Ss1.1-Pig4-TMW8040H21.3
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| GCCGCTGCCGTGGTTCCTTCCCCCGCTGGTACTACGACCCCACAGAACAGATCTGCAAGA GTTTCGTTTATGGAGGTTGCTTGGGCAACAAAAACAACTACCTTCGAGAAGAAGAGTGCA AGCTCACCTGCCAAGACGTGCAAGGCCCCTCGATTGAAAGGCACCATCCAGTGTGCTCTG GTACCTGTCACCCCAGCATGTTCCGCTGCAGGGATGGCTGCTGCATCGACAGCTTCCTGG AATGTGACGACACACCCGACTGCCCCGATGCCTCCGACGAGGCCACCTGTGAAAAATATA CCAAGGGATTTGATAAACTCCAGAGGATCCACTTCCCCAGGGACAAAGGCCACTGCGTGG ATCTGCCAGACACCGGCCACTGCTTGGAGAGCATCCCTCGGTGGTACTACAACCCCTTCA CTGAACGCTGTGCCCGCTTTACCTACGGTGGATGTTATGGCAACAAGAACAACTTTGAGG AGGAGGAGCAGTGCCTGGAGTCCTGTCGTGGCATCTCCAAGAAGGATGTGTTTGGTCTAC GGCGGGAAAGCCCCATTCCCAACGCAGGCTCTGTAGAGGTGGCCATTGCCGTGCTCCTGG GCACCTGCATTGTGGTCATGGTGGCCATCCTGGGTTACTGTTTCTTCAAGAGCCAGAGAA AGAGCTTCCACAGACACCACCACCGCCACCCCCCACCCCCTACCCCGACCAGTTCCAAGG TCTCCACCACCGAGGACATGGAGCACCTGGTCTATTACCAAACAACCCGCCCCCTCTGAG CCTGGGGCTGCCTTGGCCCTCGGGCCTGGGGCTCTGGAGAGCTCTGGCCAGCTCTCACCT GGCCCTGCTTCCTTCTTGCCAAGATGGAGGTCTGGGCAAGACTTTGGGACCAGACTCCTC CCGCCTGTTTCCCAGGCCCATTCTACCTCCAAGGCCAGGCCTCCAGCCCCTCTCTGAGGT CGCTCAGCTAAGCTCAGGCCACTGGTTCCTGAGAAAGAGCAGAAAACCTTTGAGCTAGAG GTTCCACACCCAGTTGGACCTGTCTGCCTAGGATTTCAGAAGAAGTTGGAGTTTTGCTTT TGGTTCAGCGCTGCCCGCCCCCACCCCTTGACCTTGGGAAGGGGCCCAGGGCACATCCGA AGCTGGGGCCACGACCCTGTCTTCCAGAACCACCCCTCCCACTCTGCACAGTCCAGGGCT GGGGGAAGAACTTCCCTGTATAGTTTGTGTTGTACAGAGTTACTTTTTGTTTATTTAATG CCGTGGGGGTGGGCAAGAGGAGTGACAAGTGGCTCTCTGGCCCCTGCTTCCTCTTCCCCC TCCCCCGAGAGTGAACCCCAGCCCTGCCTGGCCCGGCACACAGAGCCAGAGCCTCCACCG CCCAGGGCTCTCCAGCATCACCCTCCCACCTGCTCCCCTACCTCCCACAGGCCCAGTCCA CCCACCGTGTAATAAAATGATTTGTTCTTTCAAAAA |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| GCCGCTGCCGTGGTTCCTTCCCCCGCTGGTACTACGACCCCACAGAACAGATCTGCAAGA GTTTCGTTTATGGAGGTTGCTTGGGCAACAAAAACAACTACCTTCGAGAAGAAGAGTGCA AGCTCACCTGCCAAGACGTGCAAGGCCCCTCGATTGAAAGGCACCATCCAGTGTGCTCTG GTACCTGTCACCCCAGCATGTTCCGCTGCAGGGATGGCTGCTGCATCGACAGCTTCCTGG AATGTGACGACACACCCGACTGCCCCGATGCCTCCGACGAGGCCACCTGTGAAAAATATA CCAAGGGATTTGATAAACTCCAGAGGATCCACTTCCCCAGGGACAAAGGCCACTGCGTGG ATCTGCCAGACACCGGCCACTGCTTGGAGAGCATCCCTCGGTGGTACTACAACCCCTTCA CTGAACGCTGTGCCCGCTTTACCTACGGTGGATGTTATGGCAACAAGAACAACTTTGAGG AGGAGGAGCAGTGCCTGGAGTCCTGTCGTGGCATCTCCAAGAAGGATGTGTTTGGTCTAC GGCGGGAAAGCCCCATTCCCAACGCAGGCTCTGTAGAGGTGGCCATTGCCGTGCTCCTGG GCACCTGCATTGTGGTCATGGTGGCCATCCTGGGTTACTGTTTCTTCAAGAGCCAGAGAA AGAGCTTCCACAGACACCACCACCGCCACCCCCCACCCCCTACCCCGACCAGTTCCAAGG TCTCCACCACCGAGGACATGGAGCACCTGGTCTATTACCAAACAACCCGCCCCCTCTGAG CCTGGGGCTGCCTTGGCCCTCGGGCCTGGGGCTCTGGAGAGCTCTGGCCAGCTCTCACCT GGCCCTGCTTCCTTCTTGCCAAGATGGAGGTCTGGGCAAGACTTTGGGACCAGACTCCTC CCGCCTGTTTCCCAGGCCCATTCTACCTCCAAGGCCAGGCCTCCAGCCCCTCTCTGAGGT CGCTCAGCTAAGCTCAGGCCACTGGTTCCTGAGAAAGAGCAGAAAACCTTTGAGCTAGAG GTTCCACACCCAGTTGGACCTGTCTGCCTAGGATTTCAGAAGAAGTTGGAGTTTTGCTTT TGGTTCAGCGCTGCCCGCCCCCACCCCTTGACCTTGGGAAGGGGCCCAGGGCACATCCGA AGCTGGGGCCACGACCCTGTCTTCCAGAACCACCCCTCCCACTCTGCACAGTCCAGGGCT GGGGGAAGAACTTCCCTGTATAGTTTGTGTTGTACAGAGTTACTTTTTGTTTATTTAATG CCGTGGGGGTGGGCAAGAGGAGTGACAAGTGGCTCTCTGGCCCCTGCTTCCTCTTCCCCC TCCCCCGAGAGTGAACCCCAGCCCTGCCTGGCCCGGCACACAGAGCCAGAGCCTCCACCG CCCAGGGCTCTCCAGCATCACCCTCCCACCTGCTCCCCTACCTCCCACAGGCCCAGTCCA CCCACCGTGTAATAAAATGATTTGTTCTTTCAAAAA |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
