Non-Coding RNA Search

Ss1.1-Pig4-TMW8040L24.3

Sequence:


               
               CAAGGACCCCACACCCATCGAGTTCAGCCCTGACCCACTTCCAGACAACAAGGTTCTCCA
CGTGCCCGTGGCCGTCATCGCCGGAAACCGGCCCAATTACCTGTACAGGATGCTGCGCTC
TCTGCTCTCAGCCCAGGGGGTGTCGCCCCAGATGATAACAGTTTTCATCGACGGCTACTA
CGAGGAGCCGATGGACGTGGTGGCGCTCTTTGGTCTGCGGGGCATCCAGCACACTCCCAT
CAGCATCAAGAACGCCCGTGTGTCCCAGCACTACAAGGCCAGCCTCACTGCCACGTTCAA
CCTGTTTCCGGAAGCCAAATTTGCTGTGGTTCTGGAAGAGGATCTGGACATTGCTGTAGA
TTTTTTCAGTTTCCTGAGCCAATCCATCCACCTGCTGGAGGAGGACGACAGCCTGTACTG
TATCTCTGCCTGGAATGACCAGGGGTATGAACACACCGCGGAGGACCCAGCGCTGCTGTA
CCGCGTGGAGACCATGCCTGGGCTGGGCTGGGTGCTCAGGAAGTCCTTGTACAAGGAGGA
GCTTGAGCCCAAGTGGCCCACACCGGAAAAGCTCTGGGACTGGGATATGTGGATGCGGAT
GCCGGAGCAGCGCCGAGGCCGGGAGTGCATCATCCCCGACGTGTCCCGCTCCTACCACTT
CGGCATCGTCGGCCTCAACATGAATGGCTACTTCCACGAAGCCTACTTCAAGAAGCACAA
GTTCAACACCGTTCCAGGTGTCCAGCTCAGGAACGTGGACAGTCTAAAGAAGGAAGCTTA
CGAAGTGGAGGTTCACAGACTGCTCAGTGAAGCTGAGGTTCTGGACCACAGCAGGAACCC
GTGTGAAGACGCTTTCCTGCCAGACACAGAAGGCCACACCTACGTGGCCTTTATCCGAAT
GGAGAAGGATGACGACTTCACCACCTGGACCCAGCTTGCCAAGTGCCTCCATATCTGGGA
CCTGGATGTGCGCGGCAACCACCGGGGCCTGTGGAGGTTGTTTCGGAAGAAGAACCACTT
CCTGGTGGTGGGGGTCCCAGCCTCCCCTTACTCGATGAAGAAGCCACCGTCTGTCATCCC
CATTTTCTTGGAGCCACCCCCAAAGGAGGAGGGAGCCCCAGGAGCTGCAGAACAGACATG
AGACCTCCTCCAGGACCCTGCAGGGCTGGGTACCGTGTACCCCCAGGCAGGCTAGCCCTT
CACCCCATCCTGTAGGATTTTGTAGACACTGGCAGGGGTTGGGGCTGGTTTGTTTTTAAC
ATGAGACTTAATTACTAACTCCCAGGGGAGGGTTCCCTGCTCCAACACCCCTGTTCCTGA
GTTGGAGGTCTATTTATTTCCTTCCTTGCTGGGACGGGGCAGGATAGTACCTGGGCATCC
CTGGGGTCCCTGGGCAGCTGATCCTGCCCTTTGTATACTCCCCGCTCCCAGGCCTGGCTC
AGAATCTAACCTATTTATTGACTGTCCTGAGGGCCTCGGACACAGGCTGAAGCCTGGAGG
GCCTCGATTCCTTTCTGGACCGGGGTGCTGCCCTGAGGGTGGGGCTGGCTCTTACTCAGG
AAACTGCCGTGCCCAACCCATGGACAGGCTGCTGGGGCCCACCTGCTGGGGCAGACTCAC
TCAGAGACCCTCAGACACTGAACCAGGCCTCTTCTCAGCCTCCTCTTTGTCCAGATTTCC
AAAGCTGGATAAGGGGGTCCTTGATTAAAAAAGGAGAAAAGCTCTGGGAAAAAAAAAAAA
AAAAAAAAAAAAAAAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CAAGGACCCCACACCCATCGAGTTCAGCCCTGACCCACTTCCAGACAACAAGGTTCTCCA
CGTGCCCGTGGCCGTCATCGCCGGAAACCGGCCCAATTACCTGTACAGGATGCTGCGCTC
TCTGCTCTCAGCCCAGGGGGTGTCGCCCCAGATGATAACAGTTTTCATCGACGGCTACTA
CGAGGAGCCGATGGACGTGGTGGCGCTCTTTGGTCTGCGGGGCATCCAGCACACTCCCAT
CAGCATCAAGAACGCCCGTGTGTCCCAGCACTACAAGGCCAGCCTCACTGCCACGTTCAA
CCTGTTTCCGGAAGCCAAATTTGCTGTGGTTCTGGAAGAGGATCTGGACATTGCTGTAGA
TTTTTTCAGTTTCCTGAGCCAATCCATCCACCTGCTGGAGGAGGACGACAGCCTGTACTG
TATCTCTGCCTGGAATGACCAGGGGTATGAACACACCGCGGAGGACCCAGCGCTGCTGTA
CCGCGTGGAGACCATGCCTGGGCTGGGCTGGGTGCTCAGGAAGTCCTTGTACAAGGAGGA
GCTTGAGCCCAAGTGGCCCACACCGGAAAAGCTCTGGGACTGGGATATGTGGATGCGGAT
GCCGGAGCAGCGCCGAGGCCGGGAGTGCATCATCCCCGACGTGTCCCGCTCCTACCACTT
CGGCATCGTCGGCCTCAACATGAATGGCTACTTCCACGAAGCCTACTTCAAGAAGCACAA
GTTCAACACCGTTCCAGGTGTCCAGCTCAGGAACGTGGACAGTCTAAAGAAGGAAGCTTA
CGAAGTGGAGGTTCACAGACTGCTCAGTGAAGCTGAGGTTCTGGACCACAGCAGGAACCC
GTGTGAAGACGCTTTCCTGCCAGACACAGAAGGCCACACCTACGTGGCCTTTATCCGAAT
GGAGAAGGATGACGACTTCACCACCTGGACCCAGCTTGCCAAGTGCCTCCATATCTGGGA
CCTGGATGTGCGCGGCAACCACCGGGGCCTGTGGAGGTTGTTTCGGAAGAAGAACCACTT
CCTGGTGGTGGGGGTCCCAGCCTCCCCTTACTCGATGAAGAAGCCACCGTCTGTCATCCC
CATTTTCTTGGAGCCACCCCCAAAGGAGGAGGGAGCCCCAGGAGCTGCAGAACAGACATG
AGACCTCCTCCAGGACCCTGCAGGGCTGGGTACCGTGTACCCCCAGGCAGGCTAGCCCTT
CACCCCATCCTGTAGGATTTTGTAGACACTGGCAGGGGTTGGGGCTGGTTTGTTTTTAAC
ATGAGACTTAATTACTAACTCCCAGGGGAGGGTTCCCTGCTCCAACACCCCTGTTCCTGA
GTTGGAGGTCTATTTATTTCCTTCCTTGCTGGGACGGGGCAGGATAGTACCTGGGCATCC
CTGGGGTCCCTGGGCAGCTGATCCTGCCCTTTGTATACTCCCCGCTCCCAGGCCTGGCTC
AGAATCTAACCTATTTATTGACTGTCCTGAGGGCCTCGGACACAGGCTGAAGCCTGGAGG
GCCTCGATTCCTTTCTGGACCGGGGTGCTGCCCTGAGGGTGGGGCTGGCTCTTACTCAGG
AAACTGCCGTGCCCAACCCATGGACAGGCTGCTGGGGCCCACCTGCTGGGGCAGACTCAC
TCAGAGACCCTCAGACACTGAACCAGGCCTCTTCTCAGCCTCCTCTTTGTCCAGATTTCC
AAAGCTGGATAAGGGGGTCCTTGATTAAAAAAGGAGAAAAGCTCTGGGAAAAAAAAAAAA
AAAAAAAAAAAAAAAAAAAAAAAA

