Non-Coding RNA Search

Ss1.1-Pig4-TMW8040L18.3

Sequence:


               
               GGGGCCGGTGGCAGTGGCTGGCGGGAGCGTCCAGCTAGTCAGCTCAGCCGCGGCAGCAGC
CCGCGCAGCCAGGCCTCGGCTGCCGCCCCTGGGCTCCCCCCGCTGCACCCCCTGACAAAG
GCCTACTCGGTGGTGGGCGGGCCGCCCGGGGGGCCGCCTGTCCGGGAGCTGGCCGCAGTC
CCCCCAGAGCTGACGGGCAGCCGCCAGTCCTTCCAGAAGGCCATGGGGAACCCCTGTGAG
TTCTTTGTTGATATCATGTGACCGGGGAGAATGCCCGCAGCTGGTCCTGCTGTCCCTGCA
GGCGGGTGCTGTGCCTGGAGCTGGTGCGCTTGCCTCGGCGGCCCAGCCTGTGCTTAGTGC
CGTGGCGTCTGGGCCCAGACAGAATGGCGGTAGGCGGCAGGCGGGGGCCGAGTAGAGGCC
ATTGGCTGCGGGTGCTGGGGCAGGTCTGACCTGCGCCCCTGGGCGTGTGCCTCAGGGACC
CTCCCTCACCCACAGAGCTGTGCTCAGGGCCTCAGACTGAGCTTAGAGGTGGCCTGGGTC
CCTCCTTCACCTGGTTCACAGGCCCCACCCATCTTGCCCAGGCCGGAGGCCCTCTCGGGA
GTGGGATCAGAGCCCCGAGGGCCCTCTGTAGCTGCCCAGGGCGGGTGTCTAATTTATTTA
TTTATTACCTGGCCTGTGTGCCCTGGGGGCGGTGGCAAGTCAGCTGGCCCCACCCCCAGC
CACCGGAGCAGAGTTTGAGGTCTCCCCACGCCTGCAGGGGCACAGGTCGCCTGCAGGGGC
ACAGGTCGAGTCTGCGAGGGGGTGGGAGGGTTGTGAGGGGGAGTCGGAGGTGGCTGGGGG
GCATAGTCCCGCTGGCAGGAGGGGATGCTGACCCCCAGGGACGAGGGCACAGATGCACAT
AGCTGCTGCGGGTCGGGGCAGAGGCCTTGGCCAGCTCGCCCTTTCACACTGTCCTCGGGT
GGCCGCCACCCCCCACCGCACACGCTACTTCCGTCCCGGCATCTCTGGCCTGCACACGTC
TGCGCTGTAGATACCGTATCGAGTCGGCGCGTCCGTCCAGATAGTCAATAGAGCTGCTTC
TGTGTAAATGCTATTTTAAACACTAAAAAGCATTTAATTTTAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GGGGCCGGTGGCAGTGGCTGGCGGGAGCGTCCAGCTAGTCAGCTCAGCCGCGGCAGCAGC
CCGCGCAGCCAGGCCTCGGCTGCCGCCCCTGGGCTCCCCCCGCTGCACCCCCTGACAAAG
GCCTACTCGGTGGTGGGCGGGCCGCCCGGGGGGCCGCCTGTCCGGGAGCTGGCCGCAGTC
CCCCCAGAGCTGACGGGCAGCCGCCAGTCCTTCCAGAAGGCCATGGGGAACCCCTGTGAG
TTCTTTGTTGATATCATGTGACCGGGGAGAATGCCCGCAGCTGGTCCTGCTGTCCCTGCA
GGCGGGTGCTGTGCCTGGAGCTGGTGCGCTTGCCTCGGCGGCCCAGCCTGTGCTTAGTGC
CGTGGCGTCTGGGCCCAGACAGAATGGCGGTAGGCGGCAGGCGGGGGCCGAGTAGAGGCC
ATTGGCTGCGGGTGCTGGGGCAGGTCTGACCTGCGCCCCTGGGCGTGTGCCTCAGGGACC
CTCCCTCACCCACAGAGCTGTGCTCAGGGCCTCAGACTGAGCTTAGAGGTGGCCTGGGTC
CCTCCTTCACCTGGTTCACAGGCCCCACCCATCTTGCCCAGGCCGGAGGCCCTCTCGGGA
GTGGGATCAGAGCCCCGAGGGCCCTCTGTAGCTGCCCAGGGCGGGTGTCTAATTTATTTA
TTTATTACCTGGCCTGTGTGCCCTGGGGGCGGTGGCAAGTCAGCTGGCCCCACCCCCAGC
CACCGGAGCAGAGTTTGAGGTCTCCCCACGCCTGCAGGGGCACAGGTCGCCTGCAGGGGC
ACAGGTCGAGTCTGCGAGGGGGTGGGAGGGTTGTGAGGGGGAGTCGGAGGTGGCTGGGGG
GCATAGTCCCGCTGGCAGGAGGGGATGCTGACCCCCAGGGACGAGGGCACAGATGCACAT
AGCTGCTGCGGGTCGGGGCAGAGGCCTTGGCCAGCTCGCCCTTTCACACTGTCCTCGGGT
GGCCGCCACCCCCCACCGCACACGCTACTTCCGTCCCGGCATCTCTGGCCTGCACACGTC
TGCGCTGTAGATACCGTATCGAGTCGGCGCGTCCGTCCAGATAGTCAATAGAGCTGCTTC
TGTGTAAATGCTATTTTAAACACTAAAAAGCATTTAATTTTAAAAAAA

