Non-Coding RNA Search

Ss1.1-Pig4-TMW8040K04.3

Sequence:


               
               GCTAGTGTAAAAACACCGCTCTGGGCCCCGCCTTTGATCTCGTTGGTGGGGCTGGGGGAT
GAGAGCTGCATCGTGCGGGACAAGTCGCCGGCGGCGCCCGACGGAGCAGAAGAGGAGAGA
GCATGGAGCTGGAGAGGATCGTCAGTACAGCCCTCCTTGCCTTTGTCCAGACGCACCTCC
CAGAGGCCGACCTCAGCGGCTTGGATGAGGTCATCTTCTCCTACGTGCTTGGGGTCCTGG
AAGACCTGGGCCCCTCAGGCCCATCAGAGGAGAACTTCGACATGGAGGCCTTCACTGAGA
TGATGGAGGCCTACGTGCCTGGCTTTGCCCACATCCCAAGGAGTACAATAGGGGACATGA
TGCAGAAGCTCTCAGGGCAGTTAAGTGGTGCCAGGAACAAAGAGAACCTGCAACCGCAGA
GCTCTGCGGTCCAAGGTCAGGTATCCGCCTCCTCAGAGACCCTGCAGCGGCCTGAAAACC
TCAAAGAAGAGACTAGGTCTTCTCCTAGTGCTGCTGGGGACACCCCAGATGAGGCAGCCG
GCACTGAGGAGGAGCTGCTGCCAGGGGTGGATGTACTCCTGGAGGTGTTTCCTACCTGTT
CGGTGGAACAGGCCCAGTGGGTGCTGGCCAAAGCTCGGGGGGACTTGGAAGAAGCTGTGC
AGATGCTGGTAGAGGGGAAGGAGGAGGGGCCTCCAGCCTGGGATGGCCCCAACCAGGACC
TGCCTAGGCGCCTCAGAGGCCCCCAAAAGGATGAGCTGAAGTCCTTCATCCTGCAGAAGT
ACATGATGGTGGATAGCGCAGAGGATCAGAAGATTCACCGGCCCATGGCTCCCAAGGAGG
CTCCCAAGAAGCTGATCCGATACATCGACAACCAGATAGTGAGCACCAAAGGGGAGCGAT
TCAAAGATGTGCGGAACCCTGAGGCTGAGGAGATGAAGGCCACATACATCAACCTTAAGC
CAGCCAGAAAGTACCGCTTCCACTGAGGCACTCGCCGGACTCAGCCCGAGCCTTTTAGGC
TCAGATCCCAGAGGGATGCAGGAGCCCTACACTCCCACACAGGGCACACCCTATCTCCTG
TCCCCCTTCTTTCCCAACTTCCCTTGCTCCACAGTGTTAACCTCCTCTTGGAGCTGCCAC
CGGCACAGTAAAGGTAGCCCGAGGAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
AAAAAAAAAAAAAAAAAAGGGGGG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GCTAGTGTAAAAACACCGCTCTGGGCCCCGCCTTTGATCTCGTTGGTGGGGCTGGGGGAT
GAGAGCTGCATCGTGCGGGACAAGTCGCCGGCGGCGCCCGACGGAGCAGAAGAGGAGAGA
GCATGGAGCTGGAGAGGATCGTCAGTACAGCCCTCCTTGCCTTTGTCCAGACGCACCTCC
CAGAGGCCGACCTCAGCGGCTTGGATGAGGTCATCTTCTCCTACGTGCTTGGGGTCCTGG
AAGACCTGGGCCCCTCAGGCCCATCAGAGGAGAACTTCGACATGGAGGCCTTCACTGAGA
TGATGGAGGCCTACGTGCCTGGCTTTGCCCACATCCCAAGGAGTACAATAGGGGACATGA
TGCAGAAGCTCTCAGGGCAGTTAAGTGGTGCCAGGAACAAAGAGAACCTGCAACCGCAGA
GCTCTGCGGTCCAAGGTCAGGTATCCGCCTCCTCAGAGACCCTGCAGCGGCCTGAAAACC
TCAAAGAAGAGACTAGGTCTTCTCCTAGTGCTGCTGGGGACACCCCAGATGAGGCAGCCG
GCACTGAGGAGGAGCTGCTGCCAGGGGTGGATGTACTCCTGGAGGTGTTTCCTACCTGTT
CGGTGGAACAGGCCCAGTGGGTGCTGGCCAAAGCTCGGGGGGACTTGGAAGAAGCTGTGC
AGATGCTGGTAGAGGGGAAGGAGGAGGGGCCTCCAGCCTGGGATGGCCCCAACCAGGACC
TGCCTAGGCGCCTCAGAGGCCCCCAAAAGGATGAGCTGAAGTCCTTCATCCTGCAGAAGT
ACATGATGGTGGATAGCGCAGAGGATCAGAAGATTCACCGGCCCATGGCTCCCAAGGAGG
CTCCCAAGAAGCTGATCCGATACATCGACAACCAGATAGTGAGCACCAAAGGGGAGCGAT
TCAAAGATGTGCGGAACCCTGAGGCTGAGGAGATGAAGGCCACATACATCAACCTTAAGC
CAGCCAGAAAGTACCGCTTCCACTGAGGCACTCGCCGGACTCAGCCCGAGCCTTTTAGGC
TCAGATCCCAGAGGGATGCAGGAGCCCTACACTCCCACACAGGGCACACCCTATCTCCTG
TCCCCCTTCTTTCCCAACTTCCCTTGCTCCACAGTGTTAACCTCCTCTTGGAGCTGCCAC
CGGCACAGTAAAGGTAGCCCGAGGAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
AAAAAAAAAAAAAAAAAAGGGGGG

