Non-Coding RNA Search

Ss1.1-Pig4-TMW8040L01.5

Sequence:


               
               AAGTGGGGAGGGGAGCCCAGACCCTCCCATCGGTGCCGGTTCTGCGTTTTTTTCAGTGCT
GACTGGACTGTGTGCTTCCTGTGCAGTGTCGGCGCCTCTGTCTGGTTGTTTACCTGTTCC
TGTTCGTGCTTGTAATCTCACTTTTGTTTCTTTGTATAACTTGTGATTCCAGGGCTGTTT
GTCAACAGTGTACAAAAGAATCGTGCCTCTCCCAAGTTCAGTGTGACTATCCTCTGGGTG
GTTTGATAGTATTTTTTAAAATATTACGTAATGTGGAGTGACATAGGACTGGGGGTGGAC
AGGGGGAGAAACAAAGACTGCAAGAGTAAATCCCAGCTCCTCTCCTCCCCCCAGACTCAG
ATGAACCACCCTCCACCCGCCAACCCCCGCTGACCTCCATCCGTGTGCTTGGGATCTTCA
ATGAACTGTGTGCTTTTTGCTTCCTTTCTGCATGACTAGGGTAAATAGGTAGAAGTTTAA
GAGATTCTCAAGGTCTAATTTCCATAGCTTTGTCCGTTGAATCTGGAGGCACCTGCCTTT
TAATCCATTTGCTAAAATTTGGTGCATTTGAGTTTATGTGACTAGGCTGGCTGTGCCTGT
AGAGCTCTTGTGTTTCTAGTGATGATGTGAAATACAAAGAACAAGCTATTTCCAGGAATG
TGTTCTGTATCTGACATCCCAGTTTACCCTTTATTATTAACTAATTAGCTATGAGATTAG
ACAAAAAAAAAAAAAAAAAAAAAAGGGGGGGGCCGTTTTAAAATTTTCCTTGGGGGGGCC
AGTTAACCCGTCCCCCCTTTTTTTTTGAAAAAGGGG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               AAGTGGGGAGGGGAGCCCAGACCCTCCCATCGGTGCCGGTTCTGCGTTTTTTTCAGTGCT
GACTGGACTGTGTGCTTCCTGTGCAGTGTCGGCGCCTCTGTCTGGTTGTTTACCTGTTCC
TGTTCGTGCTTGTAATCTCACTTTTGTTTCTTTGTATAACTTGTGATTCCAGGGCTGTTT
GTCAACAGTGTACAAAAGAATCGTGCCTCTCCCAAGTTCAGTGTGACTATCCTCTGGGTG
GTTTGATAGTATTTTTTAAAATATTACGTAATGTGGAGTGACATAGGACTGGGGGTGGAC
AGGGGGAGAAACAAAGACTGCAAGAGTAAATCCCAGCTCCTCTCCTCCCCCCAGACTCAG
ATGAACCACCCTCCACCCGCCAACCCCCGCTGACCTCCATCCGTGTGCTTGGGATCTTCA
ATGAACTGTGTGCTTTTTGCTTCCTTTCTGCATGACTAGGGTAAATAGGTAGAAGTTTAA
GAGATTCTCAAGGTCTAATTTCCATAGCTTTGTCCGTTGAATCTGGAGGCACCTGCCTTT
TAATCCATTTGCTAAAATTTGGTGCATTTGAGTTTATGTGACTAGGCTGGCTGTGCCTGT
AGAGCTCTTGTGTTTCTAGTGATGATGTGAAATACAAAGAACAAGCTATTTCCAGGAATG
TGTTCTGTATCTGACATCCCAGTTTACCCTTTATTATTAACTAATTAGCTATGAGATTAG
ACAAAAAAAAAAAAAAAAAAAAAAGGGGGGGGCCGTTTTAAAATTTTCCTTGGGGGGGCC
AGTTAACCCGTCCCCCCTTTTTTTTTGAAAAAGGGG

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               271-372, - strand, RNAz p=0.891845

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               271-372, - strand, RNAz p=0.891845

Predicted microRNA(s): 1 entry(ies)

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Predicted microRNA(s): 1 entry(ies)

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               282-390, + strand, RNAmicro p=0.931213

Predicted microRNA(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted microRNA,
PigEST conread reading direction of prediction,
miRNA classificator p of RNAmicro


               
               282-390, + strand, RNAmicro p=0.931213

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               1-732, gnl|bosTau2|chr22 (45665219-45665971)
               

               
               1-732, gnl|Hg17|chr3 (12199999-12200724)
               

               
               1-732, gnl|Mm7|chr6 (115300007-115300705)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-732, gnl|bosTau2|chr22 (45665219-45665971)
               

               
               1-732, gnl|Hg17|chr3 (12199999-12200724)
               

               
               1-732, gnl|Mm7|chr6 (115300007-115300705)

Expressed library(ies): 2 entry(ies)

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Expressed library(ies): 2 entry(ies)

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               fce (0.271592)
               

               
               fhi (0.169578)

Expressed library(ies): 2 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               fce (0.271592)
               

               
               fhi (0.169578)

	1-732, gnl\|bosTau2\|chr22 (45665219-45665971)
	1-732, gnl\|Hg17\|chr3 (12199999-12200724)
	1-732, gnl\|Mm7\|chr6 (115300007-115300705)