Non-Coding RNA Search

Ss1.1-Pig4-TMW8040O01.3

Sequence:


               
               TGTCATAGGATAAGCTGTGTTAGCACTTCCTCAGGAAATGAGATTGATCTTTACAATAGC
CAATAACATTTGCACTTTATTAATGCCTGTATATAAATATGGAATAGCTATGTTTTATAT
ATAATCTATATATATCTATATCTATCTATACAGCCATACTTTGGAAAGAGGTGAGGGGAA
AAAGGTCACAGATACCCAGGAAATGGGTTTGATGGGCAGGCTCAGCCCTGAACGCAGAAG
GAAGGGCTCTGTGACCGCCTCAGCACTTGGCAATCATGTGTGTGCTGGTCCTTTGAGCAC
TGGGGAGGGAGGCTTTGTCTTTGGAGAGGGGCTTCATGTCTCAGAGCCTGCTATGGCCAC
GATGCACTTGCTTTTGCAAATTAATAATCCCCTGCGCTGGGTCCCTTTCTGGCCGCGGAG
CTAATTGGAGTTGCACTGTTTGGAGACCTGACCCTGGGGACCCTGTGTGCCATCATCTCT
CCTGGACTTTTCACTCGAGCTTCGCCCCCACCTCTGGTTTATGAACCACCTTCCTCATTA
GCTCAATAACTTTGCCCGATCTAACTGCTTAAACCTTGTAAACCCCATCTTCTACCTTCA
AAGCTGCAGGAAAATCAGGACGCATTTCCCCCAACTGTGAAATTGCCACATCTACTAATG
AGAAATTGTTCCTTTAGAGAAAAAAAAAATACTCTTCCTATCCCTGTTAGTGTTCTCTTT
CCTAAAAGGGAACAGATCTGCCCTCTGGATTCTTTATTTTAGTTGTTCTTCCCTTGGTTT
CAGTCTCCAGTTTTCTATGCAAACACCAGTATGTTCCATCCTTCTGGGCTCTGGGGGGCT
CAAATGCATTCTGGCCAAGTGGTATTTGAGCAGCACAGCACTGCCACAGTTGGGAGTGTT
TCCTCAGGCACTGTGAATGTGTGTTTTGCTTGGCCAAGATAGCATTTAACAAAACCAAGC
CACTTTTTAAATATTTGGAGATTTTGCAACAACAACAACAACAAAATCTGGATCCCCAAG
TAAGAGTAGATAGCAGGGGGTTTCCAGTTCTCTCTGGCCCACATCCTTCACAGATGAAGG
TGTGGACACCCTTAGAAAGCTGCTCTCTTCCCCCTGTGAACGTTTGCCCACCCCCACCCC
AGTCTGAGAATTAAACCTGCCCCCTAACCAAGGTCCCCTGTGAGAAGTGGACATTCGTGC
AGTCATTCTCTGGCTATGTAAAAGGACTTCAGTTCCCTTCCTGGGGTTAAGATTTGAAGT
TGGCCTTTTGGGGGACCAGTGGAGACCTCCTTTGGGCAGTTCCCTTTAAACCAATTCTCT
CTTGCTTGTATATTAACAGCCTTCCTGTCTGCATTTGGGAGGCAAGCCCTTTACTCCAAG
AAGCTTTGGTCATGGTTACTGGTTTCTCCAGCACACCTGCCCTTCCAAGCTTTGCCGAAT
TTGAATGAGGGACACAGGAGTCCCATTTGCAATTAGGAATTCTGTGTCCATAAGGACAAG
AACAAAGACTGAGCTTTAATACTCCATAGGAAACTTGTTAATCCACAAACAAGTGTTAAT
GCTGCAAATAACAGTATCTTTTAAAGAAATGTTTTAAAGCTTATTATCAGCCAAATAGGA
ATATTGGAGCGTGACTGGCAGTGATCAGATCAGCTCTGCTTGGGTTTTGGAAGGTCTCAT
CTCATTGGGGTTTTAGCAGACATGCTGAAACTTGGGATTAGGTGGAACTTTTTGGAACGC
TGCTTCGGTAGAGGTGGGCTGAGAGAACAGTTAAGACAGCTTGACCACAATGTCATGGAA
GTGCCCAGAAATGCTGTGCACTTTAGGGCTGTTGATGCCATCCCAATAGCTATTGCTCAC
TGACCTCTAGTGGTGAATTTCCAGAATACTAGTTTGTTAATGGGATCTTCCAAGATTCAG
AAGAGCTTAGCACTTCTGGGTCATCATCAGCATAAACTGGAATCTAGTGTCAAATGATAC
TGTGGCTTGCTTTATGTTATTTTTTTTTCCTTATTCAAGAAAAAGACCAAGGAATAACAT
TCTGTACTTCCTAAAAATACTGACTTTTTCACTACTATACTTAAAGGGAAAGTTTTATTC
TTTTATGAACACTTCATACTCATGTATTAAAATAGGAATGTGAATCCTATATACTCTTTT
TATATCAAATGTCTCAAGCACTTATTTTCATTCTATGCATTGTTTGTCTTTTATATAAAT
