Ss1.1-Pig4-TMW8040K22.3
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| TTTTTTTTTTTTTTTTTTTTTTTTGCTGATGACACGTTTATTGAGCAGCCTGCCACCACC CCACTTCCAACCACGGTCCTGCACTGAGATCTGTCCTCAAGTGTGCCACCCCCTTGCCGC CCAGACTCTGGGGCAGTCCGGCCCCCTGGGCACAAGGTCCTGGCTGTGAGACAGGTCACT TGGCCAGCTCCTCTGCCACTGCTTTGCGCATCTTGTCCTTGAGGTAGGCGCTCTTCTGCC ACTCAGACTTGAGTTCCAGCCACTCGTAGTACGGGACGTCGACCAGCAGGAAGCCAGCGG CCAGCAGGTGGCGCCGGGCCAGCACAAAGCGCCCCAGCAAGTCTTTGCTTCGGCTGTTGA AGTTGGGGAACTCCCAGCACAGGAAGGCCAGCCTCTTGGCCCCAGCGGGCAGCGGCTGGC TCCCAGAGGGCTGGGCGAGATGAGGAGCCACAAAGTCCCTCAGGGGCAGGAGCTGGCTGT CGGCGTCCAGCAGGACCTCAGCATCCAGAATCCAGCCATATCGTGTGGCCACCAAGAAGC TGCCCTTGTTGGCGCTCCCCAGCAGTCCCTTCAGTGTCTCCTGCAGCTCCTTCTGCAAGG GGGTCACCTTCTTGTCAAGGGCGGAGGGCCTGGGGACCAAGGCTGAGGATGGCAAGTGGG GGCCTGTGTACTCGGGGTGCTCCAGCTGGGCAGTGGCGTTGATATGGAGCAGCTTCTGGA AGGTGCTTTGATCCTTTGGGGACTTGTCACCTAGAAACTGGCCGTGAAGTTCAGGGCGGA GCACAGCCTGCAGCTCGGCCTCCCTGGCCTGCTGCAGCACACACAGGGACCACACCACGT CCACCTGCAGGGCTGGCTCCAGGCCTGCCAGCTGCGACCCCAGCTTCTCATGCACCAGGC TGAAGAACTGGTCCTCCCGTTCTGGCCGGAAGTTCACACGGGCGAAAGCCAGGAGCATGT TGCACAGGTGTGGCAGAGCGATGCTCTGGGCTCTGTCCAGGACGTGCTGGGCAAAGGCCT CAAACAGGGGCAGGCTGAGCCACTTAAGGAAGGCAAAGGACTTGGTGCAGCGGGCCACCT CGCTGGAAGTCAGGCTAGGCGTGTGGGGCAGCAGGTCAGCAGCCAGGCGCTGGAACACCT GGGTCTGGTGGAAGCCGAGTTTGCCATAGGCATAGGCCAGGTCCAGGAGGATGCTTTTCG TCAGGGTGAAGGGCTTCTGGACCAGGTGGTAAGAGACAGCCCGCAGCAAGGGCACCGAGC GCCGGTTCTGAGCTGCCAACATCACCAGTACCTTCC |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| TTTTTTTTTTTTTTTTTTTTTTTTGCTGATGACACGTTTATTGAGCAGCCTGCCACCACC CCACTTCCAACCACGGTCCTGCACTGAGATCTGTCCTCAAGTGTGCCACCCCCTTGCCGC CCAGACTCTGGGGCAGTCCGGCCCCCTGGGCACAAGGTCCTGGCTGTGAGACAGGTCACT TGGCCAGCTCCTCTGCCACTGCTTTGCGCATCTTGTCCTTGAGGTAGGCGCTCTTCTGCC ACTCAGACTTGAGTTCCAGCCACTCGTAGTACGGGACGTCGACCAGCAGGAAGCCAGCGG CCAGCAGGTGGCGCCGGGCCAGCACAAAGCGCCCCAGCAAGTCTTTGCTTCGGCTGTTGA AGTTGGGGAACTCCCAGCACAGGAAGGCCAGCCTCTTGGCCCCAGCGGGCAGCGGCTGGC TCCCAGAGGGCTGGGCGAGATGAGGAGCCACAAAGTCCCTCAGGGGCAGGAGCTGGCTGT CGGCGTCCAGCAGGACCTCAGCATCCAGAATCCAGCCATATCGTGTGGCCACCAAGAAGC TGCCCTTGTTGGCGCTCCCCAGCAGTCCCTTCAGTGTCTCCTGCAGCTCCTTCTGCAAGG GGGTCACCTTCTTGTCAAGGGCGGAGGGCCTGGGGACCAAGGCTGAGGATGGCAAGTGGG GGCCTGTGTACTCGGGGTGCTCCAGCTGGGCAGTGGCGTTGATATGGAGCAGCTTCTGGA AGGTGCTTTGATCCTTTGGGGACTTGTCACCTAGAAACTGGCCGTGAAGTTCAGGGCGGA GCACAGCCTGCAGCTCGGCCTCCCTGGCCTGCTGCAGCACACACAGGGACCACACCACGT CCACCTGCAGGGCTGGCTCCAGGCCTGCCAGCTGCGACCCCAGCTTCTCATGCACCAGGC TGAAGAACTGGTCCTCCCGTTCTGGCCGGAAGTTCACACGGGCGAAAGCCAGGAGCATGT TGCACAGGTGTGGCAGAGCGATGCTCTGGGCTCTGTCCAGGACGTGCTGGGCAAAGGCCT CAAACAGGGGCAGGCTGAGCCACTTAAGGAAGGCAAAGGACTTGGTGCAGCGGGCCACCT CGCTGGAAGTCAGGCTAGGCGTGTGGGGCAGCAGGTCAGCAGCCAGGCGCTGGAACACCT GGGTCTGGTGGAAGCCGAGTTTGCCATAGGCATAGGCCAGGTCCAGGAGGATGCTTTTCG TCAGGGTGAAGGGCTTCTGGACCAGGTGGTAAGAGACAGCCCGCAGCAAGGGCACCGAGC GCCGGTTCTGAGCTGCCAACATCACCAGTACCTTCC |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
| 541-660, + strand, RNAz p=0.506757 |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 541-660, + strand, RNAz p=0.506757 |
| Aligned organism(s): 23 entry(ies) | More info |
| Aligned organism(s): 23 entry(ies) | Help | Less info |
| 53-282, gnl|bosTau2|chr4 (43271082-43271327) | |
