Ss1.1-Pig4-TMW8040H06.5
|
AGACGCTAGGCGGCCCCTCGGCGGTCGGAAGGGGAGTTCAAGGAGACCCGGGCGACGCGA
CTTCGGGCATCTCCTCGGTCCGGGCTACTGCCATCATGCCGGGCATAGTGGAGCTGCCCA
CTCTGGAGGATCTGAAAGTGCAGGAGGTGAAAGTCAGTTCTTCTGTGCTCAAAGCCGCAG
CCCATCACTACGGAGCTCAGTGCGATAAGCCCAACAAGGAGTTCATGCTCTGCCGGTGGG
AAGAGAAGGACCCAAGGCGGTGTTTAGAGGAAGGCAAGCTCGTCAACCAATGCGCCCTGG
ACTTCTTTAGGCAGATAAAGCGGCACTGTGCAGAGCCTTTTACAGAATACTGGACCTGCA
TTGATTACTCCGGCCTGCAGCTCTTTCGTCACTGTCGCAAGCAGCAGGCAAAGTTTGATG
AGTGTGTGCTGGACAAACTGGGCTGGGTGCGGCCTGACCTGGGGGAGCTGTCAAAGGTCA
CCAAAGTGAAAACAGATCGGCCTTTACCAGAGAATCCTTATCACTCAAGAGCAAGGCCAG
AGCCCAACCCTGAGGCAGAAGGCGATCTGAAGCCTGCCAAACATGGCAGCCGCCTCTTTT
TCTGGACCATGTGAGGACGGGTCCATGGCCCACACCCAGTCACGTGCCCAGGCAGTGGTC
GATGTAAACTCTCCTGCAGTTCACATCAACCGATAGAGGGTTCTTTCCGGGATCATGAAC
ATTAACAAAAACGTTAATTTATGTGACTTGGCAGTTATTCTATACCATTTCCTGCCCATT
AAAAATTTTAAAGGAAAAAAAAAA
|
Blue-coloured subsequences are predicted RNA structures by RNAz
|
AGACGCTAGGCGGCCCCTCGGCGGTCGGAAGGGGAGTTCAAGGAGACCCGGGCGACGCGA
CTTCGGGCATCTCCTCGGTCCGGGCTACTGCCATCATGCCGGGCATAGTGGAGCTGCCCA
CTCTGGAGGATCTGAAAGTGCAGGAGGTGAAAGTCAGTTCTTCTGTGCTCAAAGCCGCAG
CCCATCACTACGGAGCTCAGTGCGATAAGCCCAACAAGGAGTTCATGCTCTGCCGGTGGG
AAGAGAAGGACCCAAGGCGGTGTTTAGAGGAAGGCAAGCTCGTCAACCAATGCGCCCTGG
ACTTCTTTAGGCAGATAAAGCGGCACTGTGCAGAGCCTTTTACAGAATACTGGACCTGCA
TTGATTACTCCGGCCTGCAGCTCTTTCGTCACTGTCGCAAGCAGCAGGCAAAGTTTGATG
AGTGTGTGCTGGACAAACTGGGCTGGGTGCGGCCTGACCTGGGGGAGCTGTCAAAGGTCA
CCAAAGTGAAAACAGATCGGCCTTTACCAGAGAATCCTTATCACTCAAGAGCAAGGCCAG
AGCCCAACCCTGAGGCAGAAGGCGATCTGAAGCCTGCCAAACATGGCAGCCGCCTCTTTT
TCTGGACCATGTGAGGACGGGTCCATGGCCCACACCCAGTCACGTGCCCAGGCAGTGGTC
GATGTAAACTCTCCTGCAGTTCACATCAACCGATAGAGGGTTCTTTCCGGGATCATGAAC
ATTAACAAAAACGTTAATTTATGTGACTTGGCAGTTATTCTATACCATTTCCTGCCCATT
AAAAATTTTAAAGGAAAAAAAAAA
|
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
|
145-314, gnl|bosTau2|chr11 (73976727-73976896) |
|
145-314, gnl|canFam2|chr9 (63751842-63751729) |
|
145-314, gnl|danRer3|chr10 (3972055-3972167) |
|
145-314, gnl|dasNov1|scaffold_42632 (6862-6749) |
|
145-314, gnl|echTel1|scaffold_289755 (48669-48556) |
|
145-314, gnl|fr1|chrUn (202255232-202255120) |
|
145-314, gnl|hg17|chr9 (121994075-121994188) |
|
145-314, gnl|Hg17|chr9 (121994243-121994074) |
|
145-314, gnl|loxAfr1|scaffold_6706 (22492-22605) |
|
145-314, gnl|mm7|chr2 (36051658-36051771) |
|
145-314, gnl|Mm7|chr2 (36051826-36051657) |
|
145-314, gnl|monDom2|scaffold_38 (15223485-15223598) |
|
145-314, gnl|oryCun1|scaffold_197877 (54705-54592) |
|
145-314, gnl|panTro1|chr11_random (4123882-4123769) |
|
145-314, gnl|rheMac2|chr15 (13854531-13854418) |
|
145-314, gnl|rn3|chr3 (15053191-15053304) |
|
145-314, gnl|tetNig1|chr4 (1131864-1131751) |
|
145-314, gnl|xenTro1|scaffold_871 (24112-24225) |
| |
|
475-797, gnl|bosTau2|chr11 (73986384-73986705) |
|
475-797, gnl|Hg17|chr9 (121986213-121985891) |
|
475-797, gnl|Mm7|chr2 (36043954-36043637) |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
