Ss1.1-Pig4-TMW8040J22.3.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| TTGGCCGGGGCTTGAGGTATATTCATTCAATGTCTTTGGTTCACATGGATATAAAGCCTA GTAATATTTTCATATCTCGAACTTCAATCCCAAATGCTGCCTCTGAAGAAGGAGATGAAG ATGACTGGGCATCCAACAAAGTTATGTTTAAAATAGGTGACCTTGGGCATGTAACAAGAA TCTCTAGTCCACAAGTTGAAGAGGGTGATAGCCGTTTTCTTGCAAATGAAGTTTTGCAGG AGAACTATACTCATCTACCAAAAGCGGATATTTTTGCCCTTGCCCTCACAGTGGTATGTG CTGCTGGTGCTGAGCCTCTTCCCAGAAATGGAGACCAATGGCATGAAATCAGGCAGGGGA GATTACCTCGGATTCCACAAGTGCTTTCTCAAGAATTTACAGAGTTGCTAAAAGTTATGA TTCATCCAGATCCAGAGAGAAGACCTTCAGCAATGGCACTGGTAAAGCATTCAGTATTGC TATCTGCTTCTAGGAAGAGTGCAGAACAATTACGAATAGAATTGAATGCTGAAAAGTTCA AAAACTCACTTTTGCAGAAAGAACTCAAGAAAGCCCAGATGGCAAAAGCTGCAGCTGAGG AAAGGGCACTCTTCACTGACCGGATGGCCACCAGGTCCACCACCCAGAGTAATAGAACAT CTCGACTTATTGGAAAGAAAATGAACCGCTCTGTCAGCCTTACCATATACTGAACTACTC ATTTCCCACCTCCCCCAGAAACTGTGACAAGAGGAAGCTAGGTTGAAATCACTGCTAAAA TCCAGTTTGCAAATTACTTTCTCAATCGGTGTCAGTAGTTTTACTGAGAAACCTTTTAGG ACTTGTACTTGTGAGTTACAGTTGAAAACTGTATTTTGACCAGTGCTGTATCAGGCTTTC ATCTAGTCTTACCAGTCTGTCTTCTGTAGGATGTCAGTCACTGTCGGATGTTACACCAGC CTTTCCAGGGTTTAACCACTGTGGTGGTGTGCTGCTTATAGTTCGCTATTGCATTGTAGT AAAAGGTATCTTTCCCTGTAGTGACCTGTAAAAAGGATGCAAGGGCTTTGTTACAAACAT ATTTTCCCTTTGAAAAGGGAAGTGTAAGAGACTCAGTACTCCTCAGCCTTCAATGTACCT GTGTGTCAATCTTATATTTCTTTTTTTTAATTGTGAATTATACTTGTATATCCAACTGGG AGCACTTTTTAGGCATTTCCTGAACCATGGAATGAGAATTCTGTGGAAGTATTGCCTTGT GAATTTGCTGCTATTTTAGTTTTGTCTTTGCTGTAAAATTGTAGCATTAAACAATCATTG TTGTTAATAGGCTCTCTTTTTAAAACAATTATGTGAAATGTATAGCTGCTCTTGAAAAGC GGCTATTTGCCTTTTTTTTCTTTGAACTTTGAAGCTAGTGCATTGGAGAAATGCACCTCC CTCCCCCTTTGGAATGCTGTATTGATGTAGTATAATTATTCCTGGTTTTGTAATTTTTCC TGATAATATCCTCCCTTGACTCTTTTAAAAAAAATGTTTTCTCCCTCCACCCAAGTTTTG TACTTGATTGTATTGTTAGTCTGTTTTTAAATGTTTTGCCTGGTTTCTCTTCAATGTTTG TGTATATAAACTAATCTTGGTGATACTGTACATAGCTGTTTGAAATGCCAGAATGACTTC TGACTATTCCAAGCTTTTCACAAAATATATTTTATCTGTGATTAGCCATTTGACTAATAA TACTGGCTAACAGATGTTGCAAAAAAAAAATTTGTCTGTTTTCCTATTAATTTTGGTTTA AAACGTTTGCACTTGTCTGTTTGACTTGTGTTTTATTAACATTGATTGGCATATTAAAAG TCACTCTGAGCTTAAAAAAAAAAA |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| TTGGCCGGGGCTTGAGGTATATTCATTCAATGTCTTTGGTTCACATGGATATAAAGCCTA GTAATATTTTCATATCTCGAACTTCAATCCCAAATGCTGCCTCTGAAGAAGGAGATGAAG ATGACTGGGCATCCAACAAAGTTATGTTTAAAATAGGTGACCTTGGGCATGTAACAAGAA TCTCTAGTCCACAAGTTGAAGAGGGTGATAGCCGTTTTCTTGCAAATGAAGTTTTGCAGG AGAACTATACTCATCTACCAAAAGCGGATATTTTTGCCCTTGCCCTCACAGTGGTATGTG CTGCTGGTGCTGAGCCTCTTCCCAGAAATGGAGACCAATGGCATGAAATCAGGCAGGGGA GATTACCTCGGATTCCACAAGTGCTTTCTCAAGAATTTACAGAGTTGCTAAAAGTTATGA TTCATCCAGATCCAGAGAGAAGACCTTCAGCAATGGCACTGGTAAAGCATTCAGTATTGC