Non-Coding RNA Search

Ss1.1-Pig4-TMW8040K06.5

Sequence:


               
               TGGAAGACCTCCTGTAGATATTAGAGAGAATCTTGTGAGGCCAGGCATAGATCATCTTGG
TCGGAGAGACCACTTTGGCTTTACTCCAGAGAAGCCGTGGGGGCATAGAGATTTCGACGA
GAGAGAGCATCGGGTTCTGCCTGTCTATGCGGGGCCGAAAGGCTTACATGAAGAAAGAGG
GAGATTTCGGTCTGGAAACTATCGGTTTGATCCTAGAAGTGGTCCTTGGAACAGAGGATT
TGGACAAGAGGTTCACAGAGATTTTGATGACCGCAGAAGACCCTGGGAGAGGCAAAGGGA
CAGGGACGACAGAGATTTTGATTTCTGCAGAGAAATGAACGGAAATCGGCTTGGACGAGA
TAGAATTCAGAACACCTGGGTCCCCCCACCTCATGCTCGGGTTTTTGATTTTTTTGAAGG
GGCCACTTCGCAACGAAAAGGTGATAATGTGCCTCAGGTTAATGGTGAAAATACCGAGAG
ACATGCTCAGCCACCACCTTTACCAGCACAGAGCGATCCTGAACTTTATGAAAAACTGAC
ATCTTCAAGTGAAATAAGCAAGGAGAAGAGTGACACAGTTGCTGATATAGAAAGTGAACC
AGTGGTAGAAAGCACAGAAACTGAGGGGACATAATCATCACTCAGTAGGTAAAAGATACA
TTTTGTAAAGTTGTCATCTCTCTGTAATAGATTAATGGCTGACTGGACCATAGTTGTTCA
CTTTTGTCTGCCAGAATTAAGTTAATCTGATGTTCATGTTCACCTTTCTCTTAAAATAAT
TGTACAACTGACTTGTATAGACATTGTTCTTAATATGAACATGGTAGGTAAACATTTTTT
TATTTTTCTGATAAAATATAAATGTTGCCCCCAGATTCTTTTAACTTCAAGGAAATGAAT
AACAGCTTGTCAGAGACTTCCTATGGAAGAAGGAATTTTTTAGATACTACCATTAGGTTG
GATATGGTAATAGATATATTTCAAATAGCAAGTGGTGGTATATCTTATCCATATCTTTAG
GCTGCTGCAGAATTTTAAGGTAATAGACAAAGCTGTGATATTTTATGCAAAGACTGGCTC
TAGATATTTGAGGAGCACAATACAGAGATTTTAAAAAGTGATTTTGTAAAATCTACACTA
TGGTCTCTGTTTCTCCAAAGTAAGTGTTTGTGATTTGTTCCTCATACTCAGTGAGTGAAA
AAGAAAAAAGAAAACAAGAAAACAACATAAATATTAAAGTACGTTTCAATGTTGGGTGAA
TTTTGTTTTTAGATGCCAATAAAACTTATTTGTTTG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TGGAAGACCTCCTGTAGATATTAGAGAGAATCTTGTGAGGCCAGGCATAGATCATCTTGG
TCGGAGAGACCACTTTGGCTTTACTCCAGAGAAGCCGTGGGGGCATAGAGATTTCGACGA
GAGAGAGCATCGGGTTCTGCCTGTCTATGCGGGGCCGAAAGGCTTACATGAAGAAAGAGG
GAGATTTCGGTCTGGAAACTATCGGTTTGATCCTAGAAGTGGTCCTTGGAACAGAGGATT
TGGACAAGAGGTTCACAGAGATTTTGATGACCGCAGAAGACCCTGGGAGAGGCAAAGGGA
CAGGGACGACAGAGATTTTGATTTCTGCAGAGAAATGAACGGAAATCGGCTTGGACGAGA
TAGAATTCAGAACACCTGGGTCCCCCCACCTCATGCTCGGGTTTTTGATTTTTTTGAAGG
GGCCACTTCGCAACGAAAAGGTGATAATGTGCCTCAGGTTAATGGTGAAAATACCGAGAG
ACATGCTCAGCCACCACCTTTACCAGCACAGAGCGATCCTGAACTTTATGAAAAACTGAC
ATCTTCAAGTGAAATAAGCAAGGAGAAGAGTGACACAGTTGCTGATATAGAAAGTGAACC
AGTGGTAGAAAGCACAGAAACTGAGGGGACATAATCATCACTCAGTAGGTAAAAGATACA
TTTTGTAAAGTTGTCATCTCTCTGTAATAGATTAATGGCTGACTGGACCATAGTTGTTCA
CTTTTGTCTGCCAGAATTAAGTTAATCTGATGTTCATGTTCACCTTTCTCTTAAAATAAT
TGTACAACTGACTTGTATAGACATTGTTCTTAATATGAACATGGTAGGTAAACATTTTTT
TATTTTTCTGATAAAATATAAATGTTGCCCCCAGATTCTTTTAACTTCAAGGAAATGAAT
AACAGCTTGTCAGAGACTTCCTATGGAAGAAGGAATTTTTTAGATACTACCATTAGGTTG
GATATGGTAATAGATATATTTCAAATAGCAAGTGGTGGTATATCTTATCCATATCTTTAG
GCTGCTGCAGAATTTTAAGGTAATAGACAAAGCTGTGATATTTTATGCAAAGACTGGCTC
TAGATATTTGAGGAGCACAATACAGAGATTTTAAAAAGTGATTTTGTAAAATCTACACTA
TGGTCTCTGTTTCTCCAAAGTAAGTGTTTGTGATTTGTTCCTCATACTCAGTGAGTGAAA
AAGAAAAAAGAAAACAAGAAAACAACATAAATATTAAAGTACGTTTCAATGTTGGGTGAA
TTTTGTTTTTAGATGCCAATAAAACTTATTTGTTTG