| 797-1337, - strand, RNAz p=0.997843 |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 797-1337, - strand, RNAz p=0.997843 |
| Aligned organism(s): 45 entry(ies) | More info |
| Aligned organism(s): 45 entry(ies) | Help | Less info |
| 1-145, gnl|bosTau2|chr10 (25664918-25665062) | |
| 1-145, gnl|canFam2|chr30 (10974100-10974279) | |
| 1-145, gnl|danRer3|chr25 (9929778-9929626) | |
| 1-145, gnl|dasNov1|scaffold_51406 (183-4) | |
| 1-145, gnl|echTel1|scaffold_293565 (666-822) | |
| 1-145, gnl|fr1|chrUn (59990921-59991097) | |
| 1-145, gnl|galGal2|chr5 (21527032-21527200) | |
| 1-145, gnl|hg17|chr15 (38933190-38933367) | |
| 1-145, gnl|Hg17|chr15 (38933228-38933372) | |
| 1-145, gnl|loxAfr1|scaffold_51911 (6402-6579) | |
| 1-145, gnl|mm7|chr2 (118986573-118986752) | |
| 1-145, gnl|Mm7|chr2 (118986613-118986757) | |
| 1-145, gnl|monDom2|scaffold_12 (1310151-1309972) | |
| 1-145, gnl|oryCun1|scaffold_91786 (1365-1185) | |
| 1-145, gnl|panTro1|chr16 (38853438-38853615) | |
| 1-145, gnl|rheMac2|chr7 (19244724-19244901) | |
| 1-145, gnl|rn3|chr3 (105662944-105663123) | |
| 1-145, gnl|tetNig1|chr10 (3790997-3791149) | |
| 169-297, gnl|bosTau2|chr10 (25665586-25665714) | |
| 169-297, gnl|Hg17|chr15 (38933884-38934012) | |
| 169-297, gnl|Mm7|chr2 (118987205-118987333) | |
| 347-519, gnl|bosTau2|chr10 (25666874-25667046) | |
| 347-519, gnl|canFam2|chr30 (10976369-10976511) | |
| 347-519, gnl|danRer3|chr25 (9924597-9924455) | |
| 347-519, gnl|dasNov1|scaffold_11794 (15314-15422) | |
| 347-519, gnl|echTel1|scaffold_294121 (4851-4746) | |
| 347-519, gnl|fr1|chrUn (59991965-59992107) | |
| 347-519, gnl|galGal2|chr5 (21530040-21530172) | |
| 347-519, gnl|hg17|chr15 (38935369-38935511) | |
| 347-519, gnl|Hg17|chr15 (38935380-38935552) | |
| 347-519, gnl|loxAfr1|scaffold_64364 (12570-12710) | |
| 347-519, gnl|mm7|chr2 (118988848-118988989) | |
| 347-519, gnl|Mm7|chr2 (118988858-118989030) | |
| 347-519, gnl|monDom2|scaffold_12 (1304922-1304778) | |
| 347-519, gnl|oryCun1|scaffold_123719 (704-847) | |
| 347-519, gnl|panTro1|chr16 (38855618-38855760) | |
| 347-519, gnl|rheMac2|chr7 (19246955-19247097) | |
| 347-519, gnl|rn3|chr3 (105665279-105665420) | |
| 347-519, gnl|tetNig1|chr10 (3792014-3792144) | |
| 797-1200, gnl|bosTau2|chr10 (25667942-25668366) | |
| 797-1200, gnl|Hg17|chr15 (38936458-38936861) | |
| 797-1200, gnl|Mm7|chr2 (118989804-118990195) | |
| 1201-1393, gnl|bosTau2|chr10 (25668387-25668575) | |
| 1201-1393, gnl|Hg17|chr15 (38936864-38937094) | |
| 1201-1393, gnl|Mm7|chr2 (118990228-118990407) |
| Aligned organism(s): 45 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 1-145, gnl|bosTau2|chr10 (25664918-25665062) | |
| 1-145, gnl|canFam2|chr30 (10974100-10974279) | |
