Non-Coding RNA Search

Ss1.1-Pig4-TMW8040L06.3

Sequence:


               
               CGCCTGCCCTGAGGAGCCGTGAGTGAGTTTCGGGGAAGCCTGGGCTCCTACAGGTCTGCA
TGTGCGTCCTGGCCCCCCAGCTCCCTCACACCCTGACCGTGACCTCTGCGCCTGATTTCT
CTTCCCAGGATTGTGGGGCAGATTAAGCGAGACCCTGGAAGTAAAGTGCTTAGGACAGCC
ACCCCCGCCCCCAACACAGGGAGCACGTCCTGAACCCTGTGTGGCTTCTCCCTGGAGTCA
CCGCATCCCAAGGGTCAAGGTCACAGGGGGACCCCTGTGCCCCCAGCTCAGAGGAGCGGC
TTCATGCTGCCTTGTGTCTCCCGCCCAGGTACACGTCCTCGGTCAAGTACGACTCGGAGC
GGCACTTCATTGACGACGTCCACCTGCCGCTGGGCCTGGCCGTGGCCTCCTGCAGCCAGA
CCATCACCTGCATCCCCAGGTGCACGTGGCGCAACTACAAGGCCGAGGTGCACTTCGAGC
CCCGGCACAAGCCCAGCCGGTTCCTCAGCACCACCATCGTCTACCCCAAGTACCCCAAGA
CCGTCTACACCACCACCCTGGATTACAACTGCCGCAAGACCCTGAGGAGGTTCCTGTCCA
GCGTGGAGCTGGAAGCCGCGGAGTTCGCGGGCGGCGACTACCTGTCGGATGAGAGCTGAC
TGGGGCAGGCTGGGGGCTGGACCGGCCGTCCCGTCCTGGTCGGCTTGGGCCAGGCTGCCC
TTGCTGGTCATGCCAGCCCCGGGAGTGTCTGACCCAGAGATTCGTCTAAGCCCAGAAGAA
AAAACATCACAGTATCTTCCAATGAGAAAGAGATTTTGGTTTTTACCTTTTTTTTTTTTT
TTTCCCTTCAAATTTTGTTATTTTTGTTTGTTTGTTTTGGCCGCCCCGTGGCATGTGGAG
TTCCCGGGCCAGGGATCAGATCTGAGCCACAGTTGTGACCTACACGGCAGCTGGGGCAAC
GCCAGATCCTTAACCCACTCTGCCGGGCTGGGGGGTCAAATCTGCATCCCAGTGCTCGGA
GGCAGCACCGATCCTGCTGCACCACAGCGGGAGCTCTCGCATTGTTTTTCGAAGGGGTGT
GTTTCCTCGTCTGCTGCTGCATAGCTTCCCCAGAGTCCCAATTTCACGAGGAAGTAAAAG
GATAGCTAGAGCCAAAGGAAAAGGGCCCCGATTTGAAATACGGAGGTGGGGGAGCCCTTC
CGTTGGTCAGTTTGTCTGAGGAAGAGCGTGGAACAAAATCTCTGAGATGGAAAAAGTGAA
TTTGAAGAAATTTCAGCCCCGGGTGTCCTCACTGCTGCGAGAGTGGTGCTAATTCAGTGA
GCTGTGACACCCATATGGGTTCAATCTGCAGAGAATTGAGTTCCATTCTGTTTCTTTTCT
TTTTCTTTTTTATTTCCATTTGGATTTCCTGTTAAC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CGCCTGCCCTGAGGAGCCGTGAGTGAGTTTCGGGGAAGCCTGGGCTCCTACAGGTCTGCA
TGTGCGTCCTGGCCCCCCAGCTCCCTCACACCCTGACCGTGACCTCTGCGCCTGATTTCT
CTTCCCAGGATTGTGGGGCAGATTAAGCGAGACCCTGGAAGTAAAGTGCTTAGGACAGCC
ACCCCCGCCCCCAACACAGGGAGCACGTCCTGAACCCTGTGTGGCTTCTCCCTGGAGTCA
CCGCATCCCAAGGGTCAAGGTCACAGGGGGACCCCTGTGCCCCCAGCTCAGAGGAGCGGC
TTCATGCTGCCTTGTGTCTCCCGCCCAGGTACACGTCCTCGGTCAAGTACGACTCGGAGC
GGCACTTCATTGACGACGTCCACCTGCCGCTGGGCCTGGCCGTGGCCTCCTGCAGCCAGA
CCATCACCTGCATCCCCAGGTGCACGTGGCGCAACTACAAGGCCGAGGTGCACTTCGAGC
CCCGGCACAAGCCCAGCCGGTTCCTCAGCACCACCATCGTCTACCCCAAGTACCCCAAGA
CCGTCTACACCACCACCCTGGATTACAACTGCCGCAAGACCCTGAGGAGGTTCCTGTCCA
GCGTGGAGCTGGAAGCCGCGGAGTTCGCGGGCGGCGACTACCTGTCGGATGAGAGCTGAC
TGGGGCAGGCTGGGGGCTGGACCGGCCGTCCCGTCCTGGTCGGCTTGGGCCAGGCTGCCC
TTGCTGGTCATGCCAGCCCCGGGAGTGTCTGACCCAGAGATTCGTCTAAGCCCAGAAGAA
AAAACATCACAGTATCTTCCAATGAGAAAGAGATTTTGGTTTTTACCTTTTTTTTTTTTT
TTTCCCTTCAAATTTTGTTATTTTTGTTTGTTTGTTTTGGCCGCCCCGTGGCATGTGGAG
TTCCCGGGCCAGGGATCAGATCTGAGCCACAGTTGTGACCTACACGGCAGCTGGGGCAAC
GCCAGATCCTTAACCCACTCTGCCGGGCTGGGGGGTCAAATCTGCATCCCAGTGCTCGGA
GGCAGCACCGATCCTGCTGCACCACAGCGGGAGCTCTCGCATTGTTTTTCGAAGGGGTGT
GTTTCCTCGTCTGCTGCTGCATAGCTTCCCCAGAGTCCCAATTTCACGAGGAAGTAAAAG
GATAGCTAGAGCCAAAGGAAAAGGGCCCCGATTTGAAATACGGAGGTGGGGGAGCCCTTC
CGTTGGTCAGTTTGTCTGAGGAAGAGCGTGGAACAAAATCTCTGAGATGGAAAAAGTGAA
TTTGAAGAAATTTCAGCCCCGGGTGTCCTCACTGCTGCGAGAGTGGTGCTAATTCAGTGA
GCTGTGACACCCATATGGGTTCAATCTGCAGAGAATTGAGTTCCATTCTGTTTCTTTTCT
TTTTCTTTTTTATTTCCATTTGGATTTCCTGTTAAC