|
145-314, gnl|bosTau2|chr11 (73976727-73976896) |
|
145-314, gnl|canFam2|chr9 (63751842-63751729) |
|
145-314, gnl|danRer3|chr10 (3972055-3972167) |
|
145-314, gnl|dasNov1|scaffold_42632 (6862-6749) |
|
145-314, gnl|echTel1|scaffold_289755 (48669-48556) |
|
145-314, gnl|fr1|chrUn (202255232-202255120) |
|
145-314, gnl|hg17|chr9 (121994075-121994188) |
|
145-314, gnl|Hg17|chr9 (121994243-121994074) |
|
145-314, gnl|loxAfr1|scaffold_6706 (22492-22605) |
|
145-314, gnl|mm7|chr2 (36051658-36051771) |
|
145-314, gnl|Mm7|chr2 (36051826-36051657) |
|
145-314, gnl|monDom2|scaffold_38 (15223485-15223598) |
|
145-314, gnl|oryCun1|scaffold_197877 (54705-54592) |
|
145-314, gnl|panTro1|chr11_random (4123882-4123769) |
|
145-314, gnl|rheMac2|chr15 (13854531-13854418) |
|
145-314, gnl|rn3|chr3 (15053191-15053304) |
|
145-314, gnl|tetNig1|chr4 (1131864-1131751) |
|
145-314, gnl|xenTro1|scaffold_871 (24112-24225) |
| |
|
475-797, gnl|bosTau2|chr11 (73986384-73986705) |
|
475-797, gnl|Hg17|chr9 (121986213-121985891) |
|
475-797, gnl|Mm7|chr2 (36043954-36043637) |
|
hlv (0.696282) |
|
cov (0.528611) |
|
pro (0.512033) |
|
fhi (0.508733) |
|
ece (0.45861) |
|
ssp (0.406559) |
|
ute (0.398353) |
|
cly (0.361925) |
|
lun (0.300978) |
|
ldo (0.291008) |
|
cst (0.280073) |
|
fce (0.271592) |
|
ese (0.253004) |
|
nms (0.213858) |
|
mas (0.210305) |
|
hea (0.204499) |
|
jej (0.197844) |
|
fcc (0.197785) |
|
col (0.195008) |
|
nlu (0.191681) |
|
nep (0.183925) |
|
fty (0.17584) |
|
ill (0.175593) |
|
sin (0.174948) |
|
duo (0.172801) |
|
mcp (0.170648) |
|
eye (0.170503) |
|
nje (0.16592) |
|
cki (0.165235) |
|
nco (0.161734) |
|
csp (0.161186) |
|
cag (0.151194) |
|
spl (0.143184) |
|
hyp (0.142837) |
|
pty (0.142714) |
|
lnt (0.142308) |
|
nca (0.136874) |
|
che (0.136314) |
|
pla (0.133672) |
|
lyg (0.133103) |
|
kid (0.129735) |
|
eep (0.122564) |
|
pgl (0.118483) |
|
ebs (0.118301) |
|
med (0.116252) |
|
ecc (0.115035) |
|
jca (0.11396) |
|
eje (0.0988338) |
|
hlv (0.696282) |
|
cov (0.528611) |
|
pro (0.512033) |
|
fhi (0.508733) |
|
ece (0.45861) |
|
ssp (0.406559) |
|
ute (0.398353) |
|
cly (0.361925) |
|
lun (0.300978) |
|
ldo (0.291008) |
|
cst (0.280073) |
|
fce (0.271592) |
|
ese (0.253004) |
|
nms (0.213858) |
|
mas (0.210305) |
|
hea (0.204499) |
|
jej (0.197844) |
|
fcc (0.197785) |
|
col (0.195008) |
|
nlu (0.191681) |
|
nep (0.183925) |
|
fty (0.17584) |
|
ill (0.175593) |
|
sin (0.174948) |
|
duo (0.172801) |
|
mcp (0.170648) |
|
eye (0.170503) |
|
nje (0.16592) |
|
cki (0.165235) |
|
nco (0.161734) |
|
csp (0.161186) |
|
cag (0.151194) |
|
spl (0.143184) |
|
hyp (0.142837) |
|
pty (0.142714) |
|
lnt (0.142308) |
|
nca (0.136874) |
|
che (0.136314) |
|
pla (0.133672) |
|
lyg (0.133103) |
|
kid (0.129735) |
|
eep (0.122564) |
|
pgl (0.118483) |
|
ebs (0.118301) |
|
med (0.116252) |
|
ecc (0.115035) |
|
jca (0.11396) |
|
eje (0.0988338) |
