Ss1.1-Pig4-TMW8040M22.3
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| AAAAGTTGCCGTCTCCCCGGGGGCCGGCCAGTCTTATGATCCAGCGGATCCTCCTGGGGA GGCCGGGCCGGGGAGAGGGCGCGGGCGCCGAACAGCGGGGGCAGCGGGCAGGCGCGGCGA CCGGGGCCCGGGCGGGGATCCGGGCAGCGACCGAGGCGGCGGCAGCGCCCCGGGCCCGCC GCCCCTTCCCCTCGGGCAGGGGGAGCCGCTGCATGGGGCCGGGGGGGCGGCCCTGCTGCG CGGAGCGGCGGCGGCGGCGGCGGACCCCCCAGGCGGGCTGGGGCTGAGCCCGGGGCCGGG GCGGGGGCTCCGGGGGGACCATGCCCGGAGGCCGGCCGGCCGCAGCATGGCTCACGGGCC CGGCGCGCTGATGCTCAAGTGCGTGGTGGTCGGCGACGGGGCGGTGGGCAAGACTTGCCT ACTCATGAGCTATGCCAACGACGCCTTCCCGGAGGAGTACGTGCCCACCGTCTTCGACCA CTACGCAGTCAGCGTCACCGTAGGGGGCAAGCAGTACCTCCTGGGACTCTATGACACAGC CGGACAGGAAGACTATGATCGTCTGAGGCCTTTATCTTATCCAATGACTGATGTCTTCCT TATATGCTTCTCTGTGGTAAATCCAGCCTCGTTTCAAAATGTGAAAGAGGAGTGGGTGCC AGAACTTAAGGAATACGCACCAAATGTACCCTTTTTATTAATAGGAACTCAGATTGATCT CCGAGATGACCCCAAAACTTTAGCAAGACTGAATGATATGAAAGAAAAACCTATATGTGT GGAACAAGGACAGAAACTAGCAAAAGAGATAGGTGCGTGCTGCTATGTGGAATGTTCAGC TTTAACCCAGAAGGGATTGAAGACTGTTTTTGATGAGGCTATCATAGCCATTTTAACTCC AAAGAAACACACAGTGAAAAAAAGAATAGGATCAAGATGTATAAACTGTTGTTTGATTAC GTGAGAAGACATCTTCAGTGGCCAAGGAAACTGTCCATTTCTCTCAGAAAGCATATGAAA TGCTACAGCTATACCCAGACCTCTTATCAATAATGAAGCAGTATAAAACTTGAAAGGAAA AAAAAAGAAAAA |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| AAAAGTTGCCGTCTCCCCGGGGGCCGGCCAGTCTTATGATCCAGCGGATCCTCCTGGGGA GGCCGGGCCGGGGAGAGGGCGCGGGCGCCGAACAGCGGGGGCAGCGGGCAGGCGCGGCGA CCGGGGCCCGGGCGGGGATCCGGGCAGCGACCGAGGCGGCGGCAGCGCCCCGGGCCCGCC GCCCCTTCCCCTCGGGCAGGGGGAGCCGCTGCATGGGGCCGGGGGGGCGGCCCTGCTGCG CGGAGCGGCGGCGGCGGCGGCGGACCCCCCAGGCGGGCTGGGGCTGAGCCCGGGGCCGGG GCGGGGGCTCCGGGGGGACCATGCCCGGAGGCCGGCCGGCCGCAGCATGGCTCACGGGCC CGGCGCGCTGATGCTCAAGTGCGTGGTGGTCGGCGACGGGGCGGTGGGCAAGACTTGCCT ACTCATGAGCTATGCCAACGACGCCTTCCCGGAGGAGTACGTGCCCACCGTCTTCGACCA CTACGCAGTCAGCGTCACCGTAGGGGGCAAGCAGTACCTCCTGGGACTCTATGACACAGC CGGACAGGAAGACTATGATCGTCTGAGGCCTTTATCTTATCCAATGACTGATGTCTTCCT TATATGCTTCTCTGTGGTAAATCCAGCCTCGTTTCAAAATGTGAAAGAGGAGTGGGTGCC AGAACTTAAGGAATACGCACCAAATGTACCCTTTTTATTAATAGGAACTCAGATTGATCT CCGAGATGACCCCAAAACTTTAGCAAGACTGAATGATATGAAAGAAAAACCTATATGTGT GGAACAAGGACAGAAACTAGCAAAAGAGATAGGTGCGTGCTGCTATGTGGAATGTTCAGC TTTAACCCAGAAGGGATTGAAGACTGTTTTTGATGAGGCTATCATAGCCATTTTAACTCC AAAGAAACACACAGTGAAAAAAAGAATAGGATCAAGATGTATAAACTGTTGTTTGATTAC GTGAGAAGACATCTTCAGTGGCCAAGGAAACTGTCCATTTCTCTCAGAAAGCATATGAAA TGCTACAGCTATACCCAGACCTCTTATCAATAATGAAGCAGTATAAAACTTGAAAGGAAA AAAAAAGAAAAA |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 2 entry(ies) | More info |
| Predicted RNA structure(s): 2 entry(ies) | Help | Less info |
| 380-496, - strand, RNAz p=0.99719 | |
| 807-925, + strand, RNAz p=0.989606 |
| Predicted RNA structure(s): 2 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 380-496, - strand, RNAz p=0.99719 | |
| 807-925, + strand, RNAz p=0.989606 |
| Aligned organism(s): 41 entry(ies) | More info |