| 53-282, gnl|Hg17|chr7 (44913049-44913270) | |
| 53-282, gnl|Mm7|chr11 (6568484-6568723) | |
| 502-753, gnl|bosTau2|chr4 (43272396-43272647) | |
| 502-753, gnl|canFam2|chrUn (34995218-34995484) | |
| 502-753, gnl|dasNov1|scaffold_9871 (7395-7174) | |
| 502-753, gnl|echTel1|scaffold_300293 (16297-16568) | |
| 502-753, gnl|fr1|chrUn (166469684-166469917) | |
| 502-753, gnl|galGal2|chr2 (3499259-3498995) | |
| 502-753, gnl|hg17|chr7 (44914660-44914930) | |
| 502-753, gnl|Hg17|chr7 (44914661-44914912) | |
| 502-753, gnl|loxAfr1|scaffold_15968 (47502-47772) | |
| 502-753, gnl|mm7|chr11 (6569963-6570224) | |
| 502-753, gnl|Mm7|chr11 (6569964-6570215) | |
| 502-753, gnl|monDom2|scaffold_5 (69112731-69112476) | |
| 502-753, gnl|oryCun1|scaffold_133717 (2361-2093) | |
| 502-753, gnl|panTro1|chr6 (46414462-46414732) | |
| 502-753, gnl|rheMac2|chr3 (81245731-81245464) | |
| 502-753, gnl|rn3|chr14 (87392790-87393049) | |
| 502-753, gnl|xenTro1|scaffold_298 (5497-5224) | |
| 1007-1170, gnl|bosTau2|chr28 (30304242-30304079) | |
| 1007-1170, gnl|Hg17|chr7 (44916938-44917101) | |
| 1007-1170, gnl|Mm7|chr11 (6571560-6571723) |
| Aligned organism(s): 23 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 53-282, gnl|bosTau2|chr4 (43271082-43271327) | |
| 53-282, gnl|Hg17|chr7 (44913049-44913270) | |
| 53-282, gnl|Mm7|chr11 (6568484-6568723) | |
| 502-753, gnl|bosTau2|chr4 (43272396-43272647) | |
| 502-753, gnl|canFam2|chrUn (34995218-34995484) | |
| 502-753, gnl|dasNov1|scaffold_9871 (7395-7174) | |
| 502-753, gnl|echTel1|scaffold_300293 (16297-16568) | |
| 502-753, gnl|fr1|chrUn (166469684-166469917) | |
| 502-753, gnl|galGal2|chr2 (3499259-3498995) | |
| 502-753, gnl|hg17|chr7 (44914660-44914930) | |
| 502-753, gnl|Hg17|chr7 (44914661-44914912) | |
| 502-753, gnl|loxAfr1|scaffold_15968 (47502-47772) | |
| 502-753, gnl|mm7|chr11 (6569963-6570224) | |
| 502-753, gnl|Mm7|chr11 (6569964-6570215) | |
| 502-753, gnl|monDom2|scaffold_5 (69112731-69112476) | |
| 502-753, gnl|oryCun1|scaffold_133717 (2361-2093) | |
| 502-753, gnl|panTro1|chr6 (46414462-46414732) | |
| 502-753, gnl|rheMac2|chr3 (81245731-81245464) | |
| 502-753, gnl|rn3|chr14 (87392790-87393049) | |
| 502-753, gnl|xenTro1|scaffold_298 (5497-5224) | |
| 1007-1170, gnl|bosTau2|chr28 (30304242-30304079) | |
| 1007-1170, gnl|Hg17|chr7 (44916938-44917101) | |
| 1007-1170, gnl|Mm7|chr11 (6571560-6571723) |
| Expressed library(ies): 13 entry(ies) | More info |
| Expressed library(ies): 13 entry(ies) | Help | Less info |
| nms (0.427716) | |
| cga (0.279096) | |
| fce (0.271592) | |
| fcc (0.197785) | |
| col (0.195008) | |
| ton (0.1755) | |
| eye (0.170503) | |
| nco (0.161734) | |
| hyp (0.142837) | |
| nmm (0.132802) | |
| ute (0.132784) | |
| cov (0.132153) | |
| cly (0.120642) |
| Expressed library(ies): 13 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| nms (0.427716) | |
| cga (0.279096) | |
| fce (0.271592) | |
| fcc (0.197785) | |
| col (0.195008) | |
| ton (0.1755) | |
| eye (0.170503) | |
| nco (0.161734) | |
| hyp (0.142837) | |
| nmm (0.132802) | |
| ute (0.132784) | |
| cov (0.132153) | |
| cly (0.120642) |