Non-Coding RNA Search

Ss1.1-Pig4-TMW8040N09.3

Sequence:


               
               TTTCCGGGGAGAAACTTTAGGATATACTCGGTTTCAAGGTGTTTATTTGCCTTTGTTGTG
GGAACAGAGTTTTTGCTGGAAAAGTCCGATTGCTCTGGGCTACACAAGGGGCCACTTCTC
TGCCTTGGTTGCCATGGAGAACGACGGCTATGGTAACCGAGGCGCTGGTGCTAACCTGAA
CACCGATGACGACGTCACGGTCACCTTTCTGCCCCTGGTGGACAGTGAGAGGAAGCTACT
CCACGTGCACTTTCTTTCTGCTCAGGAGCTAGGTAACGAGGAACAGCAAGAAAAACTGCT
CAGGGAGTGGCTGGACTGCTGTGTGACTGAGGGGGGCGTTCTGGTCGCCATGCAGAAGAG
CTCTCGGCGCCGAAACCACCCCCTGGTCACGCAGATGGTAGAAAAGTGGCTTGACCGCTA
CCGACAGATCCGGCCCTGTACCTCCCTGTCGGACGGAGAGGAGGATGAAGACGATGAAGA
CGAGTGAAGACAAACCCAGGAGCAGAAGACCAAGGTACCAGCTCTGTCGCGACCCCACCA
TCAGTGTGGTGCTGCAGGCAGAGCGCACGGCATGGCATGAAGGGACTGGGCAGCAGCTGC
TTGGAAGGGTTTTCTGATCCACACCCGGCGGAGATGATGCGTCTGCTGCAGGAGGAGACA
GAGACCTTTGGACTCCAGTTTGTAAAAAACTAATTTTATTAAGACAGAACTTTTTTCCTT
TCAAATTGTAAATCTGTCTATAAATGTAACGCATGTGGTTGTGTAAGAAGTTGTGTGATA
GGAAAAGTCGTACCAGCATCTTCATGTCATTGAGAAGTTTTTCCAGCACGGGCACCTCCA
AAAGCACATGGCACGTGACTCTTTGTTCCTTTGAGATAATTCTTCTTTAAGTAGAACCTG
GCATTCTCCTTCCATCTTAAGAGATCCATTGTCCATCACGTCTCGCTAGAGCTCGCTGGA
GATTTGGAACGTCTTTGTACAAATTATCCACAGCAAAACAGAAAAATAAAAACAAGCTTT
TATTTTATTAATAATTTAGTTCCTGTTGTGCCCAATAAAATAAAATCGAATCTTTGAGGA
ACAGACTGTAAGGAAAGTAAGAATTGCTTATCGAGTGCATTCACATAGACCTCGTTCCTG
CGTTTTGGTTTCTATTATTTTGTCTTTTTAAGGTTTTTCCGGTGTGCCCCTTTTCAGTAT
TTAGGTATTTATTTGTTTGGAAGAGTGCCCTTAAAATGAGGGATCTTCCACCAGACTCTG
GGCAGGAGTCTCTTTGTGAGCAGTTAGTCCTGGGTATAAACTGGGGGCGCGCTTGGGGAG
CTGGCCTGCTCGCAAGTAACTGAACGGGTTGTGCGAAATTTGCTCCCTTGACTCTGTTCA
GACAATGTTGTACTCCCAAGTTTCCCTGCAGAAGGTCTTTGGATTCTTACTGTCTTTTAT
CAACTCTGCTTTAAGCAAATCGTGTTAGAAAGGCATGCCTTTGCTTGGGCTAATTGGGAC
TATTAGTTCAGTAGAGAATAAAGATTTAAGAATGCAGTTTAAGGTGGTAAACGCATTGTA
TAATGAATTTCTCAGTGAATATTCTGAGAATTTTTGCATGTTGGTTAACTGTGGCCATTC
TTATTTAAAGTTTGAAAACTTTAGTCTTAGGTAGAAAAATTTTCTATATAAAGTATTATT
TGACCACTTCAGGTATACATTCAATACTGGGTAAAAGTTTCAGACCCATCTCAGGAACAC