| Aligned organism(s): 41 entry(ies) | Help | Less info |
| 2-496, gnl|bosTau2|chr11 (23105394-23104902) | |
| 2-496, gnl|Hg17|chr2 (46681492-46681987) | |
| 2-496, gnl|Mm7|chr17 (85265703-85266198) | |
| 525-715, gnl|bosTau2|chr10 (49103665-49103853) | |
| 525-715, gnl|canFam2|chr8 (40899098-40899293) | |
| 525-715, gnl|danRer3|chr20 (23605845-23605672) | |
| 525-715, gnl|dasNov1|scaffold_15924 (16441-16650) | |
| 525-715, gnl|echTel1|scaffold_276193 (39612-39811) | |
| 525-715, gnl|fr1|chrUn (221984657-221984469) | |
| 525-715, gnl|galGal2|chr5 (50179305-50179125) | |
| 525-715, gnl|hg17|chr14 (62817415-62817614) | |
| 525-715, gnl|Hg17|chr14 (62817423-62817609) | |
| 525-715, gnl|loxAfr1|scaffold_15016 (42521-42322) | |
| 525-715, gnl|mm7|chr12 (73350109-73350308) | |
| 525-715, gnl|Mm7|chr12 (73350119-73350303) | |
| 525-715, gnl|monDom2|scaffold_8 (76722063-76722263) | |
| 525-715, gnl|oryCun1|scaffold_203674 (43997-44196) | |
| 525-715, gnl|panTro1|chr15 (62377628-62377827) | |
| 525-715, gnl|rheMac2|chr7 (126270703-126270902) | |
| 525-715, gnl|rn3|chr6 (97988530-97988729) | |
| 525-715, gnl|tetNig1|chrUn_random (138948485-138948671) | |
| 525-715, gnl|xenTro1|scaffold_1474 (98020-97826) | |
| 807-1086, gnl|bosTau2|chr11 (23068660-23068386) | |
| 807-1086, gnl|canFam2|chr10 (51929213-51929383) | |
| 807-1086, gnl|danRer3|chr12 (23242280-23242450) | |
| 807-1086, gnl|dasNov1|scaffold_63091 (7269-7440) | |
| 807-1086, gnl|echTel1|scaffold_311875 (67968-67810) | |
| 807-1086, gnl|fr1|chrUn (221981973-221981810) | |
| 807-1086, gnl|galGal2|chr3 (23063600-23063771) | |
| 807-1086, gnl|hg17|chr14 (49136923-49137095) | |
| 807-1086, gnl|Hg17|chr2 (46719716-46719993) | |
| 807-1086, gnl|loxAfr1|scaffold_55921 (3437-3269) | |
| 807-1086, gnl|mm7|chr17 (85299346-85299516) | |
| 807-1086, gnl|Mm7|chr17 (85299345-85299616) | |
| 807-1086, gnl|monDom2|scaffold_1 (6281370-6281540) | |
| 807-1086, gnl|oryCun1|scaffold_206187 (119567-119737) | |
| 807-1086, gnl|panTro1|chr15 (48534272-48534444) | |
| 807-1086, gnl|rheMac2|chr13 (46706150-46706320) | |
| 807-1086, gnl|rn3|chr1 (107237405-107237575) | |
| 807-1086, gnl|tetNig1|chrUn_random (138951526-138951689) | |
| 807-1086, gnl|xenTro1|scaffold_462 (278149-278323) |
| Aligned organism(s): 41 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 2-496, gnl|bosTau2|chr11 (23105394-23104902) | |
| 2-496, gnl|Hg17|chr2 (46681492-46681987) | |
| 2-496, gnl|Mm7|chr17 (85265703-85266198) | |
| 525-715, gnl|bosTau2|chr10 (49103665-49103853) | |
| 525-715, gnl|canFam2|chr8 (40899098-40899293) | |
| 525-715, gnl|danRer3|chr20 (23605845-23605672) | |
| 525-715, gnl|dasNov1|scaffold_15924 (16441-16650) | |
| 525-715, gnl|echTel1|scaffold_276193 (39612-39811) | |
| 525-715, gnl|fr1|chrUn (221984657-221984469) | |
