Non-Coding RNA Search

Ss1.1-Pig4-TMW8040I24.3

Sequence:


               
               TCAGGTCGGCAGGCGGCCCGGCTTTTCTCCGTGCCGCATGCTGTGCAGCGGGAAGCCACC
CTGGCCTACCTGGAGAGCCAGGTTGCCGCAGCACTCACCCTGCAGTCCAGCCACGAGTAC
CGCCACTGGCTCCTCCTCTACGCCCGGTACCTCGTGAATGAAGGGTTTGAATACCGACTC
CGAGAAATATGCAAGGACTTACTGGGTCCGGTTCACTCCTCCACTGGAAGCCAGTGGGAG
TCCACAGTAGTGGGTCTGCGGAAGAGGGATCTGCTGAAGGAGCTGCTGCCTGTCATAGGG
CAGAACCTCCGCTTCCAGCGCCTCTTCACCGAGTGTCAGGAACAGCTCGACATCCTGAGA
GACAAGTAGCCTGCCCAGGCCCACCCCGGCCACAGCAAACGCAGAGCCGCCTCTCACCTC
GCTGGGCCACAGGAGGATGAAGAGATGCTAATAGGGGGTGGGCTGTCCTGCACCAGCACT
GGCCCAGCCCCCTGGGCAAACTTCCCCTGTGTCCTGGGCCTATTGCCCCTCAGGGAGGTA
GCTCTGCCCACAATTCATCCCTCCCTCCAGGACCTCAGTGCAGAGCGGGGGCCAGTGAGG
CACTCCGAGGCCGGCTGTCTCCAGCACGGCCCCAAGGTGGATAGTAGCCCCTGCCACTGG
AGGTGCTGTGCTGCTCCCACTACAACAAATGAGCCATGTGTGTGAGAGAGCCAGCCCAGA
GACGCTAGTGTACTGTGTGGTCAGCAGACTGACCTGAGACCTATGTGAAAGGAAAGGCTA
TCCAACACACGGACTATTTTTGTACTAGAATTTGCTAACTTGTAATATGGAATTTTCCTT
TTGGCCAATAATCAGGATTTCCCTATAAGTCACTTGGACATTGGTCACTTGTAGGAAATT
TAAACTCTAATTATGACAGCTACATTGAAAACAAATTGTACTGAAATTAACTTGTCTATC
TTCATTTGGTTTTAATTTTTCAATGTTTGTAAAAAGAGACTTTTGGGGGGAATAGGGCGG
AGGGCGGGTGATTTCTTTTGTAAGTGTAAAATAAATGAACACGCATTG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TCAGGTCGGCAGGCGGCCCGGCTTTTCTCCGTGCCGCATGCTGTGCAGCGGGAAGCCACC
CTGGCCTACCTGGAGAGCCAGGTTGCCGCAGCACTCACCCTGCAGTCCAGCCACGAGTAC
CGCCACTGGCTCCTCCTCTACGCCCGGTACCTCGTGAATGAAGGGTTTGAATACCGACTC
CGAGAAATATGCAAGGACTTACTGGGTCCGGTTCACTCCTCCACTGGAAGCCAGTGGGAG
TCCACAGTAGTGGGTCTGCGGAAGAGGGATCTGCTGAAGGAGCTGCTGCCTGTCATAGGG
CAGAACCTCCGCTTCCAGCGCCTCTTCACCGAGTGTCAGGAACAGCTCGACATCCTGAGA
GACAAGTAGCCTGCCCAGGCCCACCCCGGCCACAGCAAACGCAGAGCCGCCTCTCACCTC
GCTGGGCCACAGGAGGATGAAGAGATGCTAATAGGGGGTGGGCTGTCCTGCACCAGCACT
GGCCCAGCCCCCTGGGCAAACTTCCCCTGTGTCCTGGGCCTATTGCCCCTCAGGGAGGTA
GCTCTGCCCACAATTCATCCCTCCCTCCAGGACCTCAGTGCAGAGCGGGGGCCAGTGAGG
CACTCCGAGGCCGGCTGTCTCCAGCACGGCCCCAAGGTGGATAGTAGCCCCTGCCACTGG
AGGTGCTGTGCTGCTCCCACTACAACAAATGAGCCATGTGTGTGAGAGAGCCAGCCCAGA
GACGCTAGTGTACTGTGTGGTCAGCAGACTGACCTGAGACCTATGTGAAAGGAAAGGCTA
TCCAACACACGGACTATTTTTGTACTAGAATTTGCTAACTTGTAATATGGAATTTTCCTT
TTGGCCAATAATCAGGATTTCCCTATAAGTCACTTGGACATTGGTCACTTGTAGGAAATT
TAAACTCTAATTATGACAGCTACATTGAAAACAAATTGTACTGAAATTAACTTGTCTATC
TTCATTTGGTTTTAATTTTTCAATGTTTGTAAAAAGAGACTTTTGGGGGGAATAGGGCGG
AGGGCGGGTGATTTCTTTTGTAAGTGTAAAATAAATGAACACGCATTG

