Non-Coding RNA Search

Ss1.1-Pig4-TMW8040H20.5

Sequence:


               
               GATTTTTGACCT------------------------------------------------
------------------------ACCCAACCTGGTCATGGTTCCTAGTCAGATTCGTTA
ACCACTGAGCCACGACGGGAACTCCTAGTATTTGTTTTATAGACAAGCAAACTGAGGCCT
AAGTTGGTTATTTTTTTTAAGGTCACAGAGCTATTAAATAGTGGGGCTGGGGTTCAGAAC
TAAACAAACTTTTATACGGATGATTCAAGAGCTAACAGTAATACTGATTTTAGAAATACA
AAAGTATCTGCCATAGAAATAGCTGAAAGGATTGAAAAGTCTCTCACTGGGGAGGGAGAC
CTGGTTGGGGGTGGAGGAGGTCAGAGACAAGGGAATACTATTTTTTTTTTCTTTCTGCTT
GTTTTAAGTCTGTTAACACTTCAAATTTTAAACTCTGAGCAGAAATGACTGAGATAAAAA
TAAATTCTTAAAACTGTGTTGATAATATGTTAGTATTCTACAAACTACAGTAATTCACAC
CTATGCAAATATTTAGAAGAGAGGGAAGCACTGACTTTTCCTGTTGTTTCTGTGATCTCC
AGATCTAGTTTATGGTCTATAAACATTTATTCCTACTCTACATTTTCTCGTGATGATTAT
GTAAAAGGTTGGGCTACAGTGGTCACAGGATGCCATATAAAAGTATATACGCTGAGATTA
TTGCGTCTGTATTTAGCATATTATGCAGTAAAAATTTATTGCATTAAAGTTCAAGCAGGC
ATTTTTTTCATGCTTAGACATCACTGTGTTACAAAGTTTAATTCATTAAGCTCCACATTT
CAATAGGACACTTGATGAAATGTTCAAAAGTTAGCCTATTGTATGTTTTGCATTTAAATA
TTTATATGTGGCCCTATTCAGCTCTTGCTTTATAAATCACAGAAGGGCTGGGTTATATAT
TTATATTTGTTTTTCATTCATAGGTTGTCGGCTAAAAATTATGAGTTACCTTCTGATTAC
TTGTTATTTTTTCCTTTGAAATTTTTGGCCCTCCATGTTGTGATTTCCATAAATACATAA
GGTTAACCTCAAGAAAACTTAAGGAAAATATATCCTGCATGTAACTCTGGTACATTAAAA
TACTGTAACATT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GATTTTTGACCT------------------------------------------------
------------------------ACCCAACCTGGTCATGGTTCCTAGTCAGATTCGTTA
ACCACTGAGCCACGACGGGAACTCCTAGTATTTGTTTTATAGACAAGCAAACTGAGGCCT
AAGTTGGTTATTTTTTTTAAGGTCACAGAGCTATTAAATAGTGGGGCTGGGGTTCAGAAC
TAAACAAACTTTTATACGGATGATTCAAGAGCTAACAGTAATACTGATTTTAGAAATACA
AAAGTATCTGCCATAGAAATAGCTGAAAGGATTGAAAAGTCTCTCACTGGGGAGGGAGAC
CTGGTTGGGGGTGGAGGAGGTCAGAGACAAGGGAATACTATTTTTTTTTTCTTTCTGCTT
GTTTTAAGTCTGTTAACACTTCAAATTTTAAACTCTGAGCAGAAATGACTGAGATAAAAA
TAAATTCTTAAAACTGTGTTGATAATATGTTAGTATTCTACAAACTACAGTAATTCACAC
CTATGCAAATATTTAGAAGAGAGGGAAGCACTGACTTTTCCTGTTGTTTCTGTGATCTCC
AGATCTAGTTTATGGTCTATAAACATTTATTCCTACTCTACATTTTCTCGTGATGATTAT
GTAAAAGGTTGGGCTACAGTGGTCACAGGATGCCATATAAAAGTATATACGCTGAGATTA
TTGCGTCTGTATTTAGCATATTATGCAGTAAAAATTTATTGCATTAAAGTTCAAGCAGGC
ATTTTTTTCATGCTTAGACATCACTGTGTTACAAAGTTTAATTCATTAAGCTCCACATTT
CAATAGGACACTTGATGAAATGTTCAAAAGTTAGCCTATTGTATGTTTTGCATTTAAATA
TTTATATGTGGCCCTATTCAGCTCTTGCTTTATAAATCACAGAAGGGCTGGGTTATATAT
TTATATTTGTTTTTCATTCATAGGTTGTCGGCTAAAAATTATGAGTTACCTTCTGATTAC
TTGTTATTTTTTCCTTTGAAATTTTTGGCCCTCCATGTTGTGATTTCCATAAATACATAA
GGTTAACCTCAAGAAAACTTAAGGAAAATATATCCTGCATGTAACTCTGGTACATTAAAA
TACTGTAACATT

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               73-1074, gnl|bosTau2|chr1 (21947933-21948909)
               

               
               73-1074, gnl|Hg17|chr3 (99001261-99002257)
               

               
               73-1074, gnl|Mm7|chr16 (59546699-59545409)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               73-1074, gnl|bosTau2|chr1 (21947933-21948909)
               

               
               73-1074, gnl|Hg17|chr3 (99001261-99002257)
               

               
               73-1074, gnl|Mm7|chr16 (59546699-59545409)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               fcc (0.197785)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               fcc (0.197785)

	73-1074, gnl\|bosTau2\|chr1 (21947933-21948909)
	73-1074, gnl\|Hg17\|chr3 (99001261-99002257)
	73-1074, gnl\|Mm7\|chr16 (59546699-59545409)