Ss1.1-Pig4-TMW8040I09.3
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| GACCCACGTTACAAAGCGGTGGACAGCTCCTCGATGCGAGAAGACCTTTTCAAACAGTAC ATTGAGAAGATGGCCAAGAATTTGGACTCAGAAAAAGAGAAGGAGCTTGAAAGGCAAGCC CGCATTGAGGCAAGCCTTCGAGAACGAGAAAGAGAGGTTCAAAAGGCTCGTTCGGAACAA ACGAAAGAAATAGATCGGGAGCGAGAGCAACATAAAAGAGAAGAAGCTATCCAGAATTTC AAGGCTCTTCTGTCTGATATGGTACGTTCTTCAGATGTGTCCTGGTCTGATACCCGGAGG ACTCTTCGGAAAGATCACCGCTGGGAATCTGGATCCTTGTTGGAAAGAGAGGAGAAAGAG AAGCTTTTTAATGAACACATTGAAGCCCTTACCAAAAAGAAGAGGGAGCACTTTAGGCAA CTTCTGGATGAAACTTCTGCAATTACCTTAACATCCACGTGGAAAGAAGTGAAAAAAATC ATTAAAGAAGATCCTCGGTGCATTAAGTTCTCCTCCAGTGACAGGAAAAAGCAAAGAGAG TTTGAAGAATACATCAGAGACAAATACATCACAGCCAAAGCTGACTTCAGGACGCTCTTG AAAGAGACCAAATTTATCACCTATAGATCCAAAAAGCTAATCCAGGAATCCGATCAGCAC CTGAAGGATGTAGAGAAAATTCTGCAGAACGACAAACGGTATCTGGTACTAGACTGTGTG CCAGAGGAGAGGCGCAAGCTGATCGTGGCGTACGTGGACGACCTGGATCGCCGGGGTCCA CCCCCCCCTCCCACGGCGTCAGAGCCCACCAGACGGTCAACAAAATAATTCGTACTACTC TTCCATAGGGGTGTCTGTTAATTCAAAACGCTTGCATGAGCCAATTTTCAGGTTTTTACA TGTACGTGCATTAGTCAGACTATTGCAAAACCATCTGATGAACAGAAGGAGAAGCATTTG TGAACAGTTTCTGAACAGAGAACACTTTGGAAATATTTATGCTTTTCTTTGTGTGGCATG ACTGACATACATACTCAAATATAGGCTGTCTCTAGTAAATAAAATCTTGAAGCTAAAAAA AAAATCATCCTTTTATGAGGTGTGGAAGTCAGTGACTTGGTGGCGTTCTTTCTAGCAGTG TTACACATGCAAGGCGTGAGAGCATTTGTGGTTTGAACTTACAAAATGCAAAATACCACA GACTCCAAAAAAACCTAAGCTGGGGTTTGTTCTGTTTTGATTTAGTTTTTTAAAGCGGGT AAAAGAAAAAACACTGAAAATTGAATACTTATCTTCCAGAGGCCTAATGGACATACTTTT ACCTTCGTCTCTAAAGAACACCTTAGTTTCATTTGTTCACTTTTGTGCTTTGATTCTCCC CTTTGAGTTATAGGCCCAAGTCTTGTTGTTTAGCCTAAGAGAAGATTTATTTAGTAATGT CTTCTCGGGTGTGGAACCACGGTCATAGCTGACATGTTGGCCGGACTAGGACTGCTGGTT AAACCCATTTTATTCACCATTAAGTCATCTTTATCAATATTCTGGATTAGACAACAAATG ACCTTTCTTGGGTGTTCCCTGTAAGCTGTCCTCCTGTTTGAATGTTAAATTTTTGTTTCT AAAGTTTAATTTTAAGATGTTTGAATGTTCAGTTTATGTATTTGAATTACAATAAACCAG CCCTTTTTATATATGTGGATTGTATATGATTATTGTTATATAATTTATAAAGATTTCTTT TAAACCTGTTCTGAAACGCAATAGCAAATGTAATCTGACACCAAAAAGCTGCAATCTTGA ATATCACAGCATTTTAAAAGGCTTGGATGTAATAAA |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| GACCCACGTTACAAAGCGGTGGACAGCTCCTCGATGCGAGAAGACCTTTTCAAACAGTAC ATTGAGAAGATGGCCAAGAATTTGGACTCAGAAAAAGAGAAGGAGCTTGAAAGGCAAGCC CGCATTGAGGCAAGCCTTCGAGAACGAGAAAGAGAGGTTCAAAAGGCTCGTTCGGAACAA ACGAAAGAAATAGATCGGGAGCGAGAGCAACATAAAAGAGAAGAAGCTATCCAGAATTTC AAGGCTCTTCTGTCTGATATGGTACGTTCTTCAGATGTGTCCTGGTCTGATACCCGGAGG ACTCTTCGGAAAGATCACCGCTGGGAATCTGGATCCTTGTTGGAAAGAGAGGAGAAAGAG AAGCTTTTTAATGAACACATTGAAGCCCTTACCAAAAAGAAGAGGGAGCACTTTAGGCAA CTTCTGGATGAAACTTCTGCAATTACCTTAACATCCACGTGGAAAGAAGTGAAAAAAATC ATTAAAGAAGATCCTCGGTGCATTAAGTTCTCCTCCAGTGACAGGAAAAAGCAAAGAGAG TTTGAAGAATACATCAGAGACAAATACATCACAGCCAAAGCTGACTTCAGGACGCTCTTG AAAGAGACCAAATTTATCACCTATAGATCCAAAAAGCTAATCCAGGAATCCGATCAGCAC CTGAAGGATGTAGAGAAAATTCTGCAGAACGACAAACGGTATCTGGTACTAGACTGTGTG CCAGAGGAGAGGCGCAAGCTGATCGTGGCGTACGTGGACGACCTGGATCGCCGGGGTCCA CCCCCCCCTCCCACGGCGTCAGAGCCCACCAGACGGTCAACAAAATAATTCGTACTACTC