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               579-698, - strand, RNAz p=0.866171

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               579-698, - strand, RNAz p=0.866171

Predicted microRNA(s): 1 entry(ies)

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Predicted microRNA(s): 1 entry(ies)

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               585-657, - strand, RNAmicro p=0.994663

Predicted microRNA(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted microRNA,
PigEST conread reading direction of prediction,
miRNA classificator p of RNAmicro


               
               585-657, - strand, RNAmicro p=0.994663

Aligned organism(s): 6 entry(ies)

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Aligned organism(s): 6 entry(ies)

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               1-164, gnl|bosTau2|chr17 (43817573-43817410)
               

               
               1-164, gnl|Hg17|chr22 (17715595-17715432)
               

               
               1-164, gnl|Mm7|chr16_random (3085619-3085456)
               


               
               579-1068, gnl|bosTau2|chr17 (43813994-43813520)
               

               
               579-1068, gnl|Hg17|chr22 (17693263-17692784)
               

               
               579-1068, gnl|Mm7|chr16_random (3070413-3069930)

Aligned organism(s): 6 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-164, gnl|bosTau2|chr17 (43817573-43817410)
               

               
               1-164, gnl|Hg17|chr22 (17715595-17715432)
               

               
               1-164, gnl|Mm7|chr16_random (3085619-3085456)
               


               
               579-1068, gnl|bosTau2|chr17 (43813994-43813520)
               

               
               579-1068, gnl|Hg17|chr22 (17693263-17692784)
               

               
               579-1068, gnl|Mm7|chr16_random (3070413-3069930)

Expressed library(ies): 7 entry(ies)

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Expressed library(ies): 7 entry(ies)

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               cmu (0.186393)
               

               
               fbs (0.175346)
               

               
               nje (0.16592)
               

               
               nco (0.161734)
               

               
               ste (0.135208)
               

               
               thg (0.126791)
               

               
               spc (0.113366)

Expressed library(ies): 7 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               cmu (0.186393)
               

               
               fbs (0.175346)
               

               
               nje (0.16592)
               

               
               nco (0.161734)
               

               
               ste (0.135208)
               

               
               thg (0.126791)
               

               
               spc (0.113366)

	1-164, gnl\|bosTau2\|chr17 (43817573-43817410)
	1-164, gnl\|Hg17\|chr22 (17715595-17715432)
	1-164, gnl\|Mm7\|chr16_random (3085619-3085456)

	579-1068, gnl\|bosTau2\|chr17 (43813994-43813520)
	579-1068, gnl\|Hg17\|chr22 (17693263-17692784)
	579-1068, gnl\|Mm7\|chr16_random (3070413-3069930)

	cmu (0.186393)
	fbs (0.175346)
	nje (0.16592)
	nco (0.161734)
	ste (0.135208)
	thg (0.126791)
	spc (0.113366)