AAAGCAAAAATACTCAGGTCAAAAAAAAAAAAAAAAAAAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TGTCATAGGATAAGCTGTGTTAGCACTTCCTCAGGAAATGAGATTGATCTTTACAATAGC
CAATAACATTTGCACTTTATTAATGCCTGTATATAAATATGGAATAGCTATGTTTTATAT
ATAATCTATATATATCTATATCTATCTATACAGCCATACTTTGGAAAGAGGTGAGGGGAA
AAAGGTCACAGATACCCAGGAAATGGGTTTGATGGGCAGGCTCAGCCCTGAACGCAGAAG
GAAGGGCTCTGTGACCGCCTCAGCACTTGGCAATCATGTGTGTGCTGGTCCTTTGAGCAC
TGGGGAGGGAGGCTTTGTCTTTGGAGAGGGGCTTCATGTCTCAGAGCCTGCTATGGCCAC
GATGCACTTGCTTTTGCAAATTAATAATCCCCTGCGCTGGGTCCCTTTCTGGCCGCGGAG
CTAATTGGAGTTGCACTGTTTGGAGACCTGACCCTGGGGACCCTGTGTGCCATCATCTCT
CCTGGACTTTTCACTCGAGCTTCGCCCCCACCTCTGGTTTATGAACCACCTTCCTCATTA
GCTCAATAACTTTGCCCGATCTAACTGCTTAAACCTTGTAAACCCCATCTTCTACCTTCA
AAGCTGCAGGAAAATCAGGACGCATTTCCCCCAACTGTGAAATTGCCACATCTACTAATG
AGAAATTGTTCCTTTAGAGAAAAAAAAAATACTCTTCCTATCCCTGTTAGTGTTCTCTTT
CCTAAAAGGGAACAGATCTGCCCTCTGGATTCTTTATTTTAGTTGTTCTTCCCTTGGTTT
CAGTCTCCAGTTTTCTATGCAAACACCAGTATGTTCCATCCTTCTGGGCTCTGGGGGGCT
CAAATGCATTCTGGCCAAGTGGTATTTGAGCAGCACAGCACTGCCACAGTTGGGAGTGTT
TCCTCAGGCACTGTGAATGTGTGTTTTGCTTGGCCAAGATAGCATTTAACAAAACCAAGC
CACTTTTTAAATATTTGGAGATTTTGCAACAACAACAACAACAAAATCTGGATCCCCAAG
TAAGAGTAGATAGCAGGGGGTTTCCAGTTCTCTCTGGCCCACATCCTTCACAGATGAAGG
TGTGGACACCCTTAGAAAGCTGCTCTCTTCCCCCTGTGAACGTTTGCCCACCCCCACCCC
AGTCTGAGAATTAAACCTGCCCCCTAACCAAGGTCCCCTGTGAGAAGTGGACATTCGTGC
AGTCATTCTCTGGCTATGTAAAAGGACTTCAGTTCCCTTCCTGGGGTTAAGATTTGAAGT
TGGCCTTTTGGGGGACCAGTGGAGACCTCCTTTGGGCAGTTCCCTTTAAACCAATTCTCT
CTTGCTTGTATATTAACAGCCTTCCTGTCTGCATTTGGGAGGCAAGCCCTTTACTCCAAG
AAGCTTTGGTCATGGTTACTGGTTTCTCCAGCACACCTGCCCTTCCAAGCTTTGCCGAAT
TTGAATGAGGGACACAGGAGTCCCATTTGCAATTAGGAATTCTGTGTCCATAAGGACAAG
AACAAAGACTGAGCTTTAATACTCCATAGGAAACTTGTTAATCCACAAACAAGTGTTAAT
GCTGCAAATAACAGTATCTTTTAAAGAAATGTTTTAAAGCTTATTATCAGCCAAATAGGA
ATATTGGAGCGTGACTGGCAGTGATCAGATCAGCTCTGCTTGGGTTTTGGAAGGTCTCAT
CTCATTGGGGTTTTAGCAGACATGCTGAAACTTGGGATTAGGTGGAACTTTTTGGAACGC
TGCTTCGGTAGAGGTGGGCTGAGAGAACAGTTAAGACAGCTTGACCACAATGTCATGGAA
GTGCCCAGAAATGCTGTGCACTTTAGGGCTGTTGATGCCATCCCAATAGCTATTGCTCAC
TGACCTCTAGTGGTGAATTTCCAGAATACTAGTTTGTTAATGGGATCTTCCAAGATTCAG
AAGAGCTTAGCACTTCTGGGTCATCATCAGCATAAACTGGAATCTAGTGTCAAATGATAC
TGTGGCTTGCTTTATGTTATTTTTTTTTCCTTATTCAAGAAAAAGACCAAGGAATAACAT
TCTGTACTTCCTAAAAATACTGACTTTTTCACTACTATACTTAAAGGGAAAGTTTTATTC
TTTTATGAACACTTCATACTCATGTATTAAAATAGGAATGTGAATCCTATATACTCTTTT
TATATCAAATGTCTCAAGCACTTATTTTCATTCTATGCATTGTTTGTCTTTTATATAAAT
AAAGCAAAAATACTCAGGTCAAAAAAAAAAAAAAAAAAAAAAAAAAAA

