Ss1.1-Pig4-TMW8040N10.3
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| CTGTTTAGATATAACAGTCCTTGGACTGCGGGAGCCTGAGAGTCCGGTGGACCAGGCTGT GGTGTAGTATAAAGGCGGCGCCCAGAAGAAGGGGCGGGGCGTGGGAGAAGGCTCCCGGCC CGCCCCGCCATGTGGCACCCGCTGGTCCTGCTGCTGCTGCTCCCTTCTGCCTCGTTGCCC GCCTCCACTGCAGCCCCGATCCGCGATGGTGACGCCCAGGAGAGCTCCTCGGGTTTTCTA GGCCTCCGCAGTCTACTCCAAGGCTTCACCCGGCTTTTTCTGAAAGATGACCTTCTGCGG GGCATGGACAGCTTCTTCTCTGCCCCAATGGACTTCCGGGGCCTCCCCAGGAACTACCAC CAAGAAGAGAACCAGGAGCGCAGGCTGGGGAACAATACTCTCTCCAGCCACCTCCAGATT GACAAGGTGACCGACAACAAGACAGGAGAGGTGCTGATCTCTGAGAAGGTGGTAGCATCC ATTGATCCAGAAGAGAGGAGCTTGGAGGGTAACTGGAAGGTACCCAAGATAGAGGAGAAG GAGGCCCTGGCGCCTGTCCCGAAGGCCGTGGACAGCTTCCACCCGGAACCCCATCCCCGA GTAGCCTTCTGGATCATGAAACTGCCACGGCGGAGGTCCCACCAGGATGCTCAGGAGGGC AGCCGATGGCTTAGTGAGAAGCGACACCGCCTGCAGGCCATCCGGGATGGGCTCCGAGAG GGGACCCACGAGGATGTCCTCGAAGACAGGACCCAGAGCCCCTCCCATGCCAAGCTGTCC GCTCGCAAGACCCACTTCCTTTATATCCTCAGACCTTCCCAGCAGTTATAGGAGCGAGGA CAGCGGAACACCTCCATATAATATACCCCCACCACCACCAGATTTCACCCCAAGCTCCAT TTCCATTAAACTTTTTCTTATATCCAAAAAAAAAAA |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| CTGTTTAGATATAACAGTCCTTGGACTGCGGGAGCCTGAGAGTCCGGTGGACCAGGCTGT GGTGTAGTATAAAGGCGGCGCCCAGAAGAAGGGGCGGGGCGTGGGAGAAGGCTCCCGGCC CGCCCCGCCATGTGGCACCCGCTGGTCCTGCTGCTGCTGCTCCCTTCTGCCTCGTTGCCC GCCTCCACTGCAGCCCCGATCCGCGATGGTGACGCCCAGGAGAGCTCCTCGGGTTTTCTA GGCCTCCGCAGTCTACTCCAAGGCTTCACCCGGCTTTTTCTGAAAGATGACCTTCTGCGG GGCATGGACAGCTTCTTCTCTGCCCCAATGGACTTCCGGGGCCTCCCCAGGAACTACCAC CAAGAAGAGAACCAGGAGCGCAGGCTGGGGAACAATACTCTCTCCAGCCACCTCCAGATT GACAAGGTGACCGACAACAAGACAGGAGAGGTGCTGATCTCTGAGAAGGTGGTAGCATCC ATTGATCCAGAAGAGAGGAGCTTGGAGGGTAACTGGAAGGTACCCAAGATAGAGGAGAAG GAGGCCCTGGCGCCTGTCCCGAAGGCCGTGGACAGCTTCCACCCGGAACCCCATCCCCGA GTAGCCTTCTGGATCATGAAACTGCCACGGCGGAGGTCCCACCAGGATGCTCAGGAGGGC AGCCGATGGCTTAGTGAGAAGCGACACCGCCTGCAGGCCATCCGGGATGGGCTCCGAGAG GGGACCCACGAGGATGTCCTCGAAGACAGGACCCAGAGCCCCTCCCATGCCAAGCTGTCC GCTCGCAAGACCCACTTCCTTTATATCCTCAGACCTTCCCAGCAGTTATAGGAGCGAGGA CAGCGGAACACCTCCATATAATATACCCCCACCACCACCAGATTTCACCCCAAGCTCCAT TTCCATTAAACTTTTTCTTATATCCAAAAAAAAAAA |
| Coded protein: 1 entry(ies) | More info |
| Aligned organism(s): 30 entry(ies) | More info |
| Aligned organism(s): 30 entry(ies) | Help | Less info |
| 109-286, gnl|bosTau2|chr18 (48415384-48415561) | |
| 109-286, gnl|canFam2|chr1 (110001079-110000903) | |
| 109-286, gnl|Hg17|chr19 (54559649-54559824) | |
| 109-286, gnl|hg17|chr20 (29325613-29325788) | |
| 109-286, gnl|mm7|chr7 (41387316-41387129) | |
| 109-286, gnl|Mm7|chr7 (41387300-41387128) | |
| 109-286, gnl|panTro1|chr21 (31019071-31019246) | |
| 109-286, gnl|rheMac2|chr10 (33280456-33280281) | |
| 109-286, gnl|rn3|chr1 (95767639-95767452) | |
| 518-848, gnl|bosTau2|chr18 (48419101-48419431) | |
| 518-848, gnl|canFam2|chr1 (109997764-109997443) | |
| 518-848, gnl|canFam2|chr1 (109997782-109997362) | |
| 518-848, gnl|hg17|chr19 (54569773-54570196) | |
| 518-848, gnl|Hg17|chr19 (54569784-54570114) | |