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|10435925|dbj|BAB14705.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|10435925|dbj|BAB14705.1|

Predicted RNA structure(s): 2 entry(ies)

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Predicted RNA structure(s): 2 entry(ies)

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               1-196, - strand, RNAz p=0.838125
               

               
               717-836, - strand, RNAz p=0.921244

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               1-196, - strand, RNAz p=0.838125
               

               
               717-836, - strand, RNAz p=0.921244

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               1-1296, gnl|bosTau2|chr9 (54298629-54297342)
               

               
               1-1296, gnl|Hg17|chr6 (155246006-155247303)
               

               
               1-1296, gnl|Mm7|chr17 (3197578-3198856)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-1296, gnl|bosTau2|chr9 (54298629-54297342)
               

               
               1-1296, gnl|Hg17|chr6 (155246006-155247303)
               

               
               1-1296, gnl|Mm7|chr17 (3197578-3198856)

Expressed library(ies): 16 entry(ies)

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Expressed library(ies): 16 entry(ies)

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               amn (0.417711)
               

               
               isp (0.300752)
               

               
               mgp (0.230681)
               

               
               fcc (0.197785)
               

               
               fty (0.17584)
               

               
               bfe (0.149858)
               

               
               liv (0.146284)
               

               
               lin (0.145603)
               

               
               spl (0.143184)
               

               
               hyp (0.142837)
               

               
               pla (0.133672)
               

               
               bla (0.124347)
               

               
               cly (0.120642)
               

               
               ebs (0.118301)
               

               
               jca (0.11396)
               

               
               eje (0.0988338)

Expressed library(ies): 16 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               amn (0.417711)
               

               
               isp (0.300752)
               

               
               mgp (0.230681)
               

               
               fcc (0.197785)
               

               
               fty (0.17584)
               

               
               bfe (0.149858)
               

               
               liv (0.146284)
               

               
               lin (0.145603)
               

               
               spl (0.143184)
               

               
               hyp (0.142837)
               

               
               pla (0.133672)
               

               
               bla (0.124347)
               

               
               cly (0.120642)
               

               
               ebs (0.118301)
               

               
               jca (0.11396)
               

               
               eje (0.0988338)

	1-196, - strand, RNAz p=0.838125
	717-836, - strand, RNAz p=0.921244

	1-1296, gnl\|bosTau2\|chr9 (54298629-54297342)
	1-1296, gnl\|Hg17\|chr6 (155246006-155247303)
	1-1296, gnl\|Mm7\|chr17 (3197578-3198856)

	amn (0.417711)
	isp (0.300752)
	mgp (0.230681)
	fcc (0.197785)
	fty (0.17584)
	bfe (0.149858)
	liv (0.146284)
	lin (0.145603)
	spl (0.143184)
	hyp (0.142837)
	pla (0.133672)
	bla (0.124347)
	cly (0.120642)
	ebs (0.118301)
	jca (0.11396)
	eje (0.0988338)