Ss1.1-Pig4-TMW8040M23.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| GATGAAATGGCCCCTCCTTGATGTCCCCACCAGCACCACGGTCAAGGACACCAGGTCACC ATCCCCAGCACACTTGTCCAATAAAGTTCCTGTTGTTCAGCACCCACATCACATGCACCC GTTGACGCCCCTCATCACCTACAGCAACGACCACTTCTCCCCTGGCTCCCCTCCCACACA CCTCTCCCCGGAGATCGATCCAAAGACAGGAATCCCCCGGCCCCCTCACCCGTCTGAGCT GCCTCCGTATTACCCACTCTCTCCTGGAGCTGTCGGGCAAATCCCCCATCCCCTCGGCTG GCTCGTCCCACAGCAAGGACAGCCCATGTACTCCCTTCCTCCCGGCGGCTTCCGGCACCC CTACCCTGCCCTCGCCATGAACGCCTCCATGTCCAGCCTGGTTTCCAGTCGGTTCTCCCC TCACATGGTGGCTCCGGCCCATCCTGGTCTGCCCACCTCAGGGATCCCCCACCCCGCCAT CGTCTCCCCCATCGTCAAGCAGGAACCAGCGCCCCCCAGCCTGAGCCCGGCAGTGAGCGC GAAATCACCAGTCACGGTGAAAAAAGAGGAAGAAAAGAAACCCCACGTGAAGAAGCCTCT TAATGCCTTCATGTTATATATGAAGGAGATGAGGGCCAAGGTGGTGGCCGAGTGCACCCT AAAGGAAAGTGCAGCCATCAACCAGATCCTGGGGAGAAAGTGGCACAACCTCTCGCGAGA AGAGCAGGCCAAGTACTACGAGCTGGCCCGGAAGGAGCGGCAGCTGCACTCGCAGCTCTA CCCGACTTGGTCCGCGCGGGACAACTACGGTAAGAAAAAGAAGAGGAAGCGGGAAAAGCA GCTATCGCAGACACAGTCCCAGCAGCAAGTCCCAGAGGCAGAGGGTGCTCTGGCCTCCAA AAGCAAGAAGCCATGTGTCCAGTACCTGCCCCCCGAGAAGCCCTGTGACAGCCCTGCCTC CTCCCACGGCAG |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| GATGAAATGGCCCCTCCTTGATGTCCCCACCAGCACCACGGTCAAGGACACCAGGTCACC ATCCCCAGCACACTTGTCCAATAAAGTTCCTGTTGTTCAGCACCCACATCACATGCACCC GTTGACGCCCCTCATCACCTACAGCAACGACCACTTCTCCCCTGGCTCCCCTCCCACACA CCTCTCCCCGGAGATCGATCCAAAGACAGGAATCCCCCGGCCCCCTCACCCGTCTGAGCT GCCTCCGTATTACCCACTCTCTCCTGGAGCTGTCGGGCAAATCCCCCATCCCCTCGGCTG GCTCGTCCCACAGCAAGGACAGCCCATGTACTCCCTTCCTCCCGGCGGCTTCCGGCACCC CTACCCTGCCCTCGCCATGAACGCCTCCATGTCCAGCCTGGTTTCCAGTCGGTTCTCCCC TCACATGGTGGCTCCGGCCCATCCTGGTCTGCCCACCTCAGGGATCCCCCACCCCGCCAT CGTCTCCCCCATCGTCAAGCAGGAACCAGCGCCCCCCAGCCTGAGCCCGGCAGTGAGCGC GAAATCACCAGTCACGGTGAAAAAAGAGGAAGAAAAGAAACCCCACGTGAAGAAGCCTCT TAATGCCTTCATGTTATATATGAAGGAGATGAGGGCCAAGGTGGTGGCCGAGTGCACCCT AAAGGAAAGTGCAGCCATCAACCAGATCCTGGGGAGAAAGTGGCACAACCTCTCGCGAGA AGAGCAGGCCAAGTACTACGAGCTGGCCCGGAAGGAGCGGCAGCTGCACTCGCAGCTCTA CCCGACTTGGTCCGCGCGGGACAACTACGGTAAGAAAAAGAAGAGGAAGCGGGAAAAGCA GCTATCGCAGACACAGTCCCAGCAGCAAGTCCCAGAGGCAGAGGGTGCTCTGGCCTCCAA AAGCAAGAAGCCATGTGTCCAGTACCTGCCCCCCGAGAAGCCCTGTGACAGCCCTGCCTC CTCCCACGGCAG |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
| 541-700, + strand, RNAz p=0.991994 |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 541-700, + strand, RNAz p=0.991994 |
| Aligned organism(s): 22 entry(ies) | More info |
| Aligned organism(s): 22 entry(ies) | Help | Less info |
| 76-210, gnl|bosTau2|chr11 (34807968-34807834) | |