AGAAAGACGTAGTGTCCTGATACG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TTTCCGGGGAGAAACTTTAGGATATACTCGGTTTCAAGGTGTTTATTTGCCTTTGTTGTG
GGAACAGAGTTTTTGCTGGAAAAGTCCGATTGCTCTGGGCTACACAAGGGGCCACTTCTC
TGCCTTGGTTGCCATGGAGAACGACGGCTATGGTAACCGAGGCGCTGGTGCTAACCTGAA
CACCGATGACGACGTCACGGTCACCTTTCTGCCCCTGGTGGACAGTGAGAGGAAGCTACT
CCACGTGCACTTTCTTTCTGCTCAGGAGCTAGGTAACGAGGAACAGCAAGAAAAACTGCT
CAGGGAGTGGCTGGACTGCTGTGTGACTGAGGGGGGCGTTCTGGTCGCCATGCAGAAGAG
CTCTCGGCGCCGAAACCACCCCCTGGTCACGCAGATGGTAGAAAAGTGGCTTGACCGCTA
CCGACAGATCCGGCCCTGTACCTCCCTGTCGGACGGAGAGGAGGATGAAGACGATGAAGA
CGAGTGAAGACAAACCCAGGAGCAGAAGACCAAGGTACCAGCTCTGTCGCGACCCCACCA
TCAGTGTGGTGCTGCAGGCAGAGCGCACGGCATGGCATGAAGGGACTGGGCAGCAGCTGC
TTGGAAGGGTTTTCTGATCCACACCCGGCGGAGATGATGCGTCTGCTGCAGGAGGAGACA
GAGACCTTTGGACTCCAGTTTGTAAAAAACTAATTTTATTAAGACAGAACTTTTTTCCTT
TCAAATTGTAAATCTGTCTATAAATGTAACGCATGTGGTTGTGTAAGAAGTTGTGTGATA
GGAAAAGTCGTACCAGCATCTTCATGTCATTGAGAAGTTTTTCCAGCACGGGCACCTCCA
AAAGCACATGGCACGTGACTCTTTGTTCCTTTGAGATAATTCTTCTTTAAGTAGAACCTG
GCATTCTCCTTCCATCTTAAGAGATCCATTGTCCATCACGTCTCGCTAGAGCTCGCTGGA
GATTTGGAACGTCTTTGTACAAATTATCCACAGCAAAACAGAAAAATAAAAACAAGCTTT
TATTTTATTAATAATTTAGTTCCTGTTGTGCCCAATAAAATAAAATCGAATCTTTGAGGA
ACAGACTGTAAGGAAAGTAAGAATTGCTTATCGAGTGCATTCACATAGACCTCGTTCCTG
CGTTTTGGTTTCTATTATTTTGTCTTTTTAAGGTTTTTCCGGTGTGCCCCTTTTCAGTAT
TTAGGTATTTATTTGTTTGGAAGAGTGCCCTTAAAATGAGGGATCTTCCACCAGACTCTG
GGCAGGAGTCTCTTTGTGAGCAGTTAGTCCTGGGTATAAACTGGGGGCGCGCTTGGGGAG
CTGGCCTGCTCGCAAGTAACTGAACGGGTTGTGCGAAATTTGCTCCCTTGACTCTGTTCA
GACAATGTTGTACTCCCAAGTTTCCCTGCAGAAGGTCTTTGGATTCTTACTGTCTTTTAT
CAACTCTGCTTTAAGCAAATCGTGTTAGAAAGGCATGCCTTTGCTTGGGCTAATTGGGAC
TATTAGTTCAGTAGAGAATAAAGATTTAAGAATGCAGTTTAAGGTGGTAAACGCATTGTA
TAATGAATTTCTCAGTGAATATTCTGAGAATTTTTGCATGTTGGTTAACTGTGGCCATTC
TTATTTAAAGTTTGAAAACTTTAGTCTTAGGTAGAAAAATTTTCTATATAAAGTATTATT
TGACCACTTCAGGTATACATTCAATACTGGGTAAAAGTTTCAGACCCATCTCAGGAACAC
AGAAAGACGTAGTGTCCTGATACG