TATCTGCTTCTAGGAAGAGTGCAGAACAATTACGAATAGAATTGAATGCTGAAAAGTTCA AAAACTCACTTTTGCAGAAAGAACTCAAGAAAGCCCAGATGGCAAAAGCTGCAGCTGAGG AAAGGGCACTCTTCACTGACCGGATGGCCACCAGGTCCACCACCCAGAGTAATAGAACAT CTCGACTTATTGGAAAGAAAATGAACCGCTCTGTCAGCCTTACCATATACTGAACTACTC ATTTCCCACCTCCCCCAGAAACTGTGACAAGAGGAAGCTAGGTTGAAATCACTGCTAAAA TCCAGTTTGCAAATTACTTTCTCAATCGGTGTCAGTAGTTTTACTGAGAAACCTTTTAGG ACTTGTACTTGTGAGTTACAGTTGAAAACTGTATTTTGACCAGTGCTGTATCAGGCTTTC ATCTAGTCTTACCAGTCTGTCTTCTGTAGGATGTCAGTCACTGTCGGATGTTACACCAGC CTTTCCAGGGTTTAACCACTGTGGTGGTGTGCTGCTTATAGTTCGCTATTGCATTGTAGT AAAAGGTATCTTTCCCTGTAGTGACCTGTAAAAAGGATGCAAGGGCTTTGTTACAAACAT ATTTTCCCTTTGAAAAGGGAAGTGTAAGAGACTCAGTACTCCTCAGCCTTCAATGTACCT GTGTGTCAATCTTATATTTCTTTTTTTTAATTGTGAATTATACTTGTATATCCAACTGGG AGCACTTTTTAGGCATTTCCTGAACCATGGAATGAGAATTCTGTGGAAGTATTGCCTTGT GAATTTGCTGCTATTTTAGTTTTGTCTTTGCTGTAAAATTGTAGCATTAAACAATCATTG TTGTTAATAGGCTCTCTTTTTAAAACAATTATGTGAAATGTATAGCTGCTCTTGAAAAGC GGCTATTTGCCTTTTTTTTCTTTGAACTTTGAAGCTAGTGCATTGGAGAAATGCACCTCC CTCCCCCTTTGGAATGCTGTATTGATGTAGTATAATTATTCCTGGTTTTGTAATTTTTCC TGATAATATCCTCCCTTGACTCTTTTAAAAAAAATGTTTTCTCCCTCCACCCAAGTTTTG TACTTGATTGTATTGTTAGTCTGTTTTTAAATGTTTTGCCTGGTTTCTCTTCAATGTTTG TGTATATAAACTAATCTTGGTGATACTGTACATAGCTGTTTGAAATGCCAGAATGACTTC TGACTATTCCAAGCTTTTCACAAAATATATTTTATCTGTGATTAGCCATTTGACTAATAA TACTGGCTAACAGATGTTGCAAAAAAAAAATTTGTCTGTTTTCCTATTAATTTTGGTTTA AAACGTTTGCACTTGTCTGTTTGACTTGTGTTTTATTAACATTGATTGGCATATTAAAAG TCACTCTGAGCTTAAAAAAAAAAA |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 2 entry(ies) | More info |
| Predicted RNA structure(s): 2 entry(ies) | Help | Less info |
| 1206-1436, - strand, RNAz p=0.985315 | |
| 1632-1749, - strand, RNAz p=0.897241 |
| Predicted RNA structure(s): 2 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 1206-1436, - strand, RNAz p=0.985315 | |
| 1632-1749, - strand, RNAz p=0.897241 |
| Aligned organism(s): 47 entry(ies) | More info |
| Aligned organism(s): 47 entry(ies) | Help | Less info |
| 241-422, gnl|bosTau2|chr15 (25880995-25881176) | |
| 241-422, gnl|canFam2|chr21 (36045252-36045084) | |
| 241-422, gnl|canFam2|chr21 (36045075-36045259) | |
| 241-422, gnl|canFam2|chr21 (36045251-36045083) | |
| 241-422, gnl|danRer3|chr18 (18104737-18104905) | |
| 241-422, gnl|danRer3|chr18 (18104922-18104730) | |
| 241-422, gnl|danRer3|chr18 (18104738-18104999) | |
| 241-422, gnl|dasNov1|scaffold_9263 (101383-101215) | |
| 241-422, gnl|dasNov1|scaffold_9263 (101206-101388) | |
| 241-422, gnl|dasNov1|scaffold_9263 (101382-101214) | |
| 241-422, gnl|echTel1|scaffold_317831 (74139-74307) | |
| 241-422, gnl|echTel1|scaffold_317831 (74316-74132) | |