TTCCATAGGGGTGTCTGTTAATTCAAAACGCTTGCATGAGCCAATTTTCAGGTTTTTACA TGTACGTGCATTAGTCAGACTATTGCAAAACCATCTGATGAACAGAAGGAGAAGCATTTG TGAACAGTTTCTGAACAGAGAACACTTTGGAAATATTTATGCTTTTCTTTGTGTGGCATG ACTGACATACATACTCAAATATAGGCTGTCTCTAGTAAATAAAATCTTGAAGCTAAAAAA AAAATCATCCTTTTATGAGGTGTGGAAGTCAGTGACTTGGTGGCGTTCTTTCTAGCAGTG TTACACATGCAAGGCGTGAGAGCATTTGTGGTTTGAACTTACAAAATGCAAAATACCACA GACTCCAAAAAAACCTAAGCTGGGGTTTGTTCTGTTTTGATTTAGTTTTTTAAAGCGGGT AAAAGAAAAAACACTGAAAATTGAATACTTATCTTCCAGAGGCCTAATGGACATACTTTT ACCTTCGTCTCTAAAGAACACCTTAGTTTCATTTGTTCACTTTTGTGCTTTGATTCTCCC CTTTGAGTTATAGGCCCAAGTCTTGTTGTTTAGCCTAAGAGAAGATTTATTTAGTAATGT CTTCTCGGGTGTGGAACCACGGTCATAGCTGACATGTTGGCCGGACTAGGACTGCTGGTT AAACCCATTTTATTCACCATTAAGTCATCTTTATCAATATTCTGGATTAGACAACAAATG ACCTTTCTTGGGTGTTCCCTGTAAGCTGTCCTCCTGTTTGAATGTTAAATTTTTGTTTCT AAAGTTTAATTTTAAGATGTTTGAATGTTCAGTTTATGTATTTGAATTACAATAAACCAG CCCTTTTTATATATGTGGATTGTATATGATTATTGTTATATAATTTATAAAGATTTCTTT TAAACCTGTTCTGAAACGCAATAGCAAATGTAATCTGACACCAAAAAGCTGCAATCTTGA ATATCACAGCATTTTAAAAGGCTTGGATGTAATAAA |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 2 entry(ies) | More info |
| Predicted RNA structure(s): 2 entry(ies) | Help | Less info |
| 1124-1271, - strand, RNAz p=0.851484 | |
| 1340-1458, + strand, RNAz p=0.68534 |
| Predicted RNA structure(s): 2 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 1124-1271, - strand, RNAz p=0.851484 | |
| 1340-1458, + strand, RNAz p=0.68534 |
| Homologous human UTR: 1 entry(ies) | More info |
| Homologous human UTR: 1 entry(ies) | Help | Less info |
Human gene identifier and UTR site,
human gene reading direction
human gene reading direction
| 3' of NM_006706, + |
| Aligned organism(s): 56 entry(ies) | More info |
| Aligned organism(s): 56 entry(ies) | Help | Less info |
| 248-441, gnl|bosTau2|chr7 (38598089-38598282) | |
| 248-441, gnl|canFam2|chr2 (43764741-43764600) | |
| 248-441, gnl|danRer3|chr21 (39034633-39034773) | |
| 248-441, gnl|dasNov1|scaffold_49326 (5935-6078) | |
| 248-441, gnl|fr1|chrUn (44036504-44036378) | |
| 248-441, gnl|galGal2|chr13 (16908684-16908541) | |
| 248-441, gnl|Hg17|chr5 (145866770-145866963) | |
| 248-441, gnl|hg17|chr6 (67477289-67477424) | |
| 248-441, gnl|loxAfr1|scaffold_1000 (32966-32830) | |
| 248-441, gnl|mm7|chr18 (42949108-42948965) | |
| 248-441, gnl|Mm7|chr18 (42948914-42949107) | |
| 248-441, gnl|monDom2|scaffold_6 (59814577-59814720) | |
| 248-441, gnl|oryCun1|scaffold_193707 (11782-11925) | |
| 248-441, gnl|panTro1|chr5 (68497074-68497209) | |
| 248-441, gnl|rheMac2|chr4 (85497619-85497749) | |
| 248-441, gnl|rn3|chr18 (35808689-35808546) | |
| 248-441, gnl|tetNig1|chr7 (7479085-7478959) | |
| 248-441, gnl|xenTro1|scaffold_306 (1304489-1304341) | |
| 525-626, gnl|bosTau2|chr7 (38600341-38600442) | |
| 525-626, gnl|canFam2|chr2 (43766966-43766861) | |
| 525-626, gnl|canFam2|chr2 (43766859-43766967) | |
| 525-626, gnl|danRer3|chr21 (39034055-39034156) | |
