Ss1.1-Pig4-TMW8040K17.3
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| GACACCTGCTGTTTCCTGCATTATCAGAAAGATCAAGGCAGCTGGTGGAATCATCTTAAC AGCCAGCCACTGCCCTGGAGGACCAGGGGGAGAATTTGGAGTGAAGTTTAATGTGGCCAA TGGAGGTCCTGCACCAGATGTCGTCTCAGACAAAATCTATCAGATCAGCAAAACAATTGA GGAATATGCCATATGCCCTGACCTTCGAATTGACCTGTCTCGACTAGGAAGACAAGAATT TGACCTGGAGAACAAATTCAAACCATTTAGAGTGGAGATAGTGGACCCAGTGGATATCTA TCTCAACCTCCTTCGGACCATCTTTGATTTTAACGCCATCAAGAGTTTGCTGACTGGGCC TGGACAACTGAAGATCCGAGTTGATGCCATGCATGGAGTTATGGGACCCTATGTGAGAAA AGTCCTGTGTGATGAGCTGGGAGCCCCAGCCAATTCTGCAATCAACTGTGTTCCCCTGGA AGATTTTGGGGGCCAGCATCCTGACCCCAACCTGACATATGCAACAACCCTTCTGGAAGC TATGAAAGGAGGGGAATATGGATTTGGAGCTGCCTTTGATGCTGATGGGGACCGTTACAT GATCCTAGGCCAAAACGGCTTCTTTGTGAGCCCTTCCGACTCCCTGGCCATCATTGCCGC CAACCTCTCTTGCATTCCGTATTTCCGTCAGATGGGCGTCCGAGGGTTTGGGAGGAGCAT GCCCACCAGCACAGCCCTGGACAGAGTGGCCAAATCAATGAAGGTTCCAGTGTATGAGAC CCCAGCTGGATGGAGATTCTTCTCAAATCTGATGGACTCGGGCCGGTGCTCTCTTTGTGG AGAGGAGAGCTTTGGCACTGGCTCTGATCACCTCCGAGAGAAAGATGGCCTCTGGGCTGT CTTGGTCTGGCTCTCCATTATCGCCGCCCGGAAGCAGAGTGTGGAGGAAATTGTCCGAGA TCACTGGGCCAAATTTGGCCGCCACTACTATTGCAGGTTTGACTATGAGGGGTTAGAGCC CAAGACGACGTATTACATCATGAGGGACCTGGAGGCCTTGGTCACCGACAAGTCCTTCAT CGGCCAGCAGTTTGCTGTGGGGAGCCATGTCTACAGTGTGGCCAAGACAGACAGCTTTGA GTACGTGGACCCTGTGGATGGCACCGTGACCAAGAAACAGGGCCTGCGGATCATTTTCTC TGACGCGTCTCGGCTCATCTTCCGGCTCAGTTCCTCCAGTGGCGTGCGGGCCACCATCAG GCTGTACGCAGAAAGCTACGAGAGGGATCCCAGCGGTCACGACCAGGAGCCCCAGGCAGT GCTGAGCCCTCTCATAGCCATCGCGCTGAAAATATCCCAGATTCACGAGCGAACTGGCCG GAGGGGCCCCACTGTCATCACCTGAACGGAGGAAGACCACTCACCAAGCCAAAAGAGCGT GCTCGGCGGGGAACACTTCACTCATGCCTTCTTGCTACCTGTTTGTGCCTCTTACGACTT |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| GACACCTGCTGTTTCCTGCATTATCAGAAAGATCAAGGCAGCTGGTGGAATCATCTTAAC AGCCAGCCACTGCCCTGGAGGACCAGGGGGAGAATTTGGAGTGAAGTTTAATGTGGCCAA TGGAGGTCCTGCACCAGATGTCGTCTCAGACAAAATCTATCAGATCAGCAAAACAATTGA GGAATATGCCATATGCCCTGACCTTCGAATTGACCTGTCTCGACTAGGAAGACAAGAATT TGACCTGGAGAACAAATTCAAACCATTTAGAGTGGAGATAGTGGACCCAGTGGATATCTA TCTCAACCTCCTTCGGACCATCTTTGATTTTAACGCCATCAAGAGTTTGCTGACTGGGCC TGGACAACTGAAGATCCGAGTTGATGCCATGCATGGAGTTATGGGACCCTATGTGAGAAA AGTCCTGTGTGATGAGCTGGGAGCCCCAGCCAATTCTGCAATCAACTGTGTTCCCCTGGA AGATTTTGGGGGCCAGCATCCTGACCCCAACCTGACATATGCAACAACCCTTCTGGAAGC TATGAAAGGAGGGGAATATGGATTTGGAGCTGCCTTTGATGCTGATGGGGACCGTTACAT GATCCTAGGCCAAAACGGCTTCTTTGTGAGCCCTTCCGACTCCCTGGCCATCATTGCCGC CAACCTCTCTTGCATTCCGTATTTCCGTCAGATGGGCGTCCGAGGGTTTGGGAGGAGCAT GCCCACCAGCACAGCCCTGGACAGAGTGGCCAAATCAATGAAGGTTCCAGTGTATGAGAC CCCAGCTGGATGGAGATTCTTCTCAAATCTGATGGACTCGGGCCGGTGCTCTCTTTGTGG AGAGGAGAGCTTTGGCACTGGCTCTGATCACCTCCGAGAGAAAGATGGCCTCTGGGCTGT CTTGGTCTGGCTCTCCATTATCGCCGCCCGGAAGCAGAGTGTGGAGGAAATTGTCCGAGA