| 76-210, gnl|canFam2|chr17 (42768870-42768699) | |
| 76-210, gnl|danRer3|chr12 (28667366-28667214) | |
| 76-210, gnl|dasNov1|scaffold_164 (49039-48863) | |
| 76-210, gnl|echTel1|scaffold_280843 (800-640) | |
| 76-210, gnl|fr1|chrUn (170943470-170943642) | |
| 76-210, gnl|galGal2|chr13 (14899054-14898884) | |
| 76-210, gnl|hg17|chr2 (85441250-85441420) | |
| 76-210, gnl|Hg17|chr2 (85441264-85441398) | |
| 76-210, gnl|loxAfr1|scaffold_3548 (27692-27860) | |
| 76-210, gnl|mm7|chr6 (72652184-72652010) | |
| 76-210, gnl|Mm7|chr6 (72652164-72652030) | |
| 76-210, gnl|monDom2|scaffold_68 (8893309-8893460) | |
| 76-210, gnl|oryCun1|scaffold_106240 (3666-3491) | |
| 76-210, gnl|panTro1|chr12 (88305509-88305679) | |
| 76-210, gnl|rheMac2|chr13 (85865299-85865470) | |
| 76-210, gnl|rn3|chr4 (106379726-106379549) | |
| 76-210, gnl|tetNig1|chrUn_random (34548762-34548927) | |
| 76-210, gnl|xenTro1|scaffold_217 (1576520-1576367) | |
| 541-700, gnl|bosTau2|chr11 (34804320-34804161) | |
| 541-700, gnl|Hg17|chr2 (85444987-85445146) | |
| 541-700, gnl|Mm7|chr6 (72649305-72649146) |
| Aligned organism(s): 22 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 76-210, gnl|bosTau2|chr11 (34807968-34807834) | |
| 76-210, gnl|canFam2|chr17 (42768870-42768699) | |
| 76-210, gnl|danRer3|chr12 (28667366-28667214) | |
| 76-210, gnl|dasNov1|scaffold_164 (49039-48863) | |
| 76-210, gnl|echTel1|scaffold_280843 (800-640) | |
| 76-210, gnl|fr1|chrUn (170943470-170943642) | |
| 76-210, gnl|galGal2|chr13 (14899054-14898884) | |
| 76-210, gnl|hg17|chr2 (85441250-85441420) | |
| 76-210, gnl|Hg17|chr2 (85441264-85441398) | |
| 76-210, gnl|loxAfr1|scaffold_3548 (27692-27860) | |
| 76-210, gnl|mm7|chr6 (72652184-72652010) | |
| 76-210, gnl|Mm7|chr6 (72652164-72652030) | |
| 76-210, gnl|monDom2|scaffold_68 (8893309-8893460) | |
| 76-210, gnl|oryCun1|scaffold_106240 (3666-3491) | |
| 76-210, gnl|panTro1|chr12 (88305509-88305679) | |
| 76-210, gnl|rheMac2|chr13 (85865299-85865470) | |
| 76-210, gnl|rn3|chr4 (106379726-106379549) | |
| 76-210, gnl|tetNig1|chrUn_random (34548762-34548927) | |
| 76-210, gnl|xenTro1|scaffold_217 (1576520-1576367) | |
| 541-700, gnl|bosTau2|chr11 (34804320-34804161) | |
| 541-700, gnl|Hg17|chr2 (85444987-85445146) | |
| 541-700, gnl|Mm7|chr6 (72649305-72649146) |
| Expressed library(ies): 3 entry(ies) | More info |
| Expressed library(ies): 3 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| ese (0.253004) | |
| nca (0.136874) | |
| cov (0.132153) |