Coded protein: 1 entry(ies)

More info

Coded protein: 1 entry(ies)

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               gi|33186901|ref|NP_874364.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|33186901|ref|NP_874364.1|

Aligned organism(s): 6 entry(ies)

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Aligned organism(s): 6 entry(ies)

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               56-837, gnl|bosTau2|chr19 (16763829-16764621)
               

               
               56-837, gnl|Hg17|chr17 (293819-292977)
               

               
               56-837, gnl|Mm7|chr11 (76104008-76103265)
               


               
               1063-1416, gnl|bosTau2|chr19 (16764627-16764981)
               

               
               1063-1416, gnl|Hg17|chr17 (292971-292638)
               

               
               1063-1416, gnl|Mm7|chr11 (76103241-76102879)

Aligned organism(s): 6 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               56-837, gnl|bosTau2|chr19 (16763829-16764621)
               

               
               56-837, gnl|Hg17|chr17 (293819-292977)
               

               
               56-837, gnl|Mm7|chr11 (76104008-76103265)
               


               
               1063-1416, gnl|bosTau2|chr19 (16764627-16764981)
               

               
               1063-1416, gnl|Hg17|chr17 (292971-292638)
               

               
               1063-1416, gnl|Mm7|chr11 (76103241-76102879)

Expressed library(ies): 4 entry(ies)

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Expressed library(ies): 4 entry(ies)

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               col (0.195008)
               

               
               fbs (0.175346)
               

               
               che (0.136314)
               

               
               ldo (0.0970026)

Expressed library(ies): 4 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               col (0.195008)
               

               
               fbs (0.175346)
               

               
               che (0.136314)
               

               
               ldo (0.0970026)

	56-837, gnl\|bosTau2\|chr19 (16763829-16764621)
	56-837, gnl\|Hg17\|chr17 (293819-292977)
	56-837, gnl\|Mm7\|chr11 (76104008-76103265)

	1063-1416, gnl\|bosTau2\|chr19 (16764627-16764981)
	1063-1416, gnl\|Hg17\|chr17 (292971-292638)
	1063-1416, gnl\|Mm7\|chr11 (76103241-76102879)