Ss1.1-Pig4-TMW8040J12.3.5
|
AGATTCAGAGAAGAATCTTATGGCTCCCTCTTTTGGGATTAGGATGGGAAGAGAACATAA
TTTTTTTGTATATGAAAAAAAGTTCTCTTATAGGACTACCTTGCTGGTATGCCTTCCTGC
TGTGTCTTACTTCCTGAGGAGTTATATCCGCCCACCTCAACTTGGATACTGCCTAGTAGG
ACCTAAACAGAAAAGCAGTAAAGGCTAACTGACACAGGGATGGAGCAGATTCCGATCCAT
TTTCTCTAATCCTTGCTGTGCATGTATCCTTCTTTATCCCAGAAGGGTCTGTTTGGACTG
TATGGACTGATTTGGGTTACATACTCTAGAGGGATAGGGGAATCATAATAATAGGGCCCC
AAGACTATTACTACATTCTCCCACTAGAGTTGTCCTGCCCAGGGTCAGGGCCAAGCTAGA
GATTGTTCTTCAATCCAAGACTTGTAATAACTAAAAAGTCAAACTTTGGCAAGAGCTAAA
ATAATTTGGAGTTATCTGCCCTTGACTTTTTTTTATAGACATCTCCTTCTAAGGGGATGC
AGAGGGAAAGGAGGGTCTAAGTGAGACTCTGGCCTTCTTACAAGTGAGATTTGGGAAACA
GGCTGAAGGTAAGGCCATTGTCTCCTCTTCAGAGAGGGAGCTCATATTGTGACATTGCTG
TTTCCTTTCTGACCTTTTCTCCTAGTTAGAGGAGGCAGAAGTGGAAAGAGTTTTGTGTAA
TGGTTGCTTCATTTTACCTCTCTCTTGGTTTGTGTTTTTGTATTTTGCCCTCCATTCTTA
GCAGTAGCCTCCTGTCCTGGATGGATATGAGGTGGACTAGGTCCAGCAGGTGCCCTTGGG
GACAAACTAACTGCTTTCTTTTAGGGGGAGAGAATGCTCCCTACCATATAGTTGACAGTG
GTTAGGAACTCTCCCTTTCCCTACTTATCTTCTAACAGCAGAATTCCCGTCCTTCTCTTC
TCAATTAAGTGTATTGATCACCCTGTAATTCTATTATGTATCTGAGTGTGTGTGTGTGTA
AGGGGTGGGGGTGGGGGAAGGGGTTCTTTACAAATTTCTGTGGTTTGTGGCTTTTCCTTC
CATACATTAGTTCCCACCAAACCGCATGCCCAGGGGCCATTGCCTGGCATTATCGCATGC
TGGGGTCATTCGGGAAGTGTAGTGAAGCTCACCACTGTCCTTTGTTTGGAGAGTCTTATT
TTTGCATAAGTAGTTCATCCTATACAGATTGCTAACTAACTGTGTACTCCTCTTGCCCCT
ATGGCTGCTGGTGTAAATAAACTGCATCTCCCCATTGGTAAACAATAATAATAAACAAAA
TTTTAAAAAACGAAAAAAAAAAAA
|
Blue-coloured subsequences are predicted RNA structures by RNAz
|
AGATTCAGAGAAGAATCTTATGGCTCCCTCTTTTGGGATTAGGATGGGAAGAGAACATAA
TTTTTTTGTATATGAAAAAAAGTTCTCTTATAGGACTACCTTGCTGGTATGCCTTCCTGC
TGTGTCTTACTTCCTGAGGAGTTATATCCGCCCACCTCAACTTGGATACTGCCTAGTAGG
ACCTAAACAGAAAAGCAGTAAAGGCTAACTGACACAGGGATGGAGCAGATTCCGATCCAT
TTTCTCTAATCCTTGCTGTGCATGTATCCTTCTTTATCCCAGAAGGGTCTGTTTGGACTG
TATGGACTGATTTGGGTTACATACTCTAGAGGGATAGGGGAATCATAATAATAGGGCCCC
AAGACTATTACTACATTCTCCCACTAGAGTTGTCCTGCCCAGGGTCAGGGCCAAGCTAGA
GATTGTTCTTCAATCCAAGACTTGTAATAACTAAAAAGTCAAACTTTGGCAAGAGCTAAA
ATAATTTGGAGTTATCTGCCCTTGACTTTTTTTTATAGACATCTCCTTCTAAGGGGATGC
AGAGGGAAAGGAGGGTCTAAGTGAGACTCTGGCCTTCTTACAAGTGAGATTTGGGAAACA
GGCTGAAGGTAAGGCCATTGTCTCCTCTTCAGAGAGGGAGCTCATATTGTGACATTGCTG
TTTCCTTTCTGACCTTTTCTCCTAGTTAGAGGAGGCAGAAGTGGAAAGAGTTTTGTGTAA
TGGTTGCTTCATTTTACCTCTCTCTTGGTTTGTGTTTTTGTATTTTGCCCTCCATTCTTA
GCAGTAGCCTCCTGTCCTGGATGGATATGAGGTGGACTAGGTCCAGCAGGTGCCCTTGGG
GACAAACTAACTGCTTTCTTTTAGGGGGAGAGAATGCTCCCTACCATATAGTTGACAGTG
GTTAGGAACTCTCCCTTTCCCTACTTATCTTCTAACAGCAGAATTCCCGTCCTTCTCTTC
TCAATTAAGTGTATTGATCACCCTGTAATTCTATTATGTATCTGAGTGTGTGTGTGTGTA
AGGGGTGGGGGTGGGGGAAGGGGTTCTTTACAAATTTCTGTGGTTTGTGGCTTTTCCTTC
CATACATTAGTTCCCACCAAACCGCATGCCCAGGGGCCATTGCCTGGCATTATCGCATGC
TGGGGTCATTCGGGAAGTGTAGTGAAGCTCACCACTGTCCTTTGTTTGGAGAGTCTTATT
TTTGCATAAGTAGTTCATCCTATACAGATTGCTAACTAACTGTGTACTCCTCTTGCCCCT
ATGGCTGCTGGTGTAAATAAACTGCATCTCCCCATTGGTAAACAATAATAATAAACAAAA
TTTTAAAAAACGAAAAAAAAAAAA
|
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
|
1042-1135, + strand, RNAmicro p=0.943951 |
