCCGTGGCGGTGCAGGCAACCGGGCCGGGGCGCCGAG
GGATTGACGGAAGGGCGGGCGGCCGGGAGCCATGGAGCGCGGCCCCGGGGCCGGGGGGCG
CGGGCCGCAGCGGTTCTCCCTCTGCACAACATGGACACACGAGGCTGCGAGGCTCCTGAG
GGCTCAGCTTGGACCGCAATGGGGCTGGGCTGCAGCCTCCTAACGGGGCTCTTGTCTGGG
GCGGTGGCTGGGGGGTGCCCTGCCCCCTGCCCTTGTCTCCAAGCACCCTCTCCCGTCCCC
CACCGGGTGAGGCCTGCCCCAGGGCCTGGTGCCCACCATGAATGGCCTGTCAGTGACCGA
GCTCTGCTGCCTCTTTTGCTGCCCGCCCTGTCCTGGCCGCATTGCTGCCAAGCTCGCCTT
CCTGCCTCCGGAGCCCACCTATTCGCTGATGCCTGAGCCGGAACCTGGACCCGGCGGGGC
TGGGGCCGCCCCCTCGGGGACCCTGCGGGCCTCAGCTGGCACCCCTGGGCGCTGGAAGCT
CCACCTGATGGAGCGCGCTGACTTCCAGTACAGCCAGCGTGAGCTGGACACCATCGAGGT
CTTCCTGACCAAGAGCAGCCGCGGCAACCGCATCTCCTGCATGTACGTGCGCTGCGTGCC
AGGCGCCAGATATACGGTTCTCTTCTCGCATGGCAATGCAGTGGACCTGGGCCAGATGAG
CAGCTTCTACATCGGCCTGGGCACGCGCATCAACTGCAACATCTTCTCCTATGATTACTC
CGGCTACGGCGTCAGCTCTGGCAAGCCCTCGGAGAAGAACCTCTACGCCGACATTGATGC
TGCCTGGCAGGCCCTGCGTACCAGGTACGGCATCAGCCCGGACAGCATCGTCCTGTACGG
GCAGAGCATCGGCACTGTGCCCACTGTGGACCTGGCCTCGCGCTACGAGTGCGCCGCGGT
GGTGCTGCACTCCCCGCTCACCTCGGGCATGCGCGTCGCCTTCCCTGACACCAAGAAGAC
CTACTGCTTTGACGCGTTCCCCAACATCGAGAAGGTGTCCAAAATCACGTCGCCGGTGCT
CATCATCCACGGCACGGAGGACGAGGTGATCGACTTCTCGCATGGGCTGGCGCTCTACGA
GCGCTGCCCCAAGGCCGTGGAGCCCCTATGGGTAGAGGGCGCTGGGCACAACGACATCGA
GCTCTACAGCCAGTACCTGGAGCGCCTACGCCGCTTCATCTCCCAGGAGCTGCCCAGCCA
GCGCACCTAGCCTAACGGACCTCAGCGATAAGGCGGCGCCCGGACCTCGCCCCGGCGCTG
GGGGCTGCATGTGAATCCCCGGGCTCCCCAAGCACTGCCCTCCAGGCAGCCGGTAGGCAG
GCGTTGGGACCTGCCCCTCATCCAGGGGCGTGGACAATGTACAGGCAACGGAGCTACGCT
CTCCTTTCCTTTTGGAAGCAAAACGAAGGAAAAACGTGAAAACAAATTAAAGATTAAAAA
TTTTAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CTTCCGCCCGCGGGGGAGCGGCGGCCGTGGCGGTGCAGGCAACCGGGCCGGGGCGCCGAG
GGATTGACGGAAGGGCGGGCGGCCGGGAGCCATGGAGCGCGGCCCCGGGGCCGGGGGGCG
CGGGCCGCAGCGGTTCTCCCTCTGCACAACATGGACACACGAGGCTGCGAGGCTCCTGAG
GGCTCAGCTTGGACCGCAATGGGGCTGGGCTGCAGCCTCCTAACGGGGCTCTTGTCTGGG
GCGGTGGCTGGGGGGTGCCCTGCCCCCTGCCCTTGTCTCCAAGCACCCTCTCCCGTCCCC
CACCGGGTGAGGCCTGCCCCAGGGCCTGGTGCCCACCATGAATGGCCTGTCAGTGACCGA
GCTCTGCTGCCTCTTTTGCTGCCCGCCCTGTCCTGGCCGCATTGCTGCCAAGCTCGCCTT
CCTGCCTCCGGAGCCCACCTATTCGCTGATGCCTGAGCCGGAACCTGGACCCGGCGGGGC
TGGGGCCGCCCCCTCGGGGACCCTGCGGGCCTCAGCTGGCACCCCTGGGCGCTGGAAGCT
CCACCTGATGGAGCGCGCTGACTTCCAGTACAGCCAGCGTGAGCTGGACACCATCGAGGT
CTTCCTGACCAAGAGCAGCCGCGGCAACCGCATCTCCTGCATGTACGTGCGCTGCGTGCC
AGGCGCCAGATATACGGTTCTCTTCTCGCATGGCAATGCAGTGGACCTGGGCCAGATGAG
CAGCTTCTACATCGGCCTGGGCACGCGCATCAACTGCAACATCTTCTCCTATGATTACTC
CGGCTACGGCGTCAGCTCTGGCAAGCCCTCGGAGAAGAACCTCTACGCCGACATTGATGC
TGCCTGGCAGGCCCTGCGTACCAGGTACGGCATCAGCCCGGACAGCATCGTCCTGTACGG
GCAGAGCATCGGCACTGTGCCCACTGTGGACCTGGCCTCGCGCTACGAGTGCGCCGCGGT
GGTGCTGCACTCCCCGCTCACCTCGGGCATGCGCGTCGCCTTCCCTGACACCAAGAAGAC
CTACTGCTTTGACGCGTTCCCCAACATCGAGAAGGTGTCCAAAATCACGTCGCCGGTGCT
CATCATCCACGGCACGGAGGACGAGGTGATCGACTTCTCGCATGGGCTGGCGCTCTACGA
GCGCTGCCCCAAGGCCGTGGAGCCCCTATGGGTAGAGGGCGCTGGGCACAACGACATCGA
GCTCTACAGCCAGTACCTGGAGCGCCTACGCCGCTTCATCTCCCAGGAGCTGCCCAGCCA
GCGCACCTAGCCTAACGGACCTCAGCGATAAGGCGGCGCCCGGACCTCGCCCCGGCGCTG
GGGGCTGCATGTGAATCCCCGGGCTCCCCAAGCACTGCCCTCCAGGCAGCCGGTAGGCAG
GCGTTGGGACCTGCCCCTCATCCAGGGGCGTGGACAATGTACAGGCAACGGAGCTACGCT
CTCCTTTCCTTTTGGAAGCAAAACGAAGGAAAAACGTGAAAACAAATTAAAGATTAAAAA
TTTTAAAAAAAA