| 518-848, gnl|hg17|chr20 (29326025-29326346) | |
| 518-848, gnl|loxAfr1|scaffold_7655 (79975-79654) | |
| 518-848, gnl|loxAfr1|scaffold_7655 (79992-79580) | |
| 518-848, gnl|mm7|chr7 (41383624-41383308) | |
| 518-848, gnl|mm7|chr7 (41383641-41383246) | |
| 518-848, gnl|Mm7|chr7 (41383628-41383307) | |
| 518-848, gnl|monDom2|scaffold_105 (4359316-4359613) | |
| 518-848, gnl|monDom2|scaffold_105 (4359298-4359716) | |
| 518-848, gnl|oryCun1|scaffold_81755 (157-478) | |
| 518-848, gnl|oryCun1|scaffold_81755 (131-556) | |
| 518-848, gnl|panTro1|chr20 (51931582-51932005) | |
| 518-848, gnl|panTro1|chr21 (31019483-31019804) | |
| 518-848, gnl|rheMac2|chr10 (33280045-33279734) | |
| 518-848, gnl|rheMac2|chr19 (55624932-55625354) | |
| 518-848, gnl|rn3|chr1 (95763287-95762969) | |
| 518-848, gnl|rn3|chr1 (95763304-95762897) |
| Aligned organism(s): 30 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 109-286, gnl|bosTau2|chr18 (48415384-48415561) | |
| 109-286, gnl|canFam2|chr1 (110001079-110000903) | |
| 109-286, gnl|Hg17|chr19 (54559649-54559824) | |
| 109-286, gnl|hg17|chr20 (29325613-29325788) | |
| 109-286, gnl|mm7|chr7 (41387316-41387129) | |
| 109-286, gnl|Mm7|chr7 (41387300-41387128) | |
| 109-286, gnl|panTro1|chr21 (31019071-31019246) | |
| 109-286, gnl|rheMac2|chr10 (33280456-33280281) | |
| 109-286, gnl|rn3|chr1 (95767639-95767452) | |
| 518-848, gnl|bosTau2|chr18 (48419101-48419431) | |
| 518-848, gnl|canFam2|chr1 (109997764-109997443) | |
| 518-848, gnl|canFam2|chr1 (109997782-109997362) | |
| 518-848, gnl|hg17|chr19 (54569773-54570196) | |
| 518-848, gnl|Hg17|chr19 (54569784-54570114) | |
| 518-848, gnl|hg17|chr20 (29326025-29326346) | |
| 518-848, gnl|loxAfr1|scaffold_7655 (79975-79654) | |
| 518-848, gnl|loxAfr1|scaffold_7655 (79992-79580) | |
| 518-848, gnl|mm7|chr7 (41383624-41383308) | |
| 518-848, gnl|mm7|chr7 (41383641-41383246) | |
| 518-848, gnl|Mm7|chr7 (41383628-41383307) | |
| 518-848, gnl|monDom2|scaffold_105 (4359316-4359613) | |
| 518-848, gnl|monDom2|scaffold_105 (4359298-4359716) | |
| 518-848, gnl|oryCun1|scaffold_81755 (157-478) | |
| 518-848, gnl|oryCun1|scaffold_81755 (131-556) | |
| 518-848, gnl|panTro1|chr20 (51931582-51932005) | |
| 518-848, gnl|panTro1|chr21 (31019483-31019804) | |
| 518-848, gnl|rheMac2|chr10 (33280045-33279734) | |
| 518-848, gnl|rheMac2|chr19 (55624932-55625354) | |
| 518-848, gnl|rn3|chr1 (95763287-95762969) | |
| 518-848, gnl|rn3|chr1 (95763304-95762897) |
| Expressed library(ies): 6 entry(ies) | More info |
| Expressed library(ies): 6 entry(ies) | Help | Less info |
| cte (0.58548) | |
| tes (0.207814) | |
| fty (0.17584) | |
| cut (0.169924) | |
| pla (0.133672) | |
| ebs (0.118301) |
| Expressed library(ies): 6 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| cte (0.58548) | |
| tes (0.207814) | |
| fty (0.17584) | |
| cut (0.169924) | |
| pla (0.133672) | |
| ebs (0.118301) |