| 241-422, gnl|echTel1|scaffold_317831 (74140-74308) | |
| 241-422, gnl|fr1|chrUn (268790079-268790259) | |
| 241-422, gnl|fr1|chrUn (268790251-268790000) | |
| 241-422, gnl|galGal2|chr5 (6839709-6839525) | |
| 241-422, gnl|galGal2|chr5 (6839533-6839701) | |
| 241-422, gnl|hg17|chr11 (9564565-9564749) | |
| 241-422, gnl|Hg17|chr11 (9564570-9564751) | |
| 241-422, gnl|hg17|chr17 (22116820-22116985) | |
| 241-422, gnl|hg17|chr4 (96141-96305) | |
| 241-422, gnl|loxAfr1|scaffold_11708 (91801-91969) | |
| 241-422, gnl|loxAfr1|scaffold_11708 (91978-91794) | |
| 241-422, gnl|loxAfr1|scaffold_11708 (91802-91970) | |
| 241-422, gnl|mm7|chr7 (106054589-106054422) | |
| 241-422, gnl|mm7|chr7 (106054413-106054597) | |
| 241-422, gnl|mm7|chr7 (106054589-106054421) | |
| 241-422, gnl|Mm7|chr7 (106054418-106054599) | |
| 241-422, gnl|monDom2|scaffold_10 (59782020-59782202) | |
| 241-422, gnl|monDom2|scaffold_10 (59782194-59782026) | |
| 241-422, gnl|oryCun1|scaffold_205626 (51521-51339) | |
| 241-422, gnl|panTro1|chr3 (105568-105734) | |
| 241-422, gnl|panTro1|chr9 (9743186-9743370) | |
| 241-422, gnl|panTro1|chrUn_random (26979255-26979090) | |
| 241-422, gnl|rheMac2|chr1 (3872351-3872196) | |
| 241-422, gnl|rheMac2|chr1 (3872350-3872208) | |
| 241-422, gnl|rheMac2|chr14 (62363992-62363808) | |
| 241-422, gnl|rn3|chr1 (167895767-167895599) | |
| 241-422, gnl|rn3|chr1 (167895590-167895774) | |
| 241-422, gnl|rn3|chr1 (167895766-167895598) | |
| 241-422, gnl|tetNig1|chr13 (11537659-11537508) | |
| 241-422, gnl|tetNig1|chr13 (11537505-11537681) | |
| 241-422, gnl|tetNig1|chr13 (11537673-11537434) | |
| 241-422, gnl|xenTro1|scaffold_447 (864356-864162) | |
| 560-1874, gnl|bosTau2|chr15 (25882150-25883490) | |
| 560-1874, gnl|Hg17|chr11 (9566572-9567875) | |
| 560-1874, gnl|Mm7|chr7 (106057227-106058551) |
| Aligned organism(s): 47 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 241-422, gnl|bosTau2|chr15 (25880995-25881176) | |
| 241-422, gnl|canFam2|chr21 (36045252-36045084) | |
| 241-422, gnl|canFam2|chr21 (36045075-36045259) | |
| 241-422, gnl|canFam2|chr21 (36045251-36045083) | |
| 241-422, gnl|danRer3|chr18 (18104737-18104905) | |
| 241-422, gnl|danRer3|chr18 (18104922-18104730) | |
| 241-422, gnl|danRer3|chr18 (18104738-18104999) | |
| 241-422, gnl|dasNov1|scaffold_9263 (101383-101215) | |
| 241-422, gnl|dasNov1|scaffold_9263 (101206-101388) | |
| 241-422, gnl|dasNov1|scaffold_9263 (101382-101214) | |
| 241-422, gnl|echTel1|scaffold_317831 (74139-74307) | |
| 241-422, gnl|echTel1|scaffold_317831 (74316-74132) | |
