Ss1.1-Pig4-TMW8040I08.3
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| AAGCAAGCTTGCTGAGAATACTCAGGTGTCCTGTGAGCAGCAAACAGGTACCAGCCCGGA AAAGACGCTGAGAAGTAAACGATCAAAGTCAGGTCGGTATCGTCTTCCACTCCTGCTGCA GACTTCGCTCCAGCCCCCCATCTCGGCTCCAGCCTCACACCCAATTCCGGCTCTCAGTCT GCCAGTTTGCATCCTCCCTCCCGGTTTCTGCCTTGAGCCAGCTCCTGATCCGAGATTCCG TAGCTGGACCCTCAAACCATGGCTGGTCCCTTCTCTCGTCTGCTGTCTGCCCGCCCGGGG CTCAGGCTCCTCGCTTTGGCTGGAGCTGGGTCTCTAGCCGCTGGGTTTCTGCTCCGCCCG GAACCTATTCGAGCCGCCAGTGAACGACGGAGGCTGTATCCCCCGAGCGCTGAGTACCCA GACCTCCGAAAGCACAACAACTGCATGGCCAGTCACCTGACCCCAGCAGTCTATGCCCGG CTCTGCGACAAGACCACACCCACTGGTTGGACGCTAGATCAGTGTATCCAGACTGGCGTG GACAACCCCGGCCACCCCTTCATCAAGACTGTGGGCATGGTAGCAGGAGATGAGGAGACC TATGAGGTATTTGCTGAGCTGTTTGACCCTGTGATCCAAGAACGACATAATGGATATGAC CCCCGGACGATGAAACATACCACTGACCTAGATGCCAGCAAGATCCGTTCTGGCTTCTTT GATGAGAGGTATGTGTTGTCCTCGAGAGTCAGAACTGGCCGAAGTATCCGGGGACTTAGC CTGCCTCCAGCCTGCACTCGGGCAGAGAGACGAGAGGTGGAACGTGTTGTGGTGGATGCC CTGAGTGGCCTGAAGGGTGACCTGGCTGGACGCTACTATCGGCTCAGTGAGATGACAGAG GCTGAACAGCAGCAACTAATTGATGACCACTTCCTGTTTGATAAGCCTGTGTCCCCATTG TTGACTGCAGCAGGAATGGCTCGAGACTGGCCAGATGCTCGTGGAATCTGGCACAACAAT GAGAAGAGCTTCTTGATCTGGGTGAATGAGGAGGATCATACACGGGTCATCTCTATGGAG AAGGGTGGCAACATGAAGAAAGTGTTTGAAAGATTCTGCCGAGGCCTCAAAGAGGTGGAA CGGCTGATCCAAGAGCGTGGCTGGGAGTTCATGTGGAATGAGCGTTTGGGATACATCCTG ACCTGTCCATCTAACCTGGGCACTGGACTTCGGGCAGGAGTGCACATCAAGCTACCCCTG CTAAGCAAAGATAGCCGCTTCCCAAAGATCCTAGAGAACCTGAGACTCCAAAAGCGTGGT ACTGGAGGAGTGGACACAGCTGCCACAGGCAGCATCTTTGACATCTCTAATTTGGACCGA CTGGGCAAGTCCGAGGTGGAGCTGGTGCAGCTGGTCATCGATGGAGTAAACTACTTGATT GACTGCGAACGGCGTCTGGAGCGAGGCCAGGATATCCGCATCCCTCCACCTCTCCCCAAC AAGCATTAAATTCCATCCCCAGCAGATGACTCCCAGGACCTCTGCCATTCTAGTCATGGC CCATTCTCCTTGCCCTGGGTGTCCCTTTCCCCCTCACTCCCTCTGTCCTAGTAAAGACTC CTTGCCATGCTC |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| AAGCAAGCTTGCTGAGAATACTCAGGTGTCCTGTGAGCAGCAAACAGGTACCAGCCCGGA AAAGACGCTGAGAAGTAAACGATCAAAGTCAGGTCGGTATCGTCTTCCACTCCTGCTGCA GACTTCGCTCCAGCCCCCCATCTCGGCTCCAGCCTCACACCCAATTCCGGCTCTCAGTCT GCCAGTTTGCATCCTCCCTCCCGGTTTCTGCCTTGAGCCAGCTCCTGATCCGAGATTCCG TAGCTGGACCCTCAAACCATGGCTGGTCCCTTCTCTCGTCTGCTGTCTGCCCGCCCGGGG CTCAGGCTCCTCGCTTTGGCTGGAGCTGGGTCTCTAGCCGCTGGGTTTCTGCTCCGCCCG GAACCTATTCGAGCCGCCAGTGAACGACGGAGGCTGTATCCCCCGAGCGCTGAGTACCCA GACCTCCGAAAGCACAACAACTGCATGGCCAGTCACCTGACCCCAGCAGTCTATGCCCGG CTCTGCGACAAGACCACACCCACTGGTTGGACGCTAGATCAGTGTATCCAGACTGGCGTG GACAACCCCGGCCACCCCTTCATCAAGACTGTGGGCATGGTAGCAGGAGATGAGGAGACC