| 1-145, gnl|danRer3|chr25 (9929778-9929626) | |
| 1-145, gnl|dasNov1|scaffold_51406 (183-4) | |
| 1-145, gnl|echTel1|scaffold_293565 (666-822) | |
| 1-145, gnl|fr1|chrUn (59990921-59991097) | |
| 1-145, gnl|galGal2|chr5 (21527032-21527200) | |
| 1-145, gnl|hg17|chr15 (38933190-38933367) | |
| 1-145, gnl|Hg17|chr15 (38933228-38933372) | |
| 1-145, gnl|loxAfr1|scaffold_51911 (6402-6579) | |
| 1-145, gnl|mm7|chr2 (118986573-118986752) | |
| 1-145, gnl|Mm7|chr2 (118986613-118986757) | |
| 1-145, gnl|monDom2|scaffold_12 (1310151-1309972) | |
| 1-145, gnl|oryCun1|scaffold_91786 (1365-1185) | |
| 1-145, gnl|panTro1|chr16 (38853438-38853615) | |
| 1-145, gnl|rheMac2|chr7 (19244724-19244901) | |
| 1-145, gnl|rn3|chr3 (105662944-105663123) | |
| 1-145, gnl|tetNig1|chr10 (3790997-3791149) | |
| 169-297, gnl|bosTau2|chr10 (25665586-25665714) | |
| 169-297, gnl|Hg17|chr15 (38933884-38934012) | |
| 169-297, gnl|Mm7|chr2 (118987205-118987333) | |
| 347-519, gnl|bosTau2|chr10 (25666874-25667046) | |
| 347-519, gnl|canFam2|chr30 (10976369-10976511) | |
| 347-519, gnl|danRer3|chr25 (9924597-9924455) | |
| 347-519, gnl|dasNov1|scaffold_11794 (15314-15422) | |
| 347-519, gnl|echTel1|scaffold_294121 (4851-4746) | |
| 347-519, gnl|fr1|chrUn (59991965-59992107) | |
| 347-519, gnl|galGal2|chr5 (21530040-21530172) | |
| 347-519, gnl|hg17|chr15 (38935369-38935511) | |
| 347-519, gnl|Hg17|chr15 (38935380-38935552) | |
| 347-519, gnl|loxAfr1|scaffold_64364 (12570-12710) | |
| 347-519, gnl|mm7|chr2 (118988848-118988989) | |
| 347-519, gnl|Mm7|chr2 (118988858-118989030) | |
| 347-519, gnl|monDom2|scaffold_12 (1304922-1304778) | |
| 347-519, gnl|oryCun1|scaffold_123719 (704-847) | |
| 347-519, gnl|panTro1|chr16 (38855618-38855760) | |
| 347-519, gnl|rheMac2|chr7 (19246955-19247097) | |
| 347-519, gnl|rn3|chr3 (105665279-105665420) | |
| 347-519, gnl|tetNig1|chr10 (3792014-3792144) | |
| 797-1200, gnl|bosTau2|chr10 (25667942-25668366) | |
| 797-1200, gnl|Hg17|chr15 (38936458-38936861) | |
| 797-1200, gnl|Mm7|chr2 (118989804-118990195) | |
| 1201-1393, gnl|bosTau2|chr10 (25668387-25668575) | |
| 1201-1393, gnl|Hg17|chr15 (38936864-38937094) | |
| 1201-1393, gnl|Mm7|chr2 (118990228-118990407) |
| Expressed library(ies): 14 entry(ies) | More info |
| Expressed library(ies): 14 entry(ies) | Help | Less info |
| amn (0.417711) | |
| pla (0.401016) | |
| jej (0.395687) | |
| cga (0.279096) | |
| ute (0.265569) | |
| eje (0.197668) | |
| col (0.195008) | |
| nep (0.183925) | |
| nco (0.161734) | |
| cli (0.152812) | |
| pty (0.142714) | |
| eep (0.122564) | |
| clu (0.119646) | |
| cty (0.10408) |
| Expressed library(ies): 14 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| amn (0.417711) | |
| pla (0.401016) | |
| jej (0.395687) | |
| cga (0.279096) | |
| ute (0.265569) | |
| eje (0.197668) | |
| col (0.195008) | |
| nep (0.183925) | |
| nco (0.161734) | |
| cli (0.152812) | |
| pty (0.142714) | |
| eep (0.122564) | |
| clu (0.119646) | |
| cty (0.10408) |