Non-Coding RNA Search

Ss1.1-Pig4-TMW8040J10.3

Sequence:


               
               CGCCCCCGCGCTACGCCACGCTGGAGCACCCGTTCCACTGCCCGCGCGTCCTTAAGGTGC
CGTCCTATCTCAGCTACAAGTTCCTGGGCGAGCGCGACTGCGCGGCGCCTTGCGAACCCG
CGCGGCCCGACGGCTCCATGTTCTTCTCTCAGGAGGAAACGCGTTTTGCGCGCCTCTGGA
TTCTCACCTGGTCAGTGTTGTGCTGCGCCTCCACCTTCTTCACCGTCACTACGTACCTGG
TGGACATGCAGCGCTTCCGCTACCCGGAGCGGCCCATCATCTTTCTGTCCGGCTGCTACA
CTATGGTGTCGGTGGCCTACATCGCGGGCTTCGTGCTCCAGGAGCGCGTGGTGTGTAACG
AGCGCTTCTCCGAGGACGGCTACCGCACAGTGGTACAGGGGACCAAGAAGGAGGGCTGCA
CCATCCTCTTCATGATGCTCTACTTCTTCAGCATGGCCAGTTCCATCTGGTGGGTCATCC
TGTCGCTCACCTGGTTCCTGGCGGCGGGCATGAAATGGGGCCACGAGGCCATTGAAGCCA
ACTCGCAGTACTTCCACTTGGCCGCGTGGGCCGTGCCCGCCGTCAAAACCATCACAATCC
TGGCCATGGGCCAGATTGACGGCGACCTGCTGAGCGGCGTGTGCTTCGTGGGCCTCAACA
GCCTGGACCCGCTGCGGGGCTTCGTGCTGGCGCCGCTCTTCGTGTACCTGTTCATAGGCA
CGTCCTTCCTCCTGGCCGGTTTCGTGTCCCTCTTCCGCATCCGTACCATCATGAAGCACG
ATGGCACCAAGACCGAGAAGCTGGAGAGGCTCATGGTGCGCATCGGCGTCTTCTCGGTGC
TCTACACGGTGCCCGCCACCATCGTCATCGCCTGCTACTTCTACGAGCAGGCCTTCCGAG
AGCACTGGGAGCGCTCGTGGGTGAGCCAGCACTGCAAGAGCCTGGCCATCCCGTGCCCGG
CGCACTACACTCCGCGCATGTCGCCCGACTTCACGGTCTACATGATCAAATACCTCATGA
CGCTCATCGTGGGCATCACGTCGGGCTTCTGGATCTGGTCCGGCAAGACGCTGCACTCGT
GGAGGAAGTTCTACACCCGTCTCACCAACAGCCGGCACGGCGAGACCACCGTGTGAGCCT
GCGCTCCTGCGCTGCGTCCCCGGCCCCGGGCCCGCACCGCGCGCTCTGCCCGCGGGGGTG
GGGGTGGGGGCTCCTACAGACTCCTTATTTTATTTTTTTAATAAAGAACAATCGAAACCA
AAAAAAAAAAAAAAAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CGCCCCCGCGCTACGCCACGCTGGAGCACCCGTTCCACTGCCCGCGCGTCCTTAAGGTGC
CGTCCTATCTCAGCTACAAGTTCCTGGGCGAGCGCGACTGCGCGGCGCCTTGCGAACCCG
CGCGGCCCGACGGCTCCATGTTCTTCTCTCAGGAGGAAACGCGTTTTGCGCGCCTCTGGA
TTCTCACCTGGTCAGTGTTGTGCTGCGCCTCCACCTTCTTCACCGTCACTACGTACCTGG
TGGACATGCAGCGCTTCCGCTACCCGGAGCGGCCCATCATCTTTCTGTCCGGCTGCTACA
CTATGGTGTCGGTGGCCTACATCGCGGGCTTCGTGCTCCAGGAGCGCGTGGTGTGTAACG
AGCGCTTCTCCGAGGACGGCTACCGCACAGTGGTACAGGGGACCAAGAAGGAGGGCTGCA
CCATCCTCTTCATGATGCTCTACTTCTTCAGCATGGCCAGTTCCATCTGGTGGGTCATCC
TGTCGCTCACCTGGTTCCTGGCGGCGGGCATGAAATGGGGCCACGAGGCCATTGAAGCCA
ACTCGCAGTACTTCCACTTGGCCGCGTGGGCCGTGCCCGCCGTCAAAACCATCACAATCC
TGGCCATGGGCCAGATTGACGGCGACCTGCTGAGCGGCGTGTGCTTCGTGGGCCTCAACA
GCCTGGACCCGCTGCGGGGCTTCGTGCTGGCGCCGCTCTTCGTGTACCTGTTCATAGGCA
CGTCCTTCCTCCTGGCCGGTTTCGTGTCCCTCTTCCGCATCCGTACCATCATGAAGCACG
ATGGCACCAAGACCGAGAAGCTGGAGAGGCTCATGGTGCGCATCGGCGTCTTCTCGGTGC
TCTACACGGTGCCCGCCACCATCGTCATCGCCTGCTACTTCTACGAGCAGGCCTTCCGAG
AGCACTGGGAGCGCTCGTGGGTGAGCCAGCACTGCAAGAGCCTGGCCATCCCGTGCCCGG
CGCACTACACTCCGCGCATGTCGCCCGACTTCACGGTCTACATGATCAAATACCTCATGA
CGCTCATCGTGGGCATCACGTCGGGCTTCTGGATCTGGTCCGGCAAGACGCTGCACTCGT
GGAGGAAGTTCTACACCCGTCTCACCAACAGCCGGCACGGCGAGACCACCGTGTGAGCCT
GCGCTCCTGCGCTGCGTCCCCGGCCCCGGGCCCGCACCGCGCGCTCTGCCCGCGGGGGTG
GGGGTGGGGGCTCCTACAGACTCCTTATTTTATTTTTTTAATAAAGAACAATCGAAACCA
AAAAAAAAAAAAAAAAAAAAAAAA