TATGAGGTATTTGCTGAGCTGTTTGACCCTGTGATCCAAGAACGACATAATGGATATGAC CCCCGGACGATGAAACATACCACTGACCTAGATGCCAGCAAGATCCGTTCTGGCTTCTTT GATGAGAGGTATGTGTTGTCCTCGAGAGTCAGAACTGGCCGAAGTATCCGGGGACTTAGC CTGCCTCCAGCCTGCACTCGGGCAGAGAGACGAGAGGTGGAACGTGTTGTGGTGGATGCC CTGAGTGGCCTGAAGGGTGACCTGGCTGGACGCTACTATCGGCTCAGTGAGATGACAGAG GCTGAACAGCAGCAACTAATTGATGACCACTTCCTGTTTGATAAGCCTGTGTCCCCATTG TTGACTGCAGCAGGAATGGCTCGAGACTGGCCAGATGCTCGTGGAATCTGGCACAACAAT GAGAAGAGCTTCTTGATCTGGGTGAATGAGGAGGATCATACACGGGTCATCTCTATGGAG AAGGGTGGCAACATGAAGAAAGTGTTTGAAAGATTCTGCCGAGGCCTCAAAGAGGTGGAA CGGCTGATCCAAGAGCGTGGCTGGGAGTTCATGTGGAATGAGCGTTTGGGATACATCCTG ACCTGTCCATCTAACCTGGGCACTGGACTTCGGGCAGGAGTGCACATCAAGCTACCCCTG CTAAGCAAAGATAGCCGCTTCCCAAAGATCCTAGAGAACCTGAGACTCCAAAAGCGTGGT ACTGGAGGAGTGGACACAGCTGCCACAGGCAGCATCTTTGACATCTCTAATTTGGACCGA CTGGGCAAGTCCGAGGTGGAGCTGGTGCAGCTGGTCATCGATGGAGTAAACTACTTGATT GACTGCGAACGGCGTCTGGAGCGAGGCCAGGATATCCGCATCCCTCCACCTCTCCCCAAC AAGCATTAAATTCCATCCCCAGCAGATGACTCCCAGGACCTCTGCCATTCTAGTCATGGC CCATTCTCCTTGCCCTGGGTGTCCCTTTCCCCCTCACTCCCTCTGTCCTAGTAAAGACTC CTTGCCATGCTC |
| Coded protein: 1 entry(ies) | More info |
| Aligned organism(s): 47 entry(ies) | More info |
| Aligned organism(s): 47 entry(ies) | Help | Less info |
| 87-407, gnl|bosTau2|chr21 (34430423-34430746) | |
| 87-407, gnl|Hg17|chr15 (41673533-41673857) | |
| 87-407, gnl|Mm7|chr2 (121099529-121099850) | |
| 605-709, gnl|bosTau2|chr21 (34431778-34431882) | |
| 605-709, gnl|canFam2|chr30 (13433223-13433343) | |
| 605-709, gnl|danRer3|chrUn (42204328-42204444) | |
| 605-709, gnl|dasNov1|scaffold_8207 (11321-11438) | |
| 605-709, gnl|echTel1|scaffold_322287 (295167-295286) | |
| 605-709, gnl|fr1|chrUn (252313547-252313438) | |
| 605-709, gnl|galGal2|chr10 (20693154-20693042) | |
| 605-709, gnl|hg17|chr15 (41674847-41674971) | |
| 605-709, gnl|Hg17|chr15 (41674862-41674966) | |
| 605-709, gnl|loxAfr1|scaffold_6902 (1467-1356) | |
| 605-709, gnl|mm7|chr2 (121100776-121100896) | |
| 605-709, gnl|Mm7|chr2 (121100792-121100896) | |
| 605-709, gnl|monDom2|scaffold_53 (10400442-10400322) | |
| 605-709, gnl|oryCun1|scaffold_181039 (36868-36748) | |
| 605-709, gnl|panTro1|chr16 (41678473-41678593) | |
| 605-709, gnl|rheMac2|chr7 (22039273-22039393) | |
| 605-709, gnl|rn3|chr3 (108060277-108060397) | |
| 605-709, gnl|tetNig1|chrUn_random (25827422-25827530) | |
| 605-709, gnl|xenTro1|scaffold_358 (830136-830033) | |
| 838-1011, gnl|bosTau2|chr18 (38541253-38541426) | |