| 525-626, gnl|danRer3|chr21 (39034156-39034040) | |
| 525-626, gnl|dasNov1|scaffold_49326 (3646-3750) | |
| 525-626, gnl|dasNov1|scaffold_49326 (3752-3644) | |
| 525-626, gnl|echTel1|scaffold_320451 (54839-54938) | |
| 525-626, gnl|echTel1|scaffold_320451 (54940-54832) | |
| 525-626, gnl|fr1|chrUn (44036933-44036832) | |
| 525-626, gnl|fr1|chrUn (44036832-44036944) | |
| 525-626, gnl|galGal2|chr13 (16910299-16910200) | |
| 525-626, gnl|galGal2|chr13 (16910198-16910306) | |
| 525-626, gnl|hg17|chr5 (145868900-145869008) | |
| 525-626, gnl|Hg17|chr5 (145868900-145869001) | |
| 525-626, gnl|hg17|chr6 (67477120-67477221) | |
| 525-626, gnl|loxAfr1|scaffold_1000 (35621-35517) | |
| 525-626, gnl|loxAfr1|scaffold_1000 (35515-35623) | |
| 525-626, gnl|mm7|chr18 (42951273-42951174) | |
| 525-626, gnl|mm7|chr18 (42951172-42951280) | |
| 525-626, gnl|Mm7|chr18 (42951172-42951273) | |
| 525-626, gnl|monDom2|scaffold_6 (59813058-59813157) | |
| 525-626, gnl|monDom2|scaffold_6 (59813159-59813051) | |
| 525-626, gnl|oryCun1|scaffold_193707 (9403-9507) | |
| 525-626, gnl|oryCun1|scaffold_193707 (9509-9401) | |
| 525-626, gnl|panTro1|chr4 (152586244-152586352) | |
| 525-626, gnl|panTro1|chr5 (68496904-68497003) | |
| 525-626, gnl|rheMac2|chr4 (85497450-85497548) | |
| 525-626, gnl|rheMac2|chr6 (142965410-142965518) | |
| 525-626, gnl|rn3|chr18 (35810896-35810802) | |
| 525-626, gnl|rn3|chr18 (35810800-35810908) | |
| 525-626, gnl|tetNig1|chr7 (7479481-7479380) | |
| 525-626, gnl|tetNig1|chr7 (7479380-7479487) | |
| 525-626, gnl|xenTro1|scaffold_306 (1306940-1306841) | |
| 525-626, gnl|xenTro1|scaffold_306 (1306839-1306947) | |
| 672-1836, gnl|bosTau2|chr7 (38601515-38602699) | |
| 672-1836, gnl|Hg17|chr5 (145870102-145871412) | |
| 672-1836, gnl|Mm7|chr18 (42952528-42953666) |
| Aligned organism(s): 56 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 248-441, gnl|bosTau2|chr7 (38598089-38598282) | |
| 248-441, gnl|canFam2|chr2 (43764741-43764600) | |
| 248-441, gnl|danRer3|chr21 (39034633-39034773) | |
| 248-441, gnl|dasNov1|scaffold_49326 (5935-6078) | |
| 248-441, gnl|fr1|chrUn (44036504-44036378) | |
| 248-441, gnl|galGal2|chr13 (16908684-16908541) | |
| 248-441, gnl|Hg17|chr5 (145866770-145866963) | |
| 248-441, gnl|hg17|chr6 (67477289-67477424) | |
| 248-441, gnl|loxAfr1|scaffold_1000 (32966-32830) | |
| 248-441, gnl|mm7|chr18 (42949108-42948965) | |
| 248-441, gnl|Mm7|chr18 (42948914-42949107) | |
| 248-441, gnl|monDom2|scaffold_6 (59814577-59814720) | |
| 248-441, gnl|oryCun1|scaffold_193707 (11782-11925) | |
| 248-441, gnl|panTro1|chr5 (68497074-68497209) | |
| 248-441, gnl|rheMac2|chr4 (85497619-85497749) | |
| 248-441, gnl|rn3|chr18 (35808689-35808546) | |
| 248-441, gnl|tetNig1|chr7 (7479085-7478959) | |
| 248-441, gnl|xenTro1|scaffold_306 (1304489-1304341) | |
| 525-626, gnl|bosTau2|chr7 (38600341-38600442) | |