| 525-715, gnl|galGal2|chr5 (50179305-50179125) | |
| 525-715, gnl|hg17|chr14 (62817415-62817614) | |
| 525-715, gnl|Hg17|chr14 (62817423-62817609) | |
| 525-715, gnl|loxAfr1|scaffold_15016 (42521-42322) | |
| 525-715, gnl|mm7|chr12 (73350109-73350308) | |
| 525-715, gnl|Mm7|chr12 (73350119-73350303) | |
| 525-715, gnl|monDom2|scaffold_8 (76722063-76722263) | |
| 525-715, gnl|oryCun1|scaffold_203674 (43997-44196) | |
| 525-715, gnl|panTro1|chr15 (62377628-62377827) | |
| 525-715, gnl|rheMac2|chr7 (126270703-126270902) | |
| 525-715, gnl|rn3|chr6 (97988530-97988729) | |
| 525-715, gnl|tetNig1|chrUn_random (138948485-138948671) | |
| 525-715, gnl|xenTro1|scaffold_1474 (98020-97826) | |
| 807-1086, gnl|bosTau2|chr11 (23068660-23068386) | |
| 807-1086, gnl|canFam2|chr10 (51929213-51929383) | |
| 807-1086, gnl|danRer3|chr12 (23242280-23242450) | |
| 807-1086, gnl|dasNov1|scaffold_63091 (7269-7440) | |
| 807-1086, gnl|echTel1|scaffold_311875 (67968-67810) | |
| 807-1086, gnl|fr1|chrUn (221981973-221981810) | |
| 807-1086, gnl|galGal2|chr3 (23063600-23063771) | |
| 807-1086, gnl|hg17|chr14 (49136923-49137095) | |
| 807-1086, gnl|Hg17|chr2 (46719716-46719993) | |
| 807-1086, gnl|loxAfr1|scaffold_55921 (3437-3269) | |
| 807-1086, gnl|mm7|chr17 (85299346-85299516) | |
| 807-1086, gnl|Mm7|chr17 (85299345-85299616) | |
| 807-1086, gnl|monDom2|scaffold_1 (6281370-6281540) | |
| 807-1086, gnl|oryCun1|scaffold_206187 (119567-119737) | |
| 807-1086, gnl|panTro1|chr15 (48534272-48534444) | |
| 807-1086, gnl|rheMac2|chr13 (46706150-46706320) | |
| 807-1086, gnl|rn3|chr1 (107237405-107237575) | |
| 807-1086, gnl|tetNig1|chrUn_random (138951526-138951689) | |
| 807-1086, gnl|xenTro1|scaffold_462 (278149-278323) |
| Expressed library(ies): 21 entry(ies) | More info |
| Expressed library(ies): 21 entry(ies) | Help | Less info |
| vin (1.66279) | |
| sme (1.52718) | |
| hea (1.22699) | |
| ssp (0.813118) | |
| isp (0.75188) | |
| bfe (0.599431) | |
| aor (0.585823) | |
| bla (0.497389) | |
| pgl (0.473934) | |
| che (0.408942) | |
| ste (0.405625) | |
| sin (0.349895) | |
| rec (0.346141) | |
| ldo (0.291008) | |
| spc (0.226732) | |
| mas (0.210305) | |
| gul (0.177588) | |
| cut (0.169924) | |
| mga (0.160205) | |
| ski (0.146735) | |
| sug (0.127291) |
| Expressed library(ies): 21 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| vin (1.66279) | |
| sme (1.52718) | |
| hea (1.22699) | |
| ssp (0.813118) | |
| isp (0.75188) | |
| bfe (0.599431) | |
| aor (0.585823) | |
| bla (0.497389) | |
| pgl (0.473934) | |
| che (0.408942) | |
| ste (0.405625) | |
| sin (0.349895) | |
| rec (0.346141) | |
| ldo (0.291008) | |
| spc (0.226732) | |
| mas (0.210305) | |
| gul (0.177588) | |
| cut (0.169924) | |
| mga (0.160205) | |
| ski (0.146735) | |
| sug (0.127291) |