Predicted RNA structure(s): 1 entry(ies)

More info

Predicted RNA structure(s): 1 entry(ies)

Help | Less info


               
               1840-1958, - strand, RNAz p=0.513947

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               1840-1958, - strand, RNAz p=0.513947

Aligned organism(s): 6 entry(ies)

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Aligned organism(s): 6 entry(ies)

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               1-229, gnl|bosTau2|chr22 (3291756-3291537)
               

               
               1-229, gnl|Hg17|chr3 (30708292-30708529)
               

               
               1-229, gnl|Mm7|chr9 (115762478-115762209)
               


               
               257-2223, gnl|bosTau2|chr22 (3291547-3289600)
               

               
               257-2223, gnl|Hg17|chr3 (30708519-30710564)
               

               
               257-2223, gnl|Mm7|chr9 (115762219-115760058)

Aligned organism(s): 6 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-229, gnl|bosTau2|chr22 (3291756-3291537)
               

               
               1-229, gnl|Hg17|chr3 (30708292-30708529)
               

               
               1-229, gnl|Mm7|chr9 (115762478-115762209)
               


               
               257-2223, gnl|bosTau2|chr22 (3291547-3289600)
               

               
               257-2223, gnl|Hg17|chr3 (30708519-30710564)
               

               
               257-2223, gnl|Mm7|chr9 (115762219-115760058)

Expressed library(ies): 52 entry(ies)

More info

Expressed library(ies): 52 entry(ies)

Help | Less info


               
               fat (1.17942)
               

               
               liv (1.17027)
               

               
               cty (1.14488)
               

               
               bla (1.11912)
               

               
               cmu (0.931966)
               

               
               ski (0.880411)
               

               
               rec (0.865351)
               

               
               kid (0.778412)
               

               
               tra (0.738552)
               

               
               aor (0.585823)
               

               
               lnt (0.569233)
               

               
               csk (0.562984)
               

               
               eru (0.480192)
               

               
               lin (0.436808)
               

               
               vin (0.332557)
               

               
               sme (0.305437)
               

               
               spl (0.286369)
               

               
               fce (0.271592)
               

               
               ste (0.270416)
               

               
               cov (0.264306)
               

               
               eep (0.245128)
               

               
               cly (0.241284)
               

               
               med (0.232504)
               

               
               cbl (0.229595)
               

               
               spc (0.226732)
               

               
               tes (0.207814)
               

               
               hea (0.204499)
               

               
               ldo (0.194005)
               

               
               nlu (0.191681)
               

               
               nep (0.183925)
               

               
               sag (0.182715)
               

               
               sto (0.179824)
               

