Ss1.1-Pig4-TMW8040K20.3
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| GTCCCACGGGGATGGCCTCCCGCAGCAGGCGCCGCCTCCCCCGTCCCAGCTGCAGGGCCT CAAGCATTTTCTGCAGCAGCTGCTGGAGACAGCGCCCCAGAGCAACGAGACTCCCTCTGT GGACCCGCTGCCCGCTAAGTCTGGTCCTCTGACTGTCTCATCTTGGGAGGAAGCCCCTCA GGTGCCACGCCTCCCACCCCCCGTGCATAAAACTAAAGTGCCCTTAGCCATGGCATCCAG CCTTTTCCGGGTCCATGAGCTTCCTTCAGCCCGTTCACAGGGCGGTGGGCCCAGCGGGGG CTCCCCGGAGAGAGGTGGAGATGGGCTCGCGTCCTCGAGGCAGCTGATGGAGGTGTCTCA GCTGCTACGACTCTACCAGGCGCGGGGCTGGGGGGCGCTGCCCGCGGAGGATCTGCTGCT CTACCTGAAGAGGCTGGAGCACAGCGGGACTGACAGCCGAGGGGATAATGTCCCCAGAAG CAACACAGACTCCCGCTTGGGTGAGATCCCCCGGAAAGAGATCCCCTCCCAGGCTCTCCC TCGCCGCCTCGCCACAGCCCCTAAGACCGAGAGGCCTCCCGCTCGGAAGAAAAGTGGGCA CCCTGCCCCCGGTAGCGTGAGGAGTCGGGGGGGAATCTGGAGATAAGCCCCTTGCCTTTA TTTTCTTTGGTCTCTTCTTATCATTATTATTATTGTTATTTTAATAAATGCTCAGTAGTC |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| GTCCCACGGGGATGGCCTCCCGCAGCAGGCGCCGCCTCCCCCGTCCCAGCTGCAGGGCCT CAAGCATTTTCTGCAGCAGCTGCTGGAGACAGCGCCCCAGAGCAACGAGACTCCCTCTGT GGACCCGCTGCCCGCTAAGTCTGGTCCTCTGACTGTCTCATCTTGGGAGGAAGCCCCTCA GGTGCCACGCCTCCCACCCCCCGTGCATAAAACTAAAGTGCCCTTAGCCATGGCATCCAG CCTTTTCCGGGTCCATGAGCTTCCTTCAGCCCGTTCACAGGGCGGTGGGCCCAGCGGGGG CTCCCCGGAGAGAGGTGGAGATGGGCTCGCGTCCTCGAGGCAGCTGATGGAGGTGTCTCA GCTGCTACGACTCTACCAGGCGCGGGGCTGGGGGGCGCTGCCCGCGGAGGATCTGCTGCT CTACCTGAAGAGGCTGGAGCACAGCGGGACTGACAGCCGAGGGGATAATGTCCCCAGAAG CAACACAGACTCCCGCTTGGGTGAGATCCCCCGGAAAGAGATCCCCTCCCAGGCTCTCCC TCGCCGCCTCGCCACAGCCCCTAAGACCGAGAGGCCTCCCGCTCGGAAGAAAAGTGGGCA CCCTGCCCCCGGTAGCGTGAGGAGTCGGGGGGGAATCTGGAGATAAGCCCCTTGCCTTTA TTTTCTTTGGTCTCTTCTTATCATTATTATTATTGTTATTTTAATAAATGCTCAGTAGTC |
| Predicted RNA structure(s): 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
| 519-709, + strand, RNAz p=0.912886 |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 519-709, + strand, RNAz p=0.912886 |
| Homologous human UTR: 1 entry(ies) | More info |
| Homologous human UTR: 1 entry(ies) | Help | Less info |
Human gene identifier and UTR site,
human gene reading direction
human gene reading direction
| 3' of AK074847, + |
| Aligned organism(s): 27 entry(ies) | More info |
| Aligned organism(s): 27 entry(ies) | Help | Less info |
| 143-316, gnl|bosTau2|chr19 (15267873-15267700) | |
| 143-316, gnl|canFam2|chr5 (35804173-35804909) | |
| 143-316, gnl|dasNov1|scaffold_12367 (31293-32038) | |
| 143-316, gnl|echTel1|scaffold_276064 (3538-2854) | |
| 143-316, gnl|hg17|chr17 (7792140-7792863) | |
| 143-316, gnl|Hg17|chr17 (7792199-7792372) | |
| 143-316, gnl|loxAfr1|scaffold_37999 (5466-4735) | |
| 143-316, gnl|mm7|chr11 (69384902-69384244) | |
| 143-316, gnl|Mm7|chr11 (69384839-69384666) | |
