Non-Coding RNA Search

Ss1.1-Pig4-TMW8040H08.5

Sequence:


               
               CTCTCTCTCTCTCTCTCTCTCTCCCTCTCTCCCTCTCTCTTTTTTCCTCTCTCTCCCTCT
CTCTAGCCTGGGGCTTGAATTTGCATGTCTAATTCATTTACTCACCATATTTGAATTGGC
CTGAACAGATGTAAATCGGGAAGGATGGGAAAAACTGCAGTCATCAACAATGATTAATCA
GCTGTTGCAGGCAGTGTCTTAAGGAGACTGGTAGGAGGAGGCATGGAAACCAAAAGGCCG
TGTGTTTAGAAGCCTAATTGTCACATCAAGCATCATTGTCCCCATGCAACAACCACCACC
TTATACATCACTTCCTGTTTTATGCAGCTCAAAAACATAGACTGAAGATTTATTTTTAAT
ATGTTGACTTTATTTCTGAGCAAAGCATCGGTCATGTGTGTATTTTTCCATAGTCCCACC
TTGGAGCATTTATGTAGACATTGTAAATAAATTTTGTGCAAAAAGGACTGGAAAAATGAA
CTGTATTATTGCAATTTTTTTTTGTAAAAGTAGCAGTTTGGTATGAGTTGGCATGCATAC
AAGATTTACTAAGTGGGATAAGCTAATTATACTTTTTGTTGTGGATAAACAAATGCTTGT
TGATAGCCTTTTTCTATCAAGAAACCAAGGAGCTAATTATTAATAACAATCATTGCACAC
TGAGTCTTAGCGTTTCTGATGGAAACAGTTTGGATTGTATAATAACGCCAAGCCCAGTTG
TAGTTGTTTGAGTGCAGTAATGAAATCTGAATCTAAAATAAAAACAAGATTATTTTTGTC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CTCTCTCTCTCTCTCTCTCTCTCCCTCTCTCCCTCTCTCTTTTTTCCTCTCTCTCCCTCT
CTCTAGCCTGGGGCTTGAATTTGCATGTCTAATTCATTTACTCACCATATTTGAATTGGC
CTGAACAGATGTAAATCGGGAAGGATGGGAAAAACTGCAGTCATCAACAATGATTAATCA
GCTGTTGCAGGCAGTGTCTTAAGGAGACTGGTAGGAGGAGGCATGGAAACCAAAAGGCCG
TGTGTTTAGAAGCCTAATTGTCACATCAAGCATCATTGTCCCCATGCAACAACCACCACC
TTATACATCACTTCCTGTTTTATGCAGCTCAAAAACATAGACTGAAGATTTATTTTTAAT
ATGTTGACTTTATTTCTGAGCAAAGCATCGGTCATGTGTGTATTTTTCCATAGTCCCACC
TTGGAGCATTTATGTAGACATTGTAAATAAATTTTGTGCAAAAAGGACTGGAAAAATGAA
CTGTATTATTGCAATTTTTTTTTGTAAAAGTAGCAGTTTGGTATGAGTTGGCATGCATAC
AAGATTTACTAAGTGGGATAAGCTAATTATACTTTTTGTTGTGGATAAACAAATGCTTGT
TGATAGCCTTTTTCTATCAAGAAACCAAGGAGCTAATTATTAATAACAATCATTGCACAC
TGAGTCTTAGCGTTTCTGATGGAAACAGTTTGGATTGTATAATAACGCCAAGCCCAGTTG
TAGTTGTTTGAGTGCAGTAATGAAATCTGAATCTAAAATAAAAACAAGATTATTTTTGTC

Predicted RNA structure(s): 2 entry(ies)

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Predicted RNA structure(s): 2 entry(ies)

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               100-294, - strand, RNAz p=0.82709
               

               
               643-762, + strand, RNAz p=0.543178

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               100-294, - strand, RNAz p=0.82709
               

               
               643-762, + strand, RNAz p=0.543178

Predicted microRNA(s): 1 entry(ies)

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Predicted microRNA(s): 1 entry(ies)

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               661-792, - strand, RNAmicro p=0.972962

Predicted microRNA(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted microRNA,
PigEST conread reading direction of prediction,
miRNA classificator p of RNAmicro


               
               661-792, - strand, RNAmicro p=0.972962

Homologous human UTR: 1 entry(ies)

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Homologous human UTR: 1 entry(ies)

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               3' of NM_002398, +

Homologous human UTR: 1 entry(ies)

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Human gene identifier and UTR site,
human gene reading direction


               
               3' of NM_002398, +

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               21-780, gnl|bosTau2|chr11 (46915251-46914484)
               

               
               21-780, gnl|Hg17|chr2 (66710782-66711541)
               

               
               21-780, gnl|Mm7|chr11 (18833137-18832377)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               21-780, gnl|bosTau2|chr11 (46915251-46914484)
               

               
               21-780, gnl|Hg17|chr2 (66710782-66711541)
               

               
               21-780, gnl|Mm7|chr11 (18833137-18832377)

Expressed library(ies): 11 entry(ies)

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Expressed library(ies): 11 entry(ies)

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               sag (0.36543)
               

               
               lyg (0.266205)
               

               
               sug (0.254582)
               

               
               mgp (0.230681)
               

               
               aor (0.195274)
               

               
               lin (0.145603)
               

               
               hlv (0.139256)
               

               
               kid (0.129735)
               

               
               bla (0.124347)
               

               
               spc (0.113366)
               

               
               eje (0.0988338)

Expressed library(ies): 11 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               sag (0.36543)
               

               
               lyg (0.266205)
               

               
               sug (0.254582)
               

               
               mgp (0.230681)
               

               
               aor (0.195274)
               

               
               lin (0.145603)
               

               
               hlv (0.139256)
               

               
               kid (0.129735)
               

               
               bla (0.124347)
               

               
               spc (0.113366)
               

               
               eje (0.0988338)

	100-294, - strand, RNAz p=0.82709
	643-762, + strand, RNAz p=0.543178

	21-780, gnl\|bosTau2\|chr11 (46915251-46914484)
	21-780, gnl\|Hg17\|chr2 (66710782-66711541)
	21-780, gnl\|Mm7\|chr11 (18833137-18832377)

	sag (0.36543)
	lyg (0.266205)
	sug (0.254582)
	mgp (0.230681)
	aor (0.195274)
	lin (0.145603)
	hlv (0.139256)
	kid (0.129735)
	bla (0.124347)
	spc (0.113366)
	eje (0.0988338)