               
               gul (0.177588)
               

               
               fty (0.17584)
               

               
               ill (0.175593)
               

               
               sin (0.174948)
               

               
               fhi (0.169578)
               

               
               cki (0.165235)
               

               
               nco (0.161734)
               

               
               csp (0.161186)
               

               
               mga (0.160205)
               

               
               fco (0.157208)
               

               
               isp (0.150376)
               

               
               bfe (0.149858)
               

               
               pty (0.142714)
               

               
               hlv (0.139256)
               

               
               ute (0.132784)
               

               
               ova (0.129132)
               

               
               sug (0.127291)
               

               
               ese (0.126502)
               

               
               clu (0.119646)
               

               
               jca (0.11396)

Expressed library(ies): 52 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               fat (1.17942)
               

               
               liv (1.17027)
               

               
               cty (1.14488)
               

               
               bla (1.11912)
               

               
               cmu (0.931966)
               

               
               ski (0.880411)
               

               
               rec (0.865351)
               

               
               kid (0.778412)
               

               
               tra (0.738552)
               

               
               aor (0.585823)
               

               
               lnt (0.569233)
               

               
               csk (0.562984)
               

               
               eru (0.480192)
               

               
               lin (0.436808)
               

               
               vin (0.332557)
               

               
               sme (0.305437)
               

               
               spl (0.286369)
               

               
               fce (0.271592)
               

               
               ste (0.270416)
               

               
               cov (0.264306)
               

               
               eep (0.245128)
               

               
               cly (0.241284)
               

               
               med (0.232504)
               

               
               cbl (0.229595)
               

               
               spc (0.226732)
               

               
               tes (0.207814)
               

               
               hea (0.204499)
               

               
               ldo (0.194005)
               

               
               nlu (0.191681)
               

               
               nep (0.183925)
               

               
               sag (0.182715)
               

               
               sto (0.179824)
               

               
               gul (0.177588)
               

               
               fty (0.17584)
               

               
               ill (0.175593)
               

               
               sin (0.174948)
               

               
               fhi (0.169578)
               

               
               cki (0.165235)
               

               
               nco (0.161734)
               

               
               csp (0.161186)
               

               
               mga (0.160205)
               

               
               fco (0.157208)
               

               
               isp (0.150376)
               

               
               bfe (0.149858)
               

               
               pty (0.142714)
               

               
               hlv (0.139256)
               

               
               ute (0.132784)
               

               
               ova (0.129132)
               

               
               sug (0.127291)
               

               
               ese (0.126502)
               

               
               clu (0.119646)
               

               
               jca (0.11396)

	1-229, gnl\|bosTau2\|chr22 (3291756-3291537)
	1-229, gnl\|Hg17\|chr3 (30708292-30708529)
	1-229, gnl\|Mm7\|chr9 (115762478-115762209)

	257-2223, gnl\|bosTau2\|chr22 (3291547-3289600)
	257-2223, gnl\|Hg17\|chr3 (30708519-30710564)
	257-2223, gnl\|Mm7\|chr9 (115762219-115760058)

	fat (1.17942)
	liv (1.17027)
	cty (1.14488)
	bla (1.11912)
	cmu (0.931966)
	ski (0.880411)
	rec (0.865351)
	kid (0.778412)
	tra (0.738552)
	aor (0.585823)
	lnt (0.569233)
	csk (0.562984)
	eru (0.480192)
	lin (0.436808)
	vin (0.332557)
	sme (0.305437)
	spl (0.286369)
	fce (0.271592)
	ste (0.270416)
	cov (0.264306)
	eep (0.245128)
	cly (0.241284)
	med (0.232504)
	cbl (0.229595)
	spc (0.226732)
	tes (0.207814)
	hea (0.204499)
	ldo (0.194005)
	nlu (0.191681)
	nep (0.183925)
	sag (0.182715)
	sto (0.179824)
	gul (0.177588)
	fty (0.17584)
	ill (0.175593)
	sin (0.174948)
	fhi (0.169578)
	cki (0.165235)
	nco (0.161734)
	csp (0.161186)
	mga (0.160205)
	fco (0.157208)
	isp (0.150376)
	bfe (0.149858)
	pty (0.142714)
	hlv (0.139256)
	ute (0.132784)
	ova (0.129132)
	sug (0.127291)
	ese (0.126502)
	clu (0.119646)
	jca (0.11396)