Aligned organism(s): 9 entry(ies)

More info

Aligned organism(s): 9 entry(ies)

Help | Less info


               
               1-293, gnl|bosTau2|chr16 (37909287-37909582)
               

               
               1-293, gnl|Hg17|chr1 (1311702-1311413)
               

               
               1-293, gnl|Mm7|chr4 (154847648-154847938)
               


               
               432-852, gnl|bosTau2|chr16 (37909826-37910250)
               

               
               432-852, gnl|Hg17|chr1 (1311271-1310811)
               

               
               432-852, gnl|Mm7|chr4 (154848152-154848586)
               


               
               870-1122, gnl|bosTau2|chr16 (37910220-37910500)
               

               
               870-1122, gnl|Hg17|chr1 (1310846-1310586)
               

               
               870-1122, gnl|Mm7|chr4 (154848568-154848840)

Aligned organism(s): 9 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-293, gnl|bosTau2|chr16 (37909287-37909582)
               

               
               1-293, gnl|Hg17|chr1 (1311702-1311413)
               

               
               1-293, gnl|Mm7|chr4 (154847648-154847938)
               


               
               432-852, gnl|bosTau2|chr16 (37909826-37910250)
               

               
               432-852, gnl|Hg17|chr1 (1311271-1310811)
               

               
               432-852, gnl|Mm7|chr4 (154848152-154848586)
               


               
               870-1122, gnl|bosTau2|chr16 (37910220-37910500)
               

               
               870-1122, gnl|Hg17|chr1 (1310846-1310586)
               

               
               870-1122, gnl|Mm7|chr4 (154848568-154848840)

Expressed library(ies): 16 entry(ies)

More info

Expressed library(ies): 16 entry(ies)

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               ctl (0.612276)
               

               
               cga (0.279096)
               

               
               ecc (0.23007)
               

               
               ece (0.229305)
               

               
               nms (0.213858)
               

               
               mas (0.210305)
               

               
               mcp (0.170648)
               

               
               cag (0.151194)
               

               
               hyp (0.142837)
               

               
               lnt (0.142308)
               

               
               ute (0.132784)
               

               
               cbr (0.127975)
               

               
               ese (0.126502)
               

               
               eru (0.120048)
               

               
               jca (0.11396)
               

               
               jej (0.0989218)

Expressed library(ies): 16 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               ctl (0.612276)
               

               
               cga (0.279096)
               

               
               ecc (0.23007)
               

               
               ece (0.229305)
               

               
               nms (0.213858)
               

               
               mas (0.210305)
               

               
               mcp (0.170648)
               

               
               cag (0.151194)
               

               
               hyp (0.142837)
               

               
               lnt (0.142308)
               

               
               ute (0.132784)
               

               
               cbr (0.127975)
               

               
               ese (0.126502)
               

               
               eru (0.120048)
               

               
               jca (0.11396)
               

               
               jej (0.0989218)

	1-293, gnl\|bosTau2\|chr16 (37909287-37909582)
	1-293, gnl\|Hg17\|chr1 (1311702-1311413)
	1-293, gnl\|Mm7\|chr4 (154847648-154847938)

	432-852, gnl\|bosTau2\|chr16 (37909826-37910250)
	432-852, gnl\|Hg17\|chr1 (1311271-1310811)
	432-852, gnl\|Mm7\|chr4 (154848152-154848586)

	870-1122, gnl\|bosTau2\|chr16 (37910220-37910500)
	870-1122, gnl\|Hg17\|chr1 (1310846-1310586)
	870-1122, gnl\|Mm7\|chr4 (154848568-154848840)

	ctl (0.612276)
	cga (0.279096)
	ecc (0.23007)
	ece (0.229305)
	nms (0.213858)
	mas (0.210305)
	mcp (0.170648)
	cag (0.151194)
	hyp (0.142837)
	lnt (0.142308)
	ute (0.132784)
	cbr (0.127975)
	ese (0.126502)
	eru (0.120048)
	jca (0.11396)
	jej (0.0989218)