| 525-626, gnl|canFam2|chr2 (43766966-43766861) | |
| 525-626, gnl|canFam2|chr2 (43766859-43766967) | |
| 525-626, gnl|danRer3|chr21 (39034055-39034156) | |
| 525-626, gnl|danRer3|chr21 (39034156-39034040) | |
| 525-626, gnl|dasNov1|scaffold_49326 (3646-3750) | |
| 525-626, gnl|dasNov1|scaffold_49326 (3752-3644) | |
| 525-626, gnl|echTel1|scaffold_320451 (54839-54938) | |
| 525-626, gnl|echTel1|scaffold_320451 (54940-54832) | |
| 525-626, gnl|fr1|chrUn (44036933-44036832) | |
| 525-626, gnl|fr1|chrUn (44036832-44036944) | |
| 525-626, gnl|galGal2|chr13 (16910299-16910200) | |
| 525-626, gnl|galGal2|chr13 (16910198-16910306) | |
| 525-626, gnl|hg17|chr5 (145868900-145869008) | |
| 525-626, gnl|Hg17|chr5 (145868900-145869001) | |
| 525-626, gnl|hg17|chr6 (67477120-67477221) | |
| 525-626, gnl|loxAfr1|scaffold_1000 (35621-35517) | |
| 525-626, gnl|loxAfr1|scaffold_1000 (35515-35623) | |
| 525-626, gnl|mm7|chr18 (42951273-42951174) | |
| 525-626, gnl|mm7|chr18 (42951172-42951280) | |
| 525-626, gnl|Mm7|chr18 (42951172-42951273) | |
| 525-626, gnl|monDom2|scaffold_6 (59813058-59813157) | |
| 525-626, gnl|monDom2|scaffold_6 (59813159-59813051) | |
| 525-626, gnl|oryCun1|scaffold_193707 (9403-9507) | |
| 525-626, gnl|oryCun1|scaffold_193707 (9509-9401) | |
| 525-626, gnl|panTro1|chr4 (152586244-152586352) | |
| 525-626, gnl|panTro1|chr5 (68496904-68497003) | |
| 525-626, gnl|rheMac2|chr4 (85497450-85497548) | |
| 525-626, gnl|rheMac2|chr6 (142965410-142965518) | |
| 525-626, gnl|rn3|chr18 (35810896-35810802) | |
| 525-626, gnl|rn3|chr18 (35810800-35810908) | |
| 525-626, gnl|tetNig1|chr7 (7479481-7479380) | |
| 525-626, gnl|tetNig1|chr7 (7479380-7479487) | |
| 525-626, gnl|xenTro1|scaffold_306 (1306940-1306841) | |
| 525-626, gnl|xenTro1|scaffold_306 (1306839-1306947) | |
| 672-1836, gnl|bosTau2|chr7 (38601515-38602699) | |
| 672-1836, gnl|Hg17|chr5 (145870102-145871412) | |
| 672-1836, gnl|Mm7|chr18 (42952528-42953666) |
| Expressed library(ies): 17 entry(ies) | More info |
| Expressed library(ies): 17 entry(ies) | Help | Less info |
| cte (0.29274) | |
| cbl (0.229595) | |
| ill (0.175593) | |
| fco (0.157208) | |
| liv (0.146284) | |
| lin (0.145603) | |
| spl (0.143184) | |
| hyp (0.142837) | |
| hlv (0.139256) | |
| nca (0.136874) | |
| pla (0.133672) | |
| ova (0.129132) | |
| ret (0.128733) | |
| sug (0.127291) | |
| thg (0.126791) | |
| tra (0.123092) | |
| eru (0.120048) |
| Expressed library(ies): 17 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| cte (0.29274) | |
| cbl (0.229595) | |
| ill (0.175593) | |
| fco (0.157208) | |
| liv (0.146284) | |
| lin (0.145603) | |
| spl (0.143184) | |
| hyp (0.142837) | |
| hlv (0.139256) | |
| nca (0.136874) | |
| pla (0.133672) | |
| ova (0.129132) | |
| ret (0.128733) | |
| sug (0.127291) | |
| thg (0.126791) | |
| tra (0.123092) | |
| eru (0.120048) |