Coded protein: 1 entry(ies)

More info

Coded protein: 1 entry(ies)

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               gi|50749967|ref|XP_421816.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|50749967|ref|XP_421816.1|

Predicted RNA structure(s): 3 entry(ies)

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Predicted RNA structure(s): 3 entry(ies)

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               306-425, + strand, RNAz p=0.799677
               

               
               1390-1623, - strand, RNAz p=0.989278
               

               
               1644-1762, - strand, RNAz p=0.610709

Predicted RNA structure(s): 3 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               306-425, + strand, RNAz p=0.799677
               

               
               1390-1623, - strand, RNAz p=0.989278
               

               
               1644-1762, - strand, RNAz p=0.610709

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               267-1762, gnl|bosTau2|chr26 (31148455-31149953)
               

               
               267-1762, gnl|Hg17|chr10 (126663331-126664785)
               

               
               267-1762, gnl|Mm7|chr7 (129388625-129390132)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               267-1762, gnl|bosTau2|chr26 (31148455-31149953)
               

               
               267-1762, gnl|Hg17|chr10 (126663331-126664785)
               

               
               267-1762, gnl|Mm7|chr7 (129388625-129390132)

Expressed library(ies): 19 entry(ies)

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Expressed library(ies): 19 entry(ies)

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               cte (0.58548)
               

               
               thg (0.507164)
               

               
               tbr (0.462535)
               

               
               ton (0.351)
               

               
               cje (0.330469)
               

               
               sme (0.305437)
               

               
               aor (0.195274)
               

               
               cmu (0.186393)
               

               
               fty (0.17584)
               

               
               mcp (0.170648)
               

               
               nje (0.16592)
               

               
               lun (0.150489)
               

               
               fat (0.147427)
               

               
               csk (0.140746)
               

               
               ssp (0.13552)
               

               
               ste (0.135208)
               

               
               pla (0.133672)
               

               
               sug (0.127291)
               

               
               ldo (0.0970026)

Expressed library(ies): 19 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               cte (0.58548)
               

               
               thg (0.507164)
               

               
               tbr (0.462535)
               

               
               ton (0.351)
               

               
               cje (0.330469)
               

               
               sme (0.305437)
               

               
               aor (0.195274)
               

               
               cmu (0.186393)
               

               
               fty (0.17584)
               

               
               mcp (0.170648)
               

               
               nje (0.16592)
               

               
               lun (0.150489)
               

               
               fat (0.147427)
               

               
               csk (0.140746)
               

               
               ssp (0.13552)
               

               
               ste (0.135208)
               

               
               pla (0.133672)
               

               
               sug (0.127291)
               

               
               ldo (0.0970026)

	306-425, + strand, RNAz p=0.799677
	1390-1623, - strand, RNAz p=0.989278
	1644-1762, - strand, RNAz p=0.610709

	267-1762, gnl\|bosTau2\|chr26 (31148455-31149953)
	267-1762, gnl\|Hg17\|chr10 (126663331-126664785)
	267-1762, gnl\|Mm7\|chr7 (129388625-129390132)

	cte (0.58548)
	thg (0.507164)
	tbr (0.462535)
	ton (0.351)
	cje (0.330469)
	sme (0.305437)
	aor (0.195274)
	cmu (0.186393)
	fty (0.17584)
	mcp (0.170648)
	nje (0.16592)
	lun (0.150489)
	fat (0.147427)
	csk (0.140746)
	ssp (0.13552)
	ste (0.135208)
	pla (0.133672)
	sug (0.127291)
	ldo (0.0970026)