Non-Coding RNA Search

Ss1.1-Pig4-TMW8040J19.3

Sequence:


               
               GGACTTCCAGGAGACAGCTCAAGGCCCCCTGCTCAGCCAGCAGGATCCAGCAGCCCCTGC
TGTTGGCCCAGTCTCCCCAGCTGAGGGGGCATCCTCGCAGGAGCCTGGGTCCCAGCCAGA
CCTGGCGTTGGCCAGAAGCCTTCCTCCTGCTGAGGAGCTGCCCATGGAGCTCCCTAAGAA
AGCTGGGGCTGGGGAGGCCTGGGGAGTCAGTGTTTCAAGTCCCTCACCCAAAGAGGTTGA
CCTCCCTAGTGTTAGGGGCTCCCCAGGCCCCCTGCCCTCAGATCTTCCTGCCTCTGAGAC
TCCTGATGGGCAGCCCAAGCCAGAAGTAGCAGCAATGAACGGAGCAGAACCCATCTCCCC
CCAGCGGGTGAGAGGAGCAGTGGAGACCCCAGGCACTCCCAAGTCCCTCATCCCTGGCCC
CTCGGACCCTGGCCCAACTACAAACCGAACAGAGAGCCCTGTGGGAGCCCTGCAGCCAGG
TCATAAAACACAGAGATGCCTGTGTTCCAGCCTCAACCAGGAAGACAACACCCAAGGGGA
AGACTGCACAGTAAGAGAGAAGGAATCTGAGTCCTCAATGACCAGGACAGGCAGAGCTTG
CCTGCCAGCCTGGACCACTGGCTTTGAGACTGTGACAGGAAATGAAAATAAACCTCTATA
TTCTGCAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GGACTTCCAGGAGACAGCTCAAGGCCCCCTGCTCAGCCAGCAGGATCCAGCAGCCCCTGC
TGTTGGCCCAGTCTCCCCAGCTGAGGGGGCATCCTCGCAGGAGCCTGGGTCCCAGCCAGA
CCTGGCGTTGGCCAGAAGCCTTCCTCCTGCTGAGGAGCTGCCCATGGAGCTCCCTAAGAA
AGCTGGGGCTGGGGAGGCCTGGGGAGTCAGTGTTTCAAGTCCCTCACCCAAAGAGGTTGA
CCTCCCTAGTGTTAGGGGCTCCCCAGGCCCCCTGCCCTCAGATCTTCCTGCCTCTGAGAC
TCCTGATGGGCAGCCCAAGCCAGAAGTAGCAGCAATGAACGGAGCAGAACCCATCTCCCC
CCAGCGGGTGAGAGGAGCAGTGGAGACCCCAGGCACTCCCAAGTCCCTCATCCCTGGCCC
CTCGGACCCTGGCCCAACTACAAACCGAACAGAGAGCCCTGTGGGAGCCCTGCAGCCAGG
TCATAAAACACAGAGATGCCTGTGTTCCAGCCTCAACCAGGAAGACAACACCCAAGGGGA
AGACTGCACAGTAAGAGAGAAGGAATCTGAGTCCTCAATGACCAGGACAGGCAGAGCTTG
CCTGCCAGCCTGGACCACTGGCTTTGAGACTGTGACAGGAAATGAAAATAAACCTCTATA
TTCTGCAAAAAA

Predicted RNA structure(s): 1 entry(ies)

More info

Predicted RNA structure(s): 1 entry(ies)

Help | Less info


               
               41-280, - strand, RNAz p=0.999833

Predicted RNA structure(s): 1 entry(ies)

Help | Less info

PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               41-280, - strand, RNAz p=0.999833

Predicted microRNA(s): 1 entry(ies)

More info

Predicted microRNA(s): 1 entry(ies)

Help | Less info


               
               177-278, + strand, RNAmicro p=0.999972

Predicted microRNA(s): 1 entry(ies)

Help | Less info

PigEST conread start position and end position of the predicted microRNA,
PigEST conread reading direction of prediction,
miRNA classificator p of RNAmicro


               
               177-278, + strand, RNAmicro p=0.999972

Aligned organism(s): 3 entry(ies)

More info

Aligned organism(s): 3 entry(ies)

Help | Less info


               
               1-323, gnl|bosTau2|chr22 (12046122-12045800)
               

               
               1-323, gnl|Hg17|chr3 (9966107-9965785)
               

               
               1-323, gnl|Mm7|chr6 (113658520-113658201)

Aligned organism(s): 3 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-323, gnl|bosTau2|chr22 (12046122-12045800)
               

               
               1-323, gnl|Hg17|chr3 (9966107-9965785)
               

               
               1-323, gnl|Mm7|chr6 (113658520-113658201)

Expressed library(ies): 1 entry(ies)

More info

Expressed library(ies): 1 entry(ies)

Help | Less info


               
               fce (0.271592)

Expressed library(ies): 1 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               fce (0.271592)

	1-323, gnl\|bosTau2\|chr22 (12046122-12045800)
	1-323, gnl\|Hg17\|chr3 (9966107-9965785)
	1-323, gnl\|Mm7\|chr6 (113658520-113658201)