| 838-1011, gnl|Hg17|chr19 (50507019-50506846) | |
| 838-1011, gnl|Mm7|chr7 (17099092-17099265) | |
| 1133-1270, gnl|bosTau2|chr21 (34434597-34434734) | |
| 1133-1270, gnl|canFam2|chr30 (13435985-13436152) | |
| 1133-1270, gnl|danRer3|chrUn (42212025-42212186) | |
| 1133-1270, gnl|dasNov1|scaffold_5858 (70482-70360) | |
| 1133-1270, gnl|echTel1|scaffold_322287 (297481-297648) | |
| 1133-1270, gnl|fr1|chrUn (252312162-252312018) | |
| 1133-1270, gnl|galGal2|chr10 (20691474-20691310) | |
| 1133-1270, gnl|hg17|chr15 (41677667-41677834) | |
| 1133-1270, gnl|Hg17|chr15 (41677681-41677818) | |
| 1133-1270, gnl|loxAfr1|scaffold_22371 (14326-14159) | |
| 1133-1270, gnl|mm7|chr2 (121103508-121103675) | |
| 1133-1270, gnl|Mm7|chr2 (121103522-121103659) | |
| 1133-1270, gnl|monDom2|scaffold_53 (10398176-10398010) | |
| 1133-1270, gnl|oryCun1|scaffold_181039 (34093-33926) | |
| 1133-1270, gnl|panTro1|chr16 (41681304-41681471) | |
| 1133-1270, gnl|rheMac2|chr7 (22042097-22042264) | |
| 1133-1270, gnl|rn3|chr3 (108062969-108063136) | |
| 1133-1270, gnl|tetNig1|chrUn_random (25828302-25828456) | |
| 1133-1270, gnl|xenTro1|scaffold_358 (826693-826532) | |
| 1394-1631, gnl|bosTau2|chr21 (34435251-34435495) | |
| 1394-1631, gnl|Hg17|chr15 (41678645-41678893) | |
| 1394-1631, gnl|Mm7|chr2 (121104345-121104583) |
| Aligned organism(s): 47 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 87-407, gnl|bosTau2|chr21 (34430423-34430746) | |
| 87-407, gnl|Hg17|chr15 (41673533-41673857) | |
| 87-407, gnl|Mm7|chr2 (121099529-121099850) | |
| 605-709, gnl|bosTau2|chr21 (34431778-34431882) | |
| 605-709, gnl|canFam2|chr30 (13433223-13433343) | |
| 605-709, gnl|danRer3|chrUn (42204328-42204444) | |
| 605-709, gnl|dasNov1|scaffold_8207 (11321-11438) | |
| 605-709, gnl|echTel1|scaffold_322287 (295167-295286) | |
| 605-709, gnl|fr1|chrUn (252313547-252313438) | |
| 605-709, gnl|galGal2|chr10 (20693154-20693042) | |
| 605-709, gnl|hg17|chr15 (41674847-41674971) | |
| 605-709, gnl|Hg17|chr15 (41674862-41674966) | |
| 605-709, gnl|loxAfr1|scaffold_6902 (1467-1356) | |
| 605-709, gnl|mm7|chr2 (121100776-121100896) | |
| 605-709, gnl|Mm7|chr2 (121100792-121100896) | |
| 605-709, gnl|monDom2|scaffold_53 (10400442-10400322) | |
| 605-709, gnl|oryCun1|scaffold_181039 (36868-36748) | |
| 605-709, gnl|panTro1|chr16 (41678473-41678593) | |
| 605-709, gnl|rheMac2|chr7 (22039273-22039393) | |