PigEST conread start position and end position of the predicted microRNA,
PigEST conread reading direction of prediction,
miRNA classificator p of RNAmicro
|
1042-1135, + strand, RNAmicro p=0.943951 |
Human gene identifier and UTR site,
human gene reading direction
|
16-1329, gnl|bosTau2|chr25 (29771690-29773004) |
|
16-1329, gnl|Hg17|chr12 (73220178-73221496) |
|
16-1329, gnl|Mm7|chr10 (112433023-112431721) |
| |
|
1031-1300, gnl|bosTau2|chr19 (38103479-38103750) |
|
1031-1300, gnl|canFam2|chr9 (22524195-22523938) |
|
1031-1300, gnl|dasNov1|scaffold_69929 (2838-3088) |
|
1031-1300, gnl|echTel1|scaffold_184347 (3942-4230) |
|
1031-1300, gnl|Hg17|chr17 (39624970-39624699) |
|
1031-1300, gnl|hg17|chrX (65055943-65056210) |
|
1031-1300, gnl|loxAfr1|scaffold_24462 (26332-26587) |
|
1031-1300, gnl|mm7|chr11 (102398340-102398598) |
|
1031-1300, gnl|Mm7|chr11 (102398611-102398339) |
|
1031-1300, gnl|monDom2|scaffold_18 (42617101-42616847) |
|
1031-1300, gnl|oryCun1|scaffold_175495 (55795-56054) |
|
1031-1300, gnl|panTro1|chrX (66842600-66842862) |
|
1031-1300, gnl|rheMac2|chrX (64598802-64599064) |
|
1031-1300, gnl|rn3|chr10 (91383312-91383570) |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
|
16-1329, gnl|bosTau2|chr25 (29771690-29773004) |
|
16-1329, gnl|Hg17|chr12 (73220178-73221496) |
|
16-1329, gnl|Mm7|chr10 (112433023-112431721) |
| |
|
1031-1300, gnl|bosTau2|chr19 (38103479-38103750) |
|
1031-1300, gnl|canFam2|chr9 (22524195-22523938) |
|
1031-1300, gnl|dasNov1|scaffold_69929 (2838-3088) |
|
1031-1300, gnl|echTel1|scaffold_184347 (3942-4230) |
|
1031-1300, gnl|Hg17|chr17 (39624970-39624699) |
|
1031-1300, gnl|hg17|chrX (65055943-65056210) |
|
1031-1300, gnl|loxAfr1|scaffold_24462 (26332-26587) |
|
1031-1300, gnl|mm7|chr11 (102398340-102398598) |
|
1031-1300, gnl|Mm7|chr11 (102398611-102398339) |
|
1031-1300, gnl|monDom2|scaffold_18 (42617101-42616847) |
|
1031-1300, gnl|oryCun1|scaffold_175495 (55795-56054) |
|
1031-1300, gnl|panTro1|chrX (66842600-66842862) |
|
1031-1300, gnl|rheMac2|chrX (64598802-64599064) |
|
1031-1300, gnl|rn3|chr10 (91383312-91383570) |
|
fce (0.814775) |
|
amn (0.417711) |
|
fcc (0.39557) |
|
fbs (0.350693) |
|
fhi (0.339155) |
|
nca (0.273748) |
|
nmm (0.265604) |
|
ebs (0.236602) |
|
pan (0.23596) |
|
gul (0.177588) |
|
mcp (0.170648) |
|
eye (0.170503) |
|
eli (0.151814) |
|
lnt (0.142308) |
|
che (0.136314) |
|
ssp (0.13552) |
|
pgl (0.118483) |
|
jca (0.11396) |
|
spc (0.113366) |
|
cty (0.10408) |
|
nbm (0.0993246) |
|
ldo (0.0970026) |
|
fce (0.814775) |
|
amn (0.417711) |
|
fcc (0.39557) |
|
fbs (0.350693) |
|
fhi (0.339155) |
|
nca (0.273748) |
|
nmm (0.265604) |
|
ebs (0.236602) |
|
pan (0.23596) |
|
gul (0.177588) |
|
mcp (0.170648) |
|
eye (0.170503) |
|
eli (0.151814) |
|
lnt (0.142308) |
|
che (0.136314) |
|
ssp (0.13552) |
|
pgl (0.118483) |
|
jca (0.11396) |
|
spc (0.113366) |
|
cty (0.10408) |
|
nbm (0.0993246) |
|
ldo (0.0970026) |