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|57102220|ref|XP_542194.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|57102220|ref|XP_542194.1|

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               558-750, - strand, RNAz p=0.928289

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               558-750, - strand, RNAz p=0.928289

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               366-1254, gnl|bosTau2|chr20 (18998362-18997499)
               


               
               1387-1507, gnl|bosTau2|chr2 (69701206-69701328)
               

               
               1387-1507, gnl|Hg17|chr17 (20688273-20688384)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               366-1254, gnl|bosTau2|chr20 (18998362-18997499)
               


               
               1387-1507, gnl|bosTau2|chr2 (69701206-69701328)
               

               
               1387-1507, gnl|Hg17|chr17 (20688273-20688384)

Expressed library(ies): 28 entry(ies)

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Expressed library(ies): 28 entry(ies)

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               clu (0.957167)
               

               
               jej (0.593531)
               

               
               hyp (0.42851)
               

               
               elu (0.385356)
               

               
               fty (0.351679)
               

               
               fbs (0.350693)
               

               
               cty (0.31224)
               

               
               pty (0.285429)
               

               
               cga (0.279096)
               

               
               nca (0.273748)
               

               
               fce (0.271592)
               

               
               eru (0.240096)
               

               
               ecc (0.23007)
               

               
               nms (0.213858)
               

               
               mcp (0.170648)
               

               
               cje (0.165235)
               

               
               nco (0.161734)
               

               
               csp (0.161186)
               

               
               eli (0.151814)
               

               
               cag (0.151194)
               

               
               hlv (0.139256)
               

               
               cov (0.132153)
               

               
               ese (0.126502)
               

               
               eep (0.122564)
               

               
               cly (0.120642)
               

               
               ebs (0.118301)
               

               
               nbm (0.0993246)
               

               
               eje (0.0988338)

Expressed library(ies): 28 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               clu (0.957167)
               

               
               jej (0.593531)
               

               
               hyp (0.42851)
               

               
               elu (0.385356)
               

               
               fty (0.351679)
               

               
               fbs (0.350693)
               

               
               cty (0.31224)
               

               
               pty (0.285429)
               

               
               cga (0.279096)
               

               
               nca (0.273748)
               

               
               fce (0.271592)
               

               
               eru (0.240096)
               

               
               ecc (0.23007)
               

               
               nms (0.213858)
               

               
               mcp (0.170648)
               

               
               cje (0.165235)
               

               
               nco (0.161734)
               

               
               csp (0.161186)
               

               
               eli (0.151814)
               

               
               cag (0.151194)
               

               
               hlv (0.139256)
               

               
               cov (0.132153)
               

               
               ese (0.126502)
               

               
               eep (0.122564)
               

               
               cly (0.120642)
               

               
               ebs (0.118301)
               

               
               nbm (0.0993246)
               

               
               eje (0.0988338)

	366-1254, gnl\|bosTau2\|chr20 (18998362-18997499)

	1387-1507, gnl\|bosTau2\|chr2 (69701206-69701328)
	1387-1507, gnl\|Hg17\|chr17 (20688273-20688384)

	clu (0.957167)
	jej (0.593531)
	hyp (0.42851)
	elu (0.385356)
	fty (0.351679)
	fbs (0.350693)
	cty (0.31224)
	pty (0.285429)
	cga (0.279096)
	nca (0.273748)
	fce (0.271592)
	eru (0.240096)
	ecc (0.23007)
	nms (0.213858)
	mcp (0.170648)
	cje (0.165235)
	nco (0.161734)
	csp (0.161186)
	eli (0.151814)
	cag (0.151194)
	hlv (0.139256)
	cov (0.132153)
	ese (0.126502)
	eep (0.122564)
	cly (0.120642)
	ebs (0.118301)
	nbm (0.0993246)
	eje (0.0988338)