Non-Coding RNA Search

Ss1.1-Pig4-TMW8040L05.3

Sequence:


               
               TTTTTCGTGTCGACAGAGTGTAAACAATTACAAGAGAAAAAAAAAGGGGGGGTGGAATAA
GCCTTAGGCTAGCCAGAGTGATTCAGTGATTCCACTCAAAGCTGTACCCCGGTACTTTGG
GTGAACCATGTATCAGGTTTTGAGAAAGAACAAAAGGAAAGAGGGTCCTGAAGTGAAGTT
AAGCATCATTGGAAGCATATGGGTTAAAGAAAGTGATTTGTTATTGAAAGCCTGTGCGGA
AGTTCTTTTAGGGTATCTATTGTGAATTCTGCGGGGCAAAAGATGGAATGTAACCCACTG
TGCTAGCAAGCATCCTGATTCTGGGCAGTCTCCATTTTATGGGTTTTGCTCTCCTTTCTT
AAGGATTTAACAGTAAGCCCCTGGCTGTCAATCAAATAAGGCAACTGGAAATGGCATTTA
TGTTTTCACGAGGGACAGGCTTAGAAGTGTGACCGTAAAGTCCCATCTTGTACAATCTGC
TCATTTGCATGATCTAGTTTCCTCTGTAATGATAACGCCACAAGCTGGATAAGAAGCTGA
GCATTTGGGTTAAAAAATAAATGTTCTTGACTCTGTGCTTGTATCAAAAGTCTAAATTTT
GTCTAATGGTATCTGCAGTCCTGAGACTCTGAGAACTGGAAAACTGAAGGGAAAAAGAAA
ATTGTTTTTAATCCCAAACACCTTGAAATCAGAGTGAAACTATTTTGTGTACTTTGTGTT
TTTAAAATAATGATTCTGTAGATCACTGTGGTATTTCGATTTTGTTTAGTTTTAATTGAT
AATGTTTGCTCTTAAAACTGTTGGAAAGCAGGATGAAGCCCGAGCCAGTGGAAAAGCTTG
TTACAGAAAAAATATCGTGTGTTATTTGCTGTGGTGTGCATGGTTTGCAGAGATTAAGTG
CATTTTCTCTGTCTATACTGATTTATTGTATATAGGGGATATTATAAATATACATTTTGA
TCATCCTGTAAATCCCATGATTTCAACTGTAAACATCTGTCCAATGGTGTAGCTTTACCA
GCTATTCACTGATTTTGTGTAATTTAACAATAGATATGAAATAAAGTTTAAATTCCGAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TTTTTCGTGTCGACAGAGTGTAAACAATTACAAGAGAAAAAAAAAGGGGGGGTGGAATAA
GCCTTAGGCTAGCCAGAGTGATTCAGTGATTCCACTCAAAGCTGTACCCCGGTACTTTGG
GTGAACCATGTATCAGGTTTTGAGAAAGAACAAAAGGAAAGAGGGTCCTGAAGTGAAGTT
AAGCATCATTGGAAGCATATGGGTTAAAGAAAGTGATTTGTTATTGAAAGCCTGTGCGGA
AGTTCTTTTAGGGTATCTATTGTGAATTCTGCGGGGCAAAAGATGGAATGTAACCCACTG
TGCTAGCAAGCATCCTGATTCTGGGCAGTCTCCATTTTATGGGTTTTGCTCTCCTTTCTT
AAGGATTTAACAGTAAGCCCCTGGCTGTCAATCAAATAAGGCAACTGGAAATGGCATTTA
TGTTTTCACGAGGGACAGGCTTAGAAGTGTGACCGTAAAGTCCCATCTTGTACAATCTGC
TCATTTGCATGATCTAGTTTCCTCTGTAATGATAACGCCACAAGCTGGATAAGAAGCTGA
GCATTTGGGTTAAAAAATAAATGTTCTTGACTCTGTGCTTGTATCAAAAGTCTAAATTTT
GTCTAATGGTATCTGCAGTCCTGAGACTCTGAGAACTGGAAAACTGAAGGGAAAAAGAAA
ATTGTTTTTAATCCCAAACACCTTGAAATCAGAGTGAAACTATTTTGTGTACTTTGTGTT
TTTAAAATAATGATTCTGTAGATCACTGTGGTATTTCGATTTTGTTTAGTTTTAATTGAT
AATGTTTGCTCTTAAAACTGTTGGAAAGCAGGATGAAGCCCGAGCCAGTGGAAAAGCTTG
TTACAGAAAAAATATCGTGTGTTATTTGCTGTGGTGTGCATGGTTTGCAGAGATTAAGTG
CATTTTCTCTGTCTATACTGATTTATTGTATATAGGGGATATTATAAATATACATTTTGA
TCATCCTGTAAATCCCATGATTTCAACTGTAAACATCTGTCCAATGGTGTAGCTTTACCA
GCTATTCACTGATTTTGTGTAATTTAACAATAGATATGAAATAAAGTTTAAATTCCGAAA

Aligned organism(s): 3 entry(ies)

More info

Aligned organism(s): 3 entry(ies)

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               1-1074, gnl|bosTau2|chr17 (9958391-9957308)
               

               
               1-1074, gnl|Hg17|chrX (131486641-131485581)
               

               
               1-1074, gnl|Mm7|chrX (46480584-46479467)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-1074, gnl|bosTau2|chr17 (9958391-9957308)
               

               
               1-1074, gnl|Hg17|chrX (131486641-131485581)
               

               
               1-1074, gnl|Mm7|chrX (46480584-46479467)

Expressed library(ies): 3 entry(ies)

More info

Expressed library(ies): 3 entry(ies)

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               ova (0.387397)
               

               
               fce (0.271592)
               

               
               ste (0.135208)

Expressed library(ies): 3 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               ova (0.387397)
               

               
               fce (0.271592)
               

               
               ste (0.135208)

	1-1074, gnl\|bosTau2\|chr17 (9958391-9957308)
	1-1074, gnl\|Hg17\|chrX (131486641-131485581)
	1-1074, gnl\|Mm7\|chrX (46480584-46479467)