Ss1.1-Pig4-TMW8040H04.3
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| TCCCTAACCCGCCCCGCCCAGGCGGCTGCCCGTGACCTGCCTGGGCGCAGGGAACGGAGA GCCGGAAGGGGCAAGACGAGTTCAGTTCACCATGGGGCTGTTTGGTAAAACCCAAGAGAA GCCGCCCAAAGAGCTGGTCAATGAATGGTCATTGAAAATAAGAAAGGAAATGAGAGTTGT TGACAGGCAAATAAGAGATATCCAAAGAGAAGAAGAAAAAGTGAAACGATCTGTAAAAGA TGCTGCCAAGAAGGGTCAGAAGGATGTCTGTGTGGTTCTAGCCAAGGAGATGATCCGGTC GAGAAAGGCCGTGAGCAAGCTCTATGCATCCAAAGCGCACATGAACTCCGTGCTCATGGG GATGAAGAACCAGCTGGCGGTTTTGCGAGTGGCTGGTTCCCTGCAGAAGAGCACAGAGGT GATGAAGGCCATGCAGAGTCTAGTGAAGATCCCAGAAATCCAGGCCACCATGCGAGAGCT GTCCAAAGAGATGATGAAGGCTGGGATCATAGAAGAGATGTTAGAGGACACTTTTGAAAG CATGGACGATCAGGAAGAAATGGAAGAAGCAGCAGAAATGGAAATTGACAAAATTCTGTT TGAAATCACCGCAGGGGCCTTGGGCAAAGCACCTAGTAAAGTGACCGACGCCCTCCCAGA GCCTGAACCTCCAGGAGCCATGGCTGCATCGGAAGATGAGGAGGAGGAAGAGGCCCTGGA GGCCATGCAGTCCCGTCTGGCCACACTCCGCAGCTAGGACCGCCCGGCTGGGCCACAGGC TCTCTTCCTGGCCCAGGCGTCACCATTTTATTTGTCTCTTGCACTACACTCCTGGGGGAG GCTCTGCATTCTGGAGAATGTTCTCTGCTAATCTCTCTTCACTCTCTGCAGAGGTTTGGG ATCTCAGTGGGATGGTTCTGGAGAGGTGGTGTAATAAATGCATCATCTTCAGGAGTATAA ACAGAAGTATCTCTTGAGGGGCGAGGGCAAAGAAATCTCACGAAGCGCTTCTGAGGATAG ACTTGATTGCCTGAATGTTGAGGACTGTACATTTTTTTTTGTCTGTAAAACACTATATAA ATGGATTTTAATAAATTTCTGCTTTAACATTTGGTC |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| TCCCTAACCCGCCCCGCCCAGGCGGCTGCCCGTGACCTGCCTGGGCGCAGGGAACGGAGA GCCGGAAGGGGCAAGACGAGTTCAGTTCACCATGGGGCTGTTTGGTAAAACCCAAGAGAA GCCGCCCAAAGAGCTGGTCAATGAATGGTCATTGAAAATAAGAAAGGAAATGAGAGTTGT TGACAGGCAAATAAGAGATATCCAAAGAGAAGAAGAAAAAGTGAAACGATCTGTAAAAGA TGCTGCCAAGAAGGGTCAGAAGGATGTCTGTGTGGTTCTAGCCAAGGAGATGATCCGGTC GAGAAAGGCCGTGAGCAAGCTCTATGCATCCAAAGCGCACATGAACTCCGTGCTCATGGG GATGAAGAACCAGCTGGCGGTTTTGCGAGTGGCTGGTTCCCTGCAGAAGAGCACAGAGGT GATGAAGGCCATGCAGAGTCTAGTGAAGATCCCAGAAATCCAGGCCACCATGCGAGAGCT GTCCAAAGAGATGATGAAGGCTGGGATCATAGAAGAGATGTTAGAGGACACTTTTGAAAG CATGGACGATCAGGAAGAAATGGAAGAAGCAGCAGAAATGGAAATTGACAAAATTCTGTT TGAAATCACCGCAGGGGCCTTGGGCAAAGCACCTAGTAAAGTGACCGACGCCCTCCCAGA GCCTGAACCTCCAGGAGCCATGGCTGCATCGGAAGATGAGGAGGAGGAAGAGGCCCTGGA GGCCATGCAGTCCCGTCTGGCCACACTCCGCAGCTAGGACCGCCCGGCTGGGCCACAGGC TCTCTTCCTGGCCCAGGCGTCACCATTTTATTTGTCTCTTGCACTACACTCCTGGGGGAG GCTCTGCATTCTGGAGAATGTTCTCTGCTAATCTCTCTTCACTCTCTGCAGAGGTTTGGG ATCTCAGTGGGATGGTTCTGGAGAGGTGGTGTAATAAATGCATCATCTTCAGGAGTATAA ACAGAAGTATCTCTTGAGGGGCGAGGGCAAAGAAATCTCACGAAGCGCTTCTGAGGATAG ACTTGATTGCCTGAATGTTGAGGACTGTACATTTTTTTTTGTCTGTAAAACACTATATAA ATGGATTTTAATAAATTTCTGCTTTAACATTTGGTC |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 6 entry(ies) | More info |
| Predicted RNA structure(s): 6 entry(ies) | Help | Less info |
| Predicted RNA structure(s): 6 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| Homologous human UTR: 2 entry(ies) | More info |
| Homologous human UTR: 2 entry(ies) | Help | Less info |
Human gene identifier and UTR site,
human gene reading direction
human gene reading direction
| 3' of NM_016079, + | |
| 3' of NM_016079, - |
| Aligned organism(s): 40 entry(ies) | More info |
| Aligned organism(s): 40 entry(ies) | Help | Less info |
| 11-138, gnl|bosTau2|chr11 (35273785-35273658) | |