| 605-709, gnl|rn3|chr3 (108060277-108060397) | |
| 605-709, gnl|tetNig1|chrUn_random (25827422-25827530) | |
| 605-709, gnl|xenTro1|scaffold_358 (830136-830033) | |
| 838-1011, gnl|bosTau2|chr18 (38541253-38541426) | |
| 838-1011, gnl|Hg17|chr19 (50507019-50506846) | |
| 838-1011, gnl|Mm7|chr7 (17099092-17099265) | |
| 1133-1270, gnl|bosTau2|chr21 (34434597-34434734) | |
| 1133-1270, gnl|canFam2|chr30 (13435985-13436152) | |
| 1133-1270, gnl|danRer3|chrUn (42212025-42212186) | |
| 1133-1270, gnl|dasNov1|scaffold_5858 (70482-70360) | |
| 1133-1270, gnl|echTel1|scaffold_322287 (297481-297648) | |
| 1133-1270, gnl|fr1|chrUn (252312162-252312018) | |
| 1133-1270, gnl|galGal2|chr10 (20691474-20691310) | |
| 1133-1270, gnl|hg17|chr15 (41677667-41677834) | |
| 1133-1270, gnl|Hg17|chr15 (41677681-41677818) | |
| 1133-1270, gnl|loxAfr1|scaffold_22371 (14326-14159) | |
| 1133-1270, gnl|mm7|chr2 (121103508-121103675) | |
| 1133-1270, gnl|Mm7|chr2 (121103522-121103659) | |
| 1133-1270, gnl|monDom2|scaffold_53 (10398176-10398010) | |
| 1133-1270, gnl|oryCun1|scaffold_181039 (34093-33926) | |
| 1133-1270, gnl|panTro1|chr16 (41681304-41681471) | |
| 1133-1270, gnl|rheMac2|chr7 (22042097-22042264) | |
| 1133-1270, gnl|rn3|chr3 (108062969-108063136) | |
| 1133-1270, gnl|tetNig1|chrUn_random (25828302-25828456) | |
| 1133-1270, gnl|xenTro1|scaffold_358 (826693-826532) | |
| 1394-1631, gnl|bosTau2|chr21 (34435251-34435495) | |
| 1394-1631, gnl|Hg17|chr15 (41678645-41678893) | |
| 1394-1631, gnl|Mm7|chr2 (121104345-121104583) |
| Expressed library(ies): 16 entry(ies) | More info |
| Expressed library(ies): 16 entry(ies) | Help | Less info |
| col (1.17005) | |
| duo (1.03681) | |
| ill (0.702371) | |
| nco (0.485201) | |
| ece (0.45861) | |
| fce (0.271592) | |
| jej (0.197844) | |
| cmu (0.186393) | |
| sag (0.182715) | |
| fbs (0.175346) | |
| sin (0.174948) | |
| rec (0.17307) | |
| fhi (0.169578) | |
| nje (0.16592) | |
| cje (0.165235) | |
| cst (0.140036) |
| Expressed library(ies): 16 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| col (1.17005) | |
| duo (1.03681) | |
| ill (0.702371) | |
| nco (0.485201) | |
| ece (0.45861) | |
| fce (0.271592) | |
| jej (0.197844) | |
| cmu (0.186393) | |
| sag (0.182715) | |
| fbs (0.175346) | |
| sin (0.174948) | |
| rec (0.17307) | |
| fhi (0.169578) | |
| nje (0.16592) | |
| cje (0.165235) | |
| cst (0.140036) |