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|61859616|ref|XP_598106.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|61859616|ref|XP_598106.1|

Predicted RNA structure(s): 3 entry(ies)

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Predicted RNA structure(s): 3 entry(ies)

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               188-410, + strand, RNAz p=0.980742
               

               
               479-712, - strand, RNAz p=0.99902
               

               
               972-1187, - strand, RNAz p=0.852009

Predicted RNA structure(s): 3 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               188-410, + strand, RNAz p=0.980742
               

               
               479-712, - strand, RNAz p=0.99902
               

               
               972-1187, - strand, RNAz p=0.852009

Aligned organism(s): 4 entry(ies)

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Aligned organism(s): 4 entry(ies)

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               30-410, gnl|bosTau2|chr19 (14609453-14609834)
               


               
               455-1187, gnl|bosTau2|chr19 (14609825-14610536)
               

               
               455-1187, gnl|Hg17|chr10 (104174247-104172992)
               

               
               455-1187, gnl|Mm7|chr19 (46228392-46227175)

Aligned organism(s): 4 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               30-410, gnl|bosTau2|chr19 (14609453-14609834)
               


               
               455-1187, gnl|bosTau2|chr19 (14609825-14610536)
               

               
               455-1187, gnl|Hg17|chr10 (104174247-104172992)
               

               
               455-1187, gnl|Mm7|chr19 (46228392-46227175)

Expressed library(ies): 19 entry(ies)

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Expressed library(ies): 19 entry(ies)

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               clu (0.837521)
               

               
               nmm (0.398406)
               

               
               fcc (0.39557)
               

               
               cty (0.31224)
               

               
               hyp (0.285673)
               

               
               fce (0.271592)
               

               
               eru (0.240096)
               

               
               nms (0.213858)
               

               
               mas (0.210305)
               

               
               col (0.195008)
               

               
               nlu (0.191681)
               

               
               fhi (0.169578)
               

               
               csp (0.161186)
               

               
               pty (0.142714)
               

               
               hlv (0.139256)
               

               
               cly (0.120642)
               

               
               ebs (0.118301)
               

               
               ecc (0.115035)
               

               
               jej (0.0989218)

Expressed library(ies): 19 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               clu (0.837521)
               

               
               nmm (0.398406)
               

               
               fcc (0.39557)
               

               
               cty (0.31224)
               

               
               hyp (0.285673)
               

               
               fce (0.271592)
               

               
               eru (0.240096)
               

               
               nms (0.213858)
               

               
               mas (0.210305)
               

               
               col (0.195008)
               

               
               nlu (0.191681)
               

               
               fhi (0.169578)
               

               
               csp (0.161186)
               

               
               pty (0.142714)
               

               
               hlv (0.139256)
               

               
               cly (0.120642)
               

               
               ebs (0.118301)
               

               
               ecc (0.115035)
               

               
               jej (0.0989218)

	188-410, + strand, RNAz p=0.980742
	479-712, - strand, RNAz p=0.99902
	972-1187, - strand, RNAz p=0.852009

	30-410, gnl\|bosTau2\|chr19 (14609453-14609834)

	455-1187, gnl\|bosTau2\|chr19 (14609825-14610536)
	455-1187, gnl\|Hg17\|chr10 (104174247-104172992)
	455-1187, gnl\|Mm7\|chr19 (46228392-46227175)

	clu (0.837521)
	nmm (0.398406)
	fcc (0.39557)
	cty (0.31224)
	hyp (0.285673)
	fce (0.271592)
	eru (0.240096)
	nms (0.213858)
	mas (0.210305)
	col (0.195008)
	nlu (0.191681)
	fhi (0.169578)
	csp (0.161186)
	pty (0.142714)
	hlv (0.139256)
	cly (0.120642)
	ebs (0.118301)
	ecc (0.115035)
	jej (0.0989218)