| 11-138, gnl|canFam2|chr17 (41665934-41665687) | |
| 11-138, gnl|dasNov1|scaffold_122938 (1916-2147) | |
| 11-138, gnl|echTel1|scaffold_283080 (3968-4215) | |
| 11-138, gnl|galGal2|chr4 (85704065-85704285) | |
| 11-138, gnl|hg17|chr2 (86702057-86702311) | |
| 11-138, gnl|Hg17|chr2 (86702211-86702083) | |
| 11-138, gnl|mm7|chr6 (71561983-71561745) | |
| 11-138, gnl|Mm7|chr6 (71561841-71561966) | |
| 11-138, gnl|oryCun1|scaffold_211666 (84827-84573) | |
| 11-138, gnl|rheMac2|chr13 (87190981-87191235) | |
| 11-138, gnl|rn3|chr4 (105056742-105056504) | |
| 159-463, gnl|bosTau2|chr16 (51998586-51998888) | |
| 159-463, gnl|Mm7|chr18 (6761090-6761392) | |
| 196-377, gnl|bosTau2|chr11 (35251023-35250842) | |
| 196-377, gnl|canFam2|chr17 (41704843-41704622) | |
| 196-377, gnl|danRer3|chrNA (216217536-216217747) | |
| 196-377, gnl|echTel1|scaffold_166347 (1955-2169) | |
| 196-377, gnl|fr1|chrUn (69870005-69870217) | |
| 196-377, gnl|galGal2|chr4 (85702510-85702707) | |
| 196-377, gnl|hg17|chr2 (86667995-86668208) | |
| 196-377, gnl|Hg17|chr2 (86668180-86667999) | |
| 196-377, gnl|mm7|chr6 (71579013-71578801) | |
| 196-377, gnl|Mm7|chr6 (71578826-71579007) | |
| 196-377, gnl|monDom2|scaffold_63 (810518-810729) | |
| 196-377, gnl|oryCun1|scaffold_168240 (4730-4943) | |
| 196-377, gnl|panTro1|chr12 (89550500-89550713) | |
| 196-377, gnl|rheMac2|chr13 (87106556-87106769) | |
| 196-377, gnl|rn3|chr4 (105082495-105082283) | |
| 196-377, gnl|tetNig1|chr10 (5440962-5440773) | |
| 196-377, gnl|xenTro1|scaffold_149 (672139-672338) | |
| 470-795, gnl|bosTau2|chr16 (51998937-51999263) | |
| 470-795, gnl|Hg17|chr12 (70515409-70515056) | |
| 470-795, gnl|Mm7|chr18 (6761399-6761726) | |
| 612-794, gnl|bosTau2|chr11 (35234161-35233977) | |
| 612-794, gnl|Hg17|chr2 (86644733-86644566) | |
| 612-794, gnl|Mm7|chr6 (71597569-71597758) | |
| 807-1116, gnl|bosTau2|chr11 (35233941-35233619) | |
| 807-1116, gnl|Hg17|chr2 (86644535-86644223) | |
| 807-1116, gnl|Mm7|chr6 (71597797-71598104) |
| Aligned organism(s): 40 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 11-138, gnl|bosTau2|chr11 (35273785-35273658) | |
| 11-138, gnl|canFam2|chr17 (41665934-41665687) | |
| 11-138, gnl|dasNov1|scaffold_122938 (1916-2147) | |
| 11-138, gnl|echTel1|scaffold_283080 (3968-4215) | |
| 11-138, gnl|galGal2|chr4 (85704065-85704285) | |
| 11-138, gnl|hg17|chr2 (86702057-86702311) | |
| 11-138, gnl|Hg17|chr2 (86702211-86702083) | |
| 11-138, gnl|mm7|chr6 (71561983-71561745) | |
| 11-138, gnl|Mm7|chr6 (71561841-71561966) | |
| 11-138, gnl|oryCun1|scaffold_211666 (84827-84573) | |
| 11-138, gnl|rheMac2|chr13 (87190981-87191235) | |
| 11-138, gnl|rn3|chr4 (105056742-105056504) | |
| 159-463, gnl|bosTau2|chr16 (51998586-51998888) | |
| 159-463, gnl|Mm7|chr18 (6761090-6761392) | |
| 196-377, gnl|bosTau2|chr11 (35251023-35250842) | |
| 196-377, gnl|canFam2|chr17 (41704843-41704622) | |
| 196-377, gnl|danRer3|chrNA (216217536-216217747) | |
| 196-377, gnl|echTel1|scaffold_166347 (1955-2169) | |
| 196-377, gnl|fr1|chrUn (69870005-69870217) | |
| 196-377, gnl|galGal2|chr4 (85702510-85702707) | |