| 143-316, gnl|monDom2|scaffold_66 (5198773-5199468) | |
| 143-316, gnl|oryCun1|scaffold_176224 (40511-41169) | |
| 143-316, gnl|panTro1|chr19_random (43946699-43945973) | |
| 143-316, gnl|rheMac2|chr16 (7699249-7699975) | |
| 143-316, gnl|rn3|chr10 (56110730-56110095) | |
| 519-709, gnl|bosTau2|chr19 (15266656-15266469) | |
| 519-709, gnl|canFam2|chr5 (35805293-35805631) | |
| 519-709, gnl|echTel1|scaffold_276064 (706-346) | |
| 519-709, gnl|hg17|chr17 (7793276-7793658) | |
| 519-709, gnl|Hg17|chr17 (7793426-7793606) | |
| 519-709, gnl|loxAfr1|scaffold_37999 (3342-2967) | |
| 519-709, gnl|mm7|chr11 (69381751-69381365) | |
| 519-709, gnl|Mm7|chr11 (69381566-69381407) | |
| 519-709, gnl|monDom2|scaffold_66 (5199860-5200250) | |
| 519-709, gnl|oryCun1|scaffold_176224 (42186-42534) | |
| 519-709, gnl|panTro1|chr19_random (43945560-43945178) | |
| 519-709, gnl|rheMac2|chr16 (7700388-7700772) | |
| 519-709, gnl|rn3|chr10 (56108487-56108053) |
| Aligned organism(s): 27 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 143-316, gnl|bosTau2|chr19 (15267873-15267700) | |
| 143-316, gnl|canFam2|chr5 (35804173-35804909) | |
| 143-316, gnl|dasNov1|scaffold_12367 (31293-32038) | |
| 143-316, gnl|echTel1|scaffold_276064 (3538-2854) | |
| 143-316, gnl|hg17|chr17 (7792140-7792863) | |
| 143-316, gnl|Hg17|chr17 (7792199-7792372) | |
| 143-316, gnl|loxAfr1|scaffold_37999 (5466-4735) | |
| 143-316, gnl|mm7|chr11 (69384902-69384244) | |
| 143-316, gnl|Mm7|chr11 (69384839-69384666) | |
| 143-316, gnl|monDom2|scaffold_66 (5198773-5199468) | |
| 143-316, gnl|oryCun1|scaffold_176224 (40511-41169) | |
| 143-316, gnl|panTro1|chr19_random (43946699-43945973) | |
| 143-316, gnl|rheMac2|chr16 (7699249-7699975) | |
| 143-316, gnl|rn3|chr10 (56110730-56110095) | |
| 519-709, gnl|bosTau2|chr19 (15266656-15266469) | |
| 519-709, gnl|canFam2|chr5 (35805293-35805631) | |
| 519-709, gnl|echTel1|scaffold_276064 (706-346) | |
| 519-709, gnl|hg17|chr17 (7793276-7793658) | |
| 519-709, gnl|Hg17|chr17 (7793426-7793606) | |
| 519-709, gnl|loxAfr1|scaffold_37999 (3342-2967) | |
| 519-709, gnl|mm7|chr11 (69381751-69381365) | |
| 519-709, gnl|Mm7|chr11 (69381566-69381407) | |
| 519-709, gnl|monDom2|scaffold_66 (5199860-5200250) | |
| 519-709, gnl|oryCun1|scaffold_176224 (42186-42534) | |
| 519-709, gnl|panTro1|chr19_random (43945560-43945178) | |
| 519-709, gnl|rheMac2|chr16 (7700388-7700772) | |
| 519-709, gnl|rn3|chr10 (56108487-56108053) |
| Expressed library(ies): 2 entry(ies) | More info |
| Expressed library(ies): 2 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| nmm (0.132802) | |
| med (0.116252) |