Non-Coding RNA Search

Ss1.1-Pig4-TMW8040L22.3

Sequence:


               
               AAGGAACAGAGGATTCAGAAAGCAACCAGCATGATACAACAGCCTTCACTTAAGGAGGGA
AAACTCCCAACGTGTCCCTTGGTCAGCTGGATCCCGTGCTTGTTAACAAGTACTAAATCC
TGCAACATGCCAAGCACTGTGCCAAGGGCTGGTGATTCAGTGATGCCCGAGATACACAGG
ACTGCCAGTCTCATGGAGTTTACAATTTAGAGGGACTAAACACTGTTCTAAAATACAGAA
CTTCCAGGTGGATGTTTCGATCAAATCAGCTAAGGCGTCCAGGACAGGGAAAGCCAATTC
AACTCTTAGCGCATCAAATTGTATTAGAACTAAGATCCTGAGTCTCAGTCAGCTGAGAAA
AGGACAGAGTTCTTCTCTGGAGTCTTTTTAGTGGAAACTGCATCATGGTACATGTTTTAA
CTATGTTAAAACAAATTGGTTTGGGTAGTTTCAACTGACCAGGGTCTGGGTTCATTTTTC
CCTTTCCTACTGAACACAGTTTAAATCAGAAGGCTCCTGATTCAGCTACCCCTCCTCCAC
TTTTAAGTCAGTTCAAAAACATCCCTGGTACTCCATTAGATGTTCTATTTATTAACTAAT
ATATTCTTTTGTTTTTATAAATCCAGTTCTCATTTTTCATGTCTCCTCTATAAACCTGTA
TCATAAGGCTATTAGAAACATGCTGGAAATTTCCATAATTAACCACTATCTTTTGAGAAA
ATATGTAAAATACACTGTCACTTTGTCACTTGATGTCATTCTCAAGTTATTACCTACTAA
GTTATGACTGTCATGAAGGTAGCATTAAAATAATTTGGTTGAAAGTGGCACTTCTTGGAA
TAAAGGGAGACA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               AAGGAACAGAGGATTCAGAAAGCAACCAGCATGATACAACAGCCTTCACTTAAGGAGGGA
AAACTCCCAACGTGTCCCTTGGTCAGCTGGATCCCGTGCTTGTTAACAAGTACTAAATCC
TGCAACATGCCAAGCACTGTGCCAAGGGCTGGTGATTCAGTGATGCCCGAGATACACAGG
ACTGCCAGTCTCATGGAGTTTACAATTTAGAGGGACTAAACACTGTTCTAAAATACAGAA
CTTCCAGGTGGATGTTTCGATCAAATCAGCTAAGGCGTCCAGGACAGGGAAAGCCAATTC
AACTCTTAGCGCATCAAATTGTATTAGAACTAAGATCCTGAGTCTCAGTCAGCTGAGAAA
AGGACAGAGTTCTTCTCTGGAGTCTTTTTAGTGGAAACTGCATCATGGTACATGTTTTAA
CTATGTTAAAACAAATTGGTTTGGGTAGTTTCAACTGACCAGGGTCTGGGTTCATTTTTC
CCTTTCCTACTGAACACAGTTTAAATCAGAAGGCTCCTGATTCAGCTACCCCTCCTCCAC
TTTTAAGTCAGTTCAAAAACATCCCTGGTACTCCATTAGATGTTCTATTTATTAACTAAT
ATATTCTTTTGTTTTTATAAATCCAGTTCTCATTTTTCATGTCTCCTCTATAAACCTGTA
TCATAAGGCTATTAGAAACATGCTGGAAATTTCCATAATTAACCACTATCTTTTGAGAAA
ATATGTAAAATACACTGTCACTTTGTCACTTGATGTCATTCTCAAGTTATTACCTACTAA
GTTATGACTGTCATGAAGGTAGCATTAAAATAATTTGGTTGAAAGTGGCACTTCTTGGAA
TAAAGGGAGACA

Aligned organism(s): 3 entry(ies)

More info

Aligned organism(s): 3 entry(ies)

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               1-848, gnl|bosTau2|chr8 (59710574-59709701)
               

               
               1-848, gnl|Hg17|chr9 (117556431-117557348)
               

               
               1-848, gnl|Mm7|chr4 (66275134-66275993)

Aligned organism(s): 3 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-848, gnl|bosTau2|chr8 (59710574-59709701)
               

               
               1-848, gnl|Hg17|chr9 (117556431-117557348)
               

               
               1-848, gnl|Mm7|chr4 (66275134-66275993)

Expressed library(ies): 7 entry(ies)

More info

Expressed library(ies): 7 entry(ies)

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               mgm (0.180343)
               

               
               rec (0.17307)
               

               
               liv (0.146284)
               

               
               pty (0.142714)
               

               
               lyg (0.133103)
               

               
               clu (0.119646)
               

               
               cty (0.10408)

Expressed library(ies): 7 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               mgm (0.180343)
               

               
               rec (0.17307)
               

               
               liv (0.146284)
               

               
               pty (0.142714)
               

               
               lyg (0.133103)
               

               
               clu (0.119646)
               

               
               cty (0.10408)

	1-848, gnl\|bosTau2\|chr8 (59710574-59709701)
	1-848, gnl\|Hg17\|chr9 (117556431-117557348)
	1-848, gnl\|Mm7\|chr4 (66275134-66275993)

	mgm (0.180343)
	rec (0.17307)
	liv (0.146284)
	pty (0.142714)
	lyg (0.133103)
	clu (0.119646)
	cty (0.10408)