| 196-377, gnl|hg17|chr2 (86667995-86668208) | |
| 196-377, gnl|Hg17|chr2 (86668180-86667999) | |
| 196-377, gnl|mm7|chr6 (71579013-71578801) | |
| 196-377, gnl|Mm7|chr6 (71578826-71579007) | |
| 196-377, gnl|monDom2|scaffold_63 (810518-810729) | |
| 196-377, gnl|oryCun1|scaffold_168240 (4730-4943) | |
| 196-377, gnl|panTro1|chr12 (89550500-89550713) | |
| 196-377, gnl|rheMac2|chr13 (87106556-87106769) | |
| 196-377, gnl|rn3|chr4 (105082495-105082283) | |
| 196-377, gnl|tetNig1|chr10 (5440962-5440773) | |
| 196-377, gnl|xenTro1|scaffold_149 (672139-672338) | |
| 470-795, gnl|bosTau2|chr16 (51998937-51999263) | |
| 470-795, gnl|Hg17|chr12 (70515409-70515056) | |
| 470-795, gnl|Mm7|chr18 (6761399-6761726) | |
| 612-794, gnl|bosTau2|chr11 (35234161-35233977) | |
| 612-794, gnl|Hg17|chr2 (86644733-86644566) | |
| 612-794, gnl|Mm7|chr6 (71597569-71597758) | |
| 807-1116, gnl|bosTau2|chr11 (35233941-35233619) | |
| 807-1116, gnl|Hg17|chr2 (86644535-86644223) | |
| 807-1116, gnl|Mm7|chr6 (71597797-71598104) |
| Expressed library(ies): 44 entry(ies) | More info |
| Expressed library(ies): 44 entry(ies) | Help | Less info |
| cki (1.15664) | |
| che (0.68157) | |
| duo (0.518403) | |
| ssp (0.406559) | |
| sug (0.381874) | |
| nep (0.36785) | |
| sto (0.359648) | |
| cut (0.339847) | |
| nco (0.323468) | |
| mga (0.32041) | |
| cst (0.280073) | |
| cov (0.264306) | |
| eru (0.240096) | |
| cbe (0.239234) | |
| pgl (0.236967) | |
| jca (0.22792) | |
| nms (0.213858) | |
| tes (0.207814) | |
| hea (0.204499) | |
| jej (0.197844) | |
| nlu (0.191681) | |
| cmu (0.186393) | |
| ill (0.175593) | |
| ton (0.1755) | |
| fbs (0.175346) | |
| sin (0.174948) | |
| fhi (0.169578) | |
| tbr (0.154178) | |
| cag (0.151194) | |
| pty (0.142714) | |
| csk (0.140746) | |
| ste (0.135208) | |
| nmm (0.132802) | |
| kid (0.129735) | |
| ova (0.129132) | |
| ese (0.126502) | |
| bla (0.124347) | |
| tra (0.123092) | |
| clu (0.119646) | |
| ebs (0.118301) | |
| med (0.116252) | |
| ecc (0.115035) | |
| spc (0.113366) | |
| ldo (0.0970026) |
| Expressed library(ies): 44 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| cki (1.15664) | |
| che (0.68157) | |
| duo (0.518403) | |
| ssp (0.406559) | |
| sug (0.381874) | |
| nep (0.36785) | |
| sto (0.359648) | |
| cut (0.339847) | |
| nco (0.323468) | |
| mga (0.32041) | |
| cst (0.280073) | |
| cov (0.264306) | |
| eru (0.240096) | |
| cbe (0.239234) | |
| pgl (0.236967) | |
| jca (0.22792) | |
| nms (0.213858) | |
| tes (0.207814) | |
| hea (0.204499) | |
| jej (0.197844) | |
| nlu (0.191681) | |
| cmu (0.186393) | |
| ill (0.175593) | |
| ton (0.1755) | |
| fbs (0.175346) | |
| sin (0.174948) | |
| fhi (0.169578) | |
| tbr (0.154178) | |
| cag (0.151194) | |
| pty (0.142714) | |
| csk (0.140746) | |
| ste (0.135208) | |
| nmm (0.132802) | |
| kid (0.129735) | |
| ova (0.129132) | |
| ese (0.126502) | |
| bla (0.124347) | |
| tra (0.123092) | |
| clu (0.119646) | |
| ebs (0.118301) | |
| med (0.116252) | |
| ecc (0.115035) | |
| spc (0.113366) | |
| ldo (0.0970026) |