| 241-422, gnl|echTel1|scaffold_317831 (74140-74308) | |
| 241-422, gnl|fr1|chrUn (268790079-268790259) | |
| 241-422, gnl|fr1|chrUn (268790251-268790000) | |
| 241-422, gnl|galGal2|chr5 (6839709-6839525) | |
| 241-422, gnl|galGal2|chr5 (6839533-6839701) | |
| 241-422, gnl|hg17|chr11 (9564565-9564749) | |
| 241-422, gnl|Hg17|chr11 (9564570-9564751) | |
| 241-422, gnl|hg17|chr17 (22116820-22116985) | |
| 241-422, gnl|hg17|chr4 (96141-96305) | |
| 241-422, gnl|loxAfr1|scaffold_11708 (91801-91969) | |
| 241-422, gnl|loxAfr1|scaffold_11708 (91978-91794) | |
| 241-422, gnl|loxAfr1|scaffold_11708 (91802-91970) | |
| 241-422, gnl|mm7|chr7 (106054589-106054422) | |
| 241-422, gnl|mm7|chr7 (106054413-106054597) | |
| 241-422, gnl|mm7|chr7 (106054589-106054421) | |
| 241-422, gnl|Mm7|chr7 (106054418-106054599) | |
| 241-422, gnl|monDom2|scaffold_10 (59782020-59782202) | |
| 241-422, gnl|monDom2|scaffold_10 (59782194-59782026) | |
| 241-422, gnl|oryCun1|scaffold_205626 (51521-51339) | |
| 241-422, gnl|panTro1|chr3 (105568-105734) | |
| 241-422, gnl|panTro1|chr9 (9743186-9743370) | |
| 241-422, gnl|panTro1|chrUn_random (26979255-26979090) | |
| 241-422, gnl|rheMac2|chr1 (3872351-3872196) | |
| 241-422, gnl|rheMac2|chr1 (3872350-3872208) | |
| 241-422, gnl|rheMac2|chr14 (62363992-62363808) | |
| 241-422, gnl|rn3|chr1 (167895767-167895599) | |
| 241-422, gnl|rn3|chr1 (167895590-167895774) | |
| 241-422, gnl|rn3|chr1 (167895766-167895598) | |
| 241-422, gnl|tetNig1|chr13 (11537659-11537508) | |
| 241-422, gnl|tetNig1|chr13 (11537505-11537681) | |
| 241-422, gnl|tetNig1|chr13 (11537673-11537434) | |
| 241-422, gnl|xenTro1|scaffold_447 (864356-864162) | |
| 560-1874, gnl|bosTau2|chr15 (25882150-25883490) | |
| 560-1874, gnl|Hg17|chr11 (9566572-9567875) | |
| 560-1874, gnl|Mm7|chr7 (106057227-106058551) |
| Expressed library(ies): 14 entry(ies) | More info |
| Expressed library(ies): 14 entry(ies) | Help | Less info |
| thg (0.380373) | |
| vin (0.332557) | |
| liv (0.292569) | |
| ecc (0.23007) | |
| cty (0.20816) | |
| hea (0.204499) | |
| mgm (0.180343) | |
| sin (0.174948) | |
| rec (0.17307) | |
| eye (0.170503) | |
| mga (0.160205) | |
| pty (0.142714) | |
| ova (0.129132) | |
| tra (0.123092) |
| Expressed library(ies): 14 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| thg (0.380373) | |
| vin (0.332557) | |
| liv (0.292569) | |
| ecc (0.23007) | |
| cty (0.20816) | |
| hea (0.204499) | |
| mgm (0.180343) | |
| sin (0.174948) | |
| rec (0.17307) | |
| eye (0.170503) | |
| mga (0.160205) | |
| pty (0.142714) | |
| ova (0.129132) | |
| tra (0.123092) |