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|10434295|dbj|BAB14207.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|10434295|dbj|BAB14207.1|

Predicted RNA structure(s): 2 entry(ies)

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Predicted RNA structure(s): 2 entry(ies)

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               941-1477, - strand, RNAz p=0.994532
               

               
               1584-1742, - strand, RNAz p=0.937605

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               941-1477, - strand, RNAz p=0.994532
               

               
               1584-1742, - strand, RNAz p=0.937605

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               1-1742, gnl|bosTau2|chr19 (32782087-32783840)
               

               
               1-1742, gnl|Hg17|chr1 (46372002-46366379)
               

               
               1-1742, gnl|Mm7|chr4 (115530622-115536283)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-1742, gnl|bosTau2|chr19 (32782087-32783840)
               

               
               1-1742, gnl|Hg17|chr1 (46372002-46366379)
               

               
               1-1742, gnl|Mm7|chr4 (115530622-115536283)

Expressed library(ies): 14 entry(ies)

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Expressed library(ies): 14 entry(ies)

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               cbr (0.639877)
               

               
               mas (0.42061)
               

               
               cov (0.396458)
               

               
               eru (0.240096)
               

               
               fcc (0.197785)
               

               
               fbs (0.175346)
               

               
               mcp (0.170648)
               

               
               fhi (0.169578)
               

               
               cki (0.165235)
               

               
               cag (0.151194)
               

               
               pty (0.142714)
               

               
               pla (0.133672)
               

               
               cly (0.120642)
               

               
               cty (0.10408)

Expressed library(ies): 14 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               cbr (0.639877)
               

               
               mas (0.42061)
               

               
               cov (0.396458)
               

               
               eru (0.240096)
               

               
               fcc (0.197785)
               

               
               fbs (0.175346)
               

               
               mcp (0.170648)
               

               
               fhi (0.169578)
               

               
               cki (0.165235)
               

               
               cag (0.151194)
               

               
               pty (0.142714)
               

               
               pla (0.133672)
               

               
               cly (0.120642)
               

               
               cty (0.10408)

	941-1477, - strand, RNAz p=0.994532
	1584-1742, - strand, RNAz p=0.937605

	1-1742, gnl\|bosTau2\|chr19 (32782087-32783840)
	1-1742, gnl\|Hg17\|chr1 (46372002-46366379)
	1-1742, gnl\|Mm7\|chr4 (115530622-115536283)

	cbr (0.639877)
	mas (0.42061)
	cov (0.396458)
	eru (0.240096)
	fcc (0.197785)
	fbs (0.175346)
	mcp (0.170648)
	fhi (0.169578)
	cki (0.165235)
	cag (0.151194)
	pty (0.142714)
	pla (0.133672)
	cly (0.120642)
	cty (0.10408)