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|8248136|gb|AAF74057.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|8248136|gb|AAF74057.1|

Predicted RNA structure(s): 2 entry(ies)

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Predicted RNA structure(s): 2 entry(ies)

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               160-399, - strand, RNAz p=0.998535
               

               
               480-599, - strand, RNAz p=0.896853

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               160-399, - strand, RNAz p=0.998535
               

               
               480-599, - strand, RNAz p=0.896853

Aligned organism(s): 9 entry(ies)

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Aligned organism(s): 9 entry(ies)

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               1-1260, gnl|bosTau2|chr19 (37705621-37704356)
               

               
               1-1260, gnl|Hg17|chr17 (39991145-39992383)
               

               
               1-1260, gnl|Mm7|chr11 (102714350-102715626)
               


               
               201-360, gnl|bosTau2|chr13 (15027173-15027011)
               

               
               201-360, gnl|Hg17|chr10 (35969502-35969340)
               

               
               201-360, gnl|Mm7|chr18 (9417526-9417688)
               


               
               417-1170, gnl|bosTau2|chr13 (15026849-15026109)
               

               
               417-1170, gnl|Hg17|chr10 (35969178-35968438)
               

               
               417-1170, gnl|Mm7|chr18 (9417853-9418590)

Aligned organism(s): 9 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-1260, gnl|bosTau2|chr19 (37705621-37704356)
               

               
               1-1260, gnl|Hg17|chr17 (39991145-39992383)
               

               
               1-1260, gnl|Mm7|chr11 (102714350-102715626)
               


               
               201-360, gnl|bosTau2|chr13 (15027173-15027011)
               

               
               201-360, gnl|Hg17|chr10 (35969502-35969340)
               

               
               201-360, gnl|Mm7|chr18 (9417526-9417688)
               


               
               417-1170, gnl|bosTau2|chr13 (15026849-15026109)
               

               
               417-1170, gnl|Hg17|chr10 (35969178-35968438)
               

               
               417-1170, gnl|Mm7|chr18 (9417853-9418590)

Expressed library(ies): 5 entry(ies)

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Expressed library(ies): 5 entry(ies)

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               eru (0.240096)
               

               
               fbs (0.175346)
               

               
               cov (0.132153)
               

               
               eep (0.122564)
               

               
               eje (0.0988338)

Expressed library(ies): 5 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               eru (0.240096)
               

               
               fbs (0.175346)
               

               
               cov (0.132153)
               

               
               eep (0.122564)
               

               
               eje (0.0988338)

	160-399, - strand, RNAz p=0.998535
	480-599, - strand, RNAz p=0.896853

	1-1260, gnl\|bosTau2\|chr19 (37705621-37704356)
	1-1260, gnl\|Hg17\|chr17 (39991145-39992383)
	1-1260, gnl\|Mm7\|chr11 (102714350-102715626)

	201-360, gnl\|bosTau2\|chr13 (15027173-15027011)
	201-360, gnl\|Hg17\|chr10 (35969502-35969340)
	201-360, gnl\|Mm7\|chr18 (9417526-9417688)

	417-1170, gnl\|bosTau2\|chr13 (15026849-15026109)
	417-1170, gnl\|Hg17\|chr10 (35969178-35968438)
	417-1170, gnl\|Mm7\|chr18 (9417853-9418590)

	eru (0.240096)
	fbs (0.175346)
	cov (0.132153)
	eep (0.122564)
	eje (0.0988338)