Non-Coding RNA Search

Ss1.1-Pig4-TMW8040J23.3

Sequence:


               
               GCAGTCAGGAAAAGCAGCTGTCTGCTGCCGAAGACAACGACGAGGTCTGGTCTGACAGTG
AGCAGAGCTTTCTGGATCCTGACATCGGGGGAGTGGCTGTGGCTCCAACTCATGGGTCAA
TTCTCATCGAGTGTGCAAAGCGCGAGCTTCATGCCACAACCCCTTTGAAGAATCCCAACA
GGAACCACCCCACCAGGATCTCCCTTGTCTTTTACCAGCACAAGAGCATGAATGAGCCAA
AACACGGCTTGGCACTCTGGGAAGCCAAAATGGCCGAAAAAGCCCGTGAGAAAGAGGAAG
AGTGTGAAAAATATGGCCCAGACTATGTGCCTCAGAAGACCCACGGCAAAAAAGTGAAAC
GGGAGCCCACTGAGCCGCATGAACCTTCAGAGCCCACTTACCTGCGCTTCATCAGGTCCC
TTGCTGAAAGGACCATGTCCGTGACCACAGACTCCACAGTAACTACATCTCCATATGCCT
TCACTCGGGTCACCGGGCCTTACAACAGATACGTATGATGTTGCCCCTGGCGTTGGTTAC
CTCATTTGAAAAGACCACAACCAACCTGCCCATGGTCGTGTCTTTCTCATGACGTGGGCA
GTGGGGAAAGGACACAGTATTCTTGACAGATGTGGTGAGATGAACCTCAGCTCACCAGCA
AAAAAAGAGGTCATCTTACCATAGCACTTAATTTCCACTGACTCCTAGGTGGTCACAGAT
GAGATCTGGGCAAAAGACCAAAGCATTCTATGCAAAGGGAAGGTGGAGAAGAAAGTGTTC
CACAATTTACATTTTTTAAACACTGGTTCTATTATTGGATGAAATGATGTGTAAATGTGA
TTTTTCCCCCCTTACAACTCTACACATCTGTGACCACTCTTAATAATACCAAGTTTGCAT
AGTCATGGAACACAAATCAGACAAGTACTGTAGTATTACAGGGGCAGGAATCTTAAAATA
CCATCTGGTGCTGAATACACAATGTACTGAAATACTGGAATTATGGCTTTTTAAAGTGCA
GTTTTTAATCTTAATATTAACTTTTATTTATCAAAATAGCTACAGAAAACATAAATGAAT
AGACAGCAAAACACTGAATTTGTTTGGATGTTCTAAGAAATGGTGCTAAGAAAATGGTGT
CTTTAACAGTCAAAAATTTAATGCCTTTATATCATCAAGATCCTATCAGTGTCCTCCAAT
GCCCTTGAATAATGGGGGTACATTTTCATTCAAGTTTTTAATCACAAGTACCTATTCTTA
CACAAGCTTAGTTTTCAAAACGTGGACATTTTAAAGGCCTCTGGATTT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GCAGTCAGGAAAAGCAGCTGTCTGCTGCCGAAGACAACGACGAGGTCTGGTCTGACAGTG
AGCAGAGCTTTCTGGATCCTGACATCGGGGGAGTGGCTGTGGCTCCAACTCATGGGTCAA
TTCTCATCGAGTGTGCAAAGCGCGAGCTTCATGCCACAACCCCTTTGAAGAATCCCAACA
GGAACCACCCCACCAGGATCTCCCTTGTCTTTTACCAGCACAAGAGCATGAATGAGCCAA
AACACGGCTTGGCACTCTGGGAAGCCAAAATGGCCGAAAAAGCCCGTGAGAAAGAGGAAG
AGTGTGAAAAATATGGCCCAGACTATGTGCCTCAGAAGACCCACGGCAAAAAAGTGAAAC
GGGAGCCCACTGAGCCGCATGAACCTTCAGAGCCCACTTACCTGCGCTTCATCAGGTCCC
TTGCTGAAAGGACCATGTCCGTGACCACAGACTCCACAGTAACTACATCTCCATATGCCT
TCACTCGGGTCACCGGGCCTTACAACAGATACGTATGATGTTGCCCCTGGCGTTGGTTAC
CTCATTTGAAAAGACCACAACCAACCTGCCCATGGTCGTGTCTTTCTCATGACGTGGGCA
GTGGGGAAAGGACACAGTATTCTTGACAGATGTGGTGAGATGAACCTCAGCTCACCAGCA
AAAAAAGAGGTCATCTTACCATAGCACTTAATTTCCACTGACTCCTAGGTGGTCACAGAT
GAGATCTGGGCAAAAGACCAAAGCATTCTATGCAAAGGGAAGGTGGAGAAGAAAGTGTTC
CACAATTTACATTTTTTAAACACTGGTTCTATTATTGGATGAAATGATGTGTAAATGTGA
TTTTTCCCCCCTTACAACTCTACACATCTGTGACCACTCTTAATAATACCAAGTTTGCAT
AGTCATGGAACACAAATCAGACAAGTACTGTAGTATTACAGGGGCAGGAATCTTAAAATA
CCATCTGGTGCTGAATACACAATGTACTGAAATACTGGAATTATGGCTTTTTAAAGTGCA
GTTTTTAATCTTAATATTAACTTTTATTTATCAAAATAGCTACAGAAAACATAAATGAAT
AGACAGCAAAACACTGAATTTGTTTGGATGTTCTAAGAAATGGTGCTAAGAAAATGGTGT
CTTTAACAGTCAAAAATTTAATGCCTTTATATCATCAAGATCCTATCAGTGTCCTCCAAT
GCCCTTGAATAATGGGGGTACATTTTCATTCAAGTTTTTAATCACAAGTACCTATTCTTA
CACAAGCTTAGTTTTCAAAACGTGGACATTTTAAAGGCCTCTGGATTT

Predicted RNA structure(s): 2 entry(ies)

More info

Predicted RNA structure(s): 2 entry(ies)

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               56-335, - strand, RNAz p=0.823382
               

               
               1190-1308, - strand, RNAz p=0.992669

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               56-335, - strand, RNAz p=0.823382
               

               
               1190-1308, - strand, RNAz p=0.992669

Predicted microRNA(s): 1 entry(ies)

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Predicted microRNA(s): 1 entry(ies)

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               90-201, - strand, RNAmicro p=0.935491

Predicted microRNA(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted microRNA,
PigEST conread reading direction of prediction,
miRNA classificator p of RNAmicro


               
               90-201, - strand, RNAmicro p=0.935491

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               1-1308, gnl|bosTau2|chr6 (6146461-6147755)
               

               
               1-1308, gnl|Hg17|chr4 (106554739-106556062)
               

               
               1-1308, gnl|Mm7|chr3 (133264189-133262943)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-1308, gnl|bosTau2|chr6 (6146461-6147755)
               

               
               1-1308, gnl|Hg17|chr4 (106554739-106556062)
               

               
               1-1308, gnl|Mm7|chr3 (133264189-133262943)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               cbl (0.114797)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               cbl (0.114797)

	56-335, - strand, RNAz p=0.823382
	1190-1308, - strand, RNAz p=0.992669

	1-1308, gnl\|bosTau2\|chr6 (6146461-6147755)
	1-1308, gnl\|Hg17\|chr4 (106554739-106556062)
	1-1308, gnl\|Mm7\|chr3 (133264189-133262943)