Non-Coding RNA Search

Ss1.1-Pig4-TMW8040I18.5

Sequence:


               
               CCTACCGTCAGTCTGAAAAAACTTGAAGTACATTCAAATGATCCAGATTTGTCTGTTATG
AAAGAAATCAGTATGGGTAAAGCCACAGGGCGAGGGCAGTACTGATAACTAATGTACTAT
AAATGCATTATTTACAGTTTTATTTTAACTAGGAAGCCATCAAGCATGCTAGAATTGTGA
AGTTTTTTCATTATTTTTTGTTGTTGCTGACATGAATTAACCTGGCCAAAAAAAAAAGGA
AAAAAAAAGCATGACGTTTGTCATGTAAAACTTTTTTTTTTATCCCTATGGGACTTGAGG
AACATAATCAGCGCTTCAGTTACTGTAAATAGTTGACCTAAACCTCAGATTTCTATCAAC
CAGTTGCCCTTTCCATGAACTAAACTGAATTATCTGTGTGATTGATATGTTTCACCAGGT
CACTGCTCATGTATAACAGTACTCTTTGTTTGTAGATACCTTTTTTGTATATATTTATTA
CTGTAAATCATTTGCTGCCACCAGCAGTGTGTAAGTCTAAACTATTAAATGACACATTTA
TATTTGGAATTTTAATTTTTAACTAAGTGATCAAGTTTTTAAAACTTCTTTTATTGTTTT
AAATTAAGAATTTTTTGAACCGAAGCTAGAAACTCTGCCATACATAGTTCATTGATTTTT
ACATAAAGCATCTATTTACATGATCTAAAAAAGAAATACTTTTCACAAAGTAGGCACATT
ATACCAACACCTTCTCTGCTTTGTAAATTCACCCTCCAGGATTTTGGGGGTGGTAGTCAT
GTGAAATTAAAGCAGATTCTTTAGCAATTTCCGCAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CCTACCGTCAGTCTGAAAAAACTTGAAGTACATTCAAATGATCCAGATTTGTCTGTTATG
AAAGAAATCAGTATGGGTAAAGCCACAGGGCGAGGGCAGTACTGATAACTAATGTACTAT
AAATGCATTATTTACAGTTTTATTTTAACTAGGAAGCCATCAAGCATGCTAGAATTGTGA
AGTTTTTTCATTATTTTTTGTTGTTGCTGACATGAATTAACCTGGCCAAAAAAAAAAGGA
AAAAAAAAGCATGACGTTTGTCATGTAAAACTTTTTTTTTTATCCCTATGGGACTTGAGG
AACATAATCAGCGCTTCAGTTACTGTAAATAGTTGACCTAAACCTCAGATTTCTATCAAC
CAGTTGCCCTTTCCATGAACTAAACTGAATTATCTGTGTGATTGATATGTTTCACCAGGT
CACTGCTCATGTATAACAGTACTCTTTGTTTGTAGATACCTTTTTTGTATATATTTATTA
CTGTAAATCATTTGCTGCCACCAGCAGTGTGTAAGTCTAAACTATTAAATGACACATTTA
TATTTGGAATTTTAATTTTTAACTAAGTGATCAAGTTTTTAAAACTTCTTTTATTGTTTT
AAATTAAGAATTTTTTGAACCGAAGCTAGAAACTCTGCCATACATAGTTCATTGATTTTT
ACATAAAGCATCTATTTACATGATCTAAAAAAGAAATACTTTTCACAAAGTAGGCACATT
ATACCAACACCTTCTCTGCTTTGTAAATTCACCCTCCAGGATTTTGGGGGTGGTAGTCAT
GTGAAATTAAAGCAGATTCTTTAGCAATTTCCGCAA

Predicted RNA structure(s): 2 entry(ies)

More info

Predicted RNA structure(s): 2 entry(ies)

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               395-512, - strand, RNAz p=0.681459
               

               
               670-782, - strand, RNAz p=0.905501

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               395-512, - strand, RNAz p=0.681459
               

               
               670-782, - strand, RNAz p=0.905501

Predicted microRNA(s): 1 entry(ies)

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Predicted microRNA(s): 1 entry(ies)

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               751-813, + strand, RNAmicro p=0.94611

Predicted microRNA(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted microRNA,
PigEST conread reading direction of prediction,
miRNA classificator p of RNAmicro


               
               751-813, + strand, RNAmicro p=0.94611

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               1-812, gnl|bosTau2|chr9 (34997076-34996260)
               

               
               1-812, gnl|Hg17|chr6 (88028134-88028936)
               

               
               1-812, gnl|Mm7|chr4 (34943744-34942976)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-812, gnl|bosTau2|chr9 (34997076-34996260)
               

               
               1-812, gnl|Hg17|chr6 (88028134-88028936)
               

               
               1-812, gnl|Mm7|chr4 (34943744-34942976)

Expressed library(ies): 4 entry(ies)

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Expressed library(ies): 4 entry(ies)

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               lun (0.150489)
               

               
               kid (0.129735)
               

               
               ret (0.128733)
               

               
               tra (0.123092)

Expressed library(ies): 4 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               lun (0.150489)
               

               
               kid (0.129735)
               

               
               ret (0.128733)
               

               
               tra (0.123092)

	395-512, - strand, RNAz p=0.681459
	670-782, - strand, RNAz p=0.905501

	1-812, gnl\|bosTau2\|chr9 (34997076-34996260)
	1-812, gnl\|Hg17\|chr6 (88028134-88028936)
	1-812, gnl\|Mm7\|chr4 (34943744-34942976)