TCACTGGGCCAAATTTGGCCGCCACTACTATTGCAGGTTTGACTATGAGGGGTTAGAGCC CAAGACGACGTATTACATCATGAGGGACCTGGAGGCCTTGGTCACCGACAAGTCCTTCAT CGGCCAGCAGTTTGCTGTGGGGAGCCATGTCTACAGTGTGGCCAAGACAGACAGCTTTGA GTACGTGGACCCTGTGGATGGCACCGTGACCAAGAAACAGGGCCTGCGGATCATTTTCTC TGACGCGTCTCGGCTCATCTTCCGGCTCAGTTCCTCCAGTGGCGTGCGGGCCACCATCAG GCTGTACGCAGAAAGCTACGAGAGGGATCCCAGCGGTCACGACCAGGAGCCCCAGGCAGT GCTGAGCCCTCTCATAGCCATCGCGCTGAAAATATCCCAGATTCACGAGCGAACTGGCCG GAGGGGCCCCACTGTCATCACCTGAACGGAGGAAGACCACTCACCAAGCCAAAAGAGCGT GCTCGGCGGGGAACACTTCACTCATGCCTTCTTGCTACCTGTTTGTGCCTCTTACGACTT |
| Coded protein: 1 entry(ies) | More info |
| Aligned organism(s): 37 entry(ies) | More info |
| Aligned organism(s): 37 entry(ies) | Help | Less info |
| 94-272, gnl|bosTau2|chr8 (21634893-21634715) | |
| 94-272, gnl|Hg17|chr9 (68228846-68229014) | |
| 94-272, gnl|Mm7|chr19 (24524448-24524281) | |
| 397-590, gnl|bosTau2|chr8 (21624878-21624685) | |
| 397-590, gnl|canFam2|chr1 (92047036-92047173) | |
| 397-590, gnl|danRer3|chr8 (24379345-24379476) | |
| 397-590, gnl|dasNov1|scaffold_126392 (1803-1666) | |
| 397-590, gnl|echTel1|scaffold_280991 (49340-49477) | |
| 397-590, gnl|fr1|chrUn (22222739-22222610) | |
| 397-590, gnl|galGal2|chrZ (10751102-10750971) | |
| 397-590, gnl|hg17|chr9 (66923175-66923312) | |
| 397-590, gnl|Hg17|chr9 (68236002-68236195) | |
| 397-590, gnl|loxAfr1|scaffold_26786 (21377-21246) | |
| 397-590, gnl|mm7|chr19 (24516388-24516525) | |
| 397-590, gnl|Mm7|chr19 (24516592-24516399) | |
| 397-590, gnl|monDom2|scaffold_17 (21860439-21860576) | |
| 397-590, gnl|oryCun1|scaffold_200074 (4259-4122) | |
| 397-590, gnl|panTro1|chr11 (51989260-51989140) | |
| 397-590, gnl|rheMac2|chr15 (77174910-77174773) | |
| 397-590, gnl|rn3|chr1 (228415433-228415570) | |
| 397-590, gnl|tetNig1|chr12 (8441365-8441494) | |
| 397-590, gnl|xenTro1|scaffold_535 (239689-239553) | |
| 1313-1500, gnl|bosTau2|chr8 (20623393-20623581) | |
| 1313-1500, gnl|canFam2|chr1 (91892510-91892339) | |
| 1313-1500, gnl|danRer3|chr8 (24349593-24349410) | |
| 1313-1500, gnl|echTel1|scaffold_122582 (594-434) | |
| 1313-1500, gnl|galGal2|chrZ (10799994-10800166) | |
| 1313-1500, gnl|hg17|chr9 (68374014-68374184) | |
| 1313-1500, gnl|Hg17|chr9 (68374034-68374222) | |
| 1313-1500, gnl|loxAfr1|scaffold_392 (102754-102934) | |
| 1313-1500, gnl|mm7|chr19 (24384596-24384440) | |
| 1313-1500, gnl|Mm7|chr19 (24384566-24384400) | |
| 1313-1500, gnl|monDom2|scaffold_17 (21677528-21677358) | |
| 1313-1500, gnl|oryCun1|scaffold_194270 (38600-38769) | |
| 1313-1500, gnl|panTro1|chr11 (52148403-52148573) | |
| 1313-1500, gnl|rheMac2|chr15 (77317644-77317814) | |
| 1313-1500, gnl|rn3|chr1 (228271607-228271451) |
| Aligned organism(s): 37 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 94-272, gnl|bosTau2|chr8 (21634893-21634715) | |
| 94-272, gnl|Hg17|chr9 (68228846-68229014) | |
| 94-272, gnl|Mm7|chr19 (24524448-24524281) | |
| 397-590, gnl|bosTau2|chr8 (21624878-21624685) | |
| 397-590, gnl|canFam2|chr1 (92047036-92047173) | |
| 397-590, gnl|danRer3|chr8 (24379345-24379476) | |
| 397-590, gnl|dasNov1|scaffold_126392 (1803-1666) | |
| 397-590, gnl|echTel1|scaffold_280991 (49340-49477) | |
| 397-590, gnl|fr1|chrUn (22222739-22222610) | |
| 397-590, gnl|galGal2|chrZ (10751102-10750971) | |
| 397-590, gnl|hg17|chr9 (66923175-66923312) | |
| 397-590, gnl|Hg17|chr9 (68236002-68236195) | |
| 397-590, gnl|loxAfr1|scaffold_26786 (21377-21246) | |
| 397-590, gnl|mm7|chr19 (24516388-24516525) | |
| 397-590, gnl|Mm7|chr19 (24516592-24516399) | |
| 397-590, gnl|monDom2|scaffold_17 (21860439-21860576) | |
| 397-590, gnl|oryCun1|scaffold_200074 (4259-4122) | |
| 397-590, gnl|panTro1|chr11 (51989260-51989140) | |
| 397-590, gnl|rheMac2|chr15 (77174910-77174773) | |
| 397-590, gnl|rn3|chr1 (228415433-228415570) | |
| 397-590, gnl|tetNig1|chr12 (8441365-8441494) | |
| 397-590, gnl|xenTro1|scaffold_535 (239689-239553) | |
| 1313-1500, gnl|bosTau2|chr8 (20623393-20623581) | |
| 1313-1500, gnl|canFam2|chr1 (91892510-91892339) | |
| 1313-1500, gnl|danRer3|chr8 (24349593-24349410) | |
| 1313-1500, gnl|echTel1|scaffold_122582 (594-434) | |
| 1313-1500, gnl|galGal2|chrZ (10799994-10800166) | |
| 1313-1500, gnl|hg17|chr9 (68374014-68374184) | |
| 1313-1500, gnl|Hg17|chr9 (68374034-68374222) | |
| 1313-1500, gnl|loxAfr1|scaffold_392 (102754-102934) | |
| 1313-1500, gnl|mm7|chr19 (24384596-24384440) | |
| 1313-1500, gnl|Mm7|chr19 (24384566-24384400) | |
| 1313-1500, gnl|monDom2|scaffold_17 (21677528-21677358) | |
| 1313-1500, gnl|oryCun1|scaffold_194270 (38600-38769) | |
| 1313-1500, gnl|panTro1|chr11 (52148403-52148573) | |
| 1313-1500, gnl|rheMac2|chr15 (77317644-77317814) | |
| 1313-1500, gnl|rn3|chr1 (228271607-228271451) |
| Expressed library(ies): 8 entry(ies) | More info |
| Expressed library(ies): 8 entry(ies) | Help | Less info |
| ese (0.379507) | |
| cly (0.241284) | |
| fli (0.202881) | |
| cut (0.169924) | |
| nje (0.16592) | |
| bla (0.124347) | |
| eep (0.122564) | |
| med (0.116252) |
| Expressed library(ies): 8 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| ese (0.379507) | |
| cly (0.241284) | |
| fli (0.202881) | |
| cut (0.169924) | |
| nje (0.16592) | |
| bla (0.124347) | |
| eep (0.122564) | |
| med (0.116252) |