Non-Coding RNA Search

Ss1.1-Pig4-TMW8040O03.3

Sequence:


               
               AAATACAGTACAATATTTTAAAATAGACAAAATTGTTAAAAATAAAAACGTAGTAGACGT
GTGTAAGAAAACTTTGTAAAATAGTTCCGAGTCCTCCCCAGTAGCAACTTCTGGCATTCA
AGCAGGATTCCATTATGTAAATATCTGTAATGCATTTATAATAAGTTGTGTAGTTTGTTC
TGCATCCATACTACACTATTAGCTAAAGTCTCAGTGCCATCTCCTAATGAGGCTGACATT
TAAAAAATCTATATGGAATATCCTTGATAATTCAAGGAAATATCCCACCTGCCTAAGTTC
TAAACTGGGAAACATTCAGATTATACAAATGACATTTCAGGACTTTAAGTATGAAGATAA
TAGGAATTTTATCATTTGGCTTATTAAAATTGAGAGCATTTTTAGTTGATAATTCTATTT
CTAATTTTTTTATTCTTAACTGATTTTATAATTTTAAAGTAATCAATTTCTAATCATGAT
TTTGCCATAGTTATGCTAAGGAGTTGATCTCAAAGGCACAAAATATGAATTCTGCAAGAA
AGCTATTTTTTATTGTAGTTTGGATGGGTTAGGAAAAGTCTCCGTTTTTCACTCTCCTAA
GTCCTTCAGTGCATTTATCTTTTCATTTTATTATTTATGCAAGTTAAATTTCTTTGGTAA
CAGGAATTCTTGCAACTGTAAAATAAAACTACATAGATGTAAGAAGTCATGTAAACGGTT
AATGATCTTATTACCAAGGTTAGCAAAACTTTCATTGTAAATCAGTCTGTACTCAGCAAA
TAAAAATCATTATTAGTTGTATAAACACAAATTCCATTTTGACTTTCAGAATGTCACACT
ACTTCTGTACCTAGCATTTTGAGTCCTTATATTTGCAATGTTACACAAACTGTACTATTT
TCTTTTATGTGCAGTTTGCATGAGTAAACCATCAGAGAATAAATTCTATCTTTAAATTAT
AAAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               AAATACAGTACAATATTTTAAAATAGACAAAATTGTTAAAAATAAAAACGTAGTAGACGT
GTGTAAGAAAACTTTGTAAAATAGTTCCGAGTCCTCCCCAGTAGCAACTTCTGGCATTCA
AGCAGGATTCCATTATGTAAATATCTGTAATGCATTTATAATAAGTTGTGTAGTTTGTTC
TGCATCCATACTACACTATTAGCTAAAGTCTCAGTGCCATCTCCTAATGAGGCTGACATT
TAAAAAATCTATATGGAATATCCTTGATAATTCAAGGAAATATCCCACCTGCCTAAGTTC
TAAACTGGGAAACATTCAGATTATACAAATGACATTTCAGGACTTTAAGTATGAAGATAA
TAGGAATTTTATCATTTGGCTTATTAAAATTGAGAGCATTTTTAGTTGATAATTCTATTT
CTAATTTTTTTATTCTTAACTGATTTTATAATTTTAAAGTAATCAATTTCTAATCATGAT
TTTGCCATAGTTATGCTAAGGAGTTGATCTCAAAGGCACAAAATATGAATTCTGCAAGAA
AGCTATTTTTTATTGTAGTTTGGATGGGTTAGGAAAAGTCTCCGTTTTTCACTCTCCTAA
GTCCTTCAGTGCATTTATCTTTTCATTTTATTATTTATGCAAGTTAAATTTCTTTGGTAA
CAGGAATTCTTGCAACTGTAAAATAAAACTACATAGATGTAAGAAGTCATGTAAACGGTT
AATGATCTTATTACCAAGGTTAGCAAAACTTTCATTGTAAATCAGTCTGTACTCAGCAAA
TAAAAATCATTATTAGTTGTATAAACACAAATTCCATTTTGACTTTCAGAATGTCACACT
ACTTCTGTACCTAGCATTTTGAGTCCTTATATTTGCAATGTTACACAAACTGTACTATTT
TCTTTTATGTGCAGTTTGCATGAGTAAACCATCAGAGAATAAATTCTATCTTTAAATTAT
AAAAAAAAAAAA

Predicted RNA structure(s): 2 entry(ies)

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Predicted RNA structure(s): 2 entry(ies)

Help | Less info


               
               191-303, - strand, RNAz p=0.849345
               

               
               816-935, - strand, RNAz p=0.825703

Predicted RNA structure(s): 2 entry(ies)

Help | Less info

PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               191-303, - strand, RNAz p=0.849345
               

               
               816-935, - strand, RNAz p=0.825703

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               1-960, gnl|bosTau2|chr2 (15070130-15069174)
               

               
               1-960, gnl|Hg17|chr2 (175763448-175762493)
               

               
               1-960, gnl|Mm7|chr2 (73661186-73660233)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-960, gnl|bosTau2|chr2 (15070130-15069174)
               

               
               1-960, gnl|Hg17|chr2 (175763448-175762493)
               

               
               1-960, gnl|Mm7|chr2 (73661186-73660233)

Expressed library(ies): 17 entry(ies)

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Expressed library(ies): 17 entry(ies)

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               ret (0.514933)
               

               
               mgp (0.461361)
               

               
               fco (0.314416)
               

               
               liv (0.292569)
               

               
               fcc (0.197785)
               

               
               mgm (0.180343)
               

               
               eye (0.170503)
               

               
               bfe (0.149858)
               

               
               ski (0.146735)
               

               
               pty (0.142714)
               

               
               lnt (0.142308)
               

               
               kid (0.129735)
               

               
               ova (0.129132)
               

               
               ese (0.126502)
               

               
               tra (0.123092)
               

               
               cly (0.120642)
               

               
               ecc (0.115035)

Expressed library(ies): 17 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               ret (0.514933)
               

               
               mgp (0.461361)
               

               
               fco (0.314416)
               

               
               liv (0.292569)
               

               
               fcc (0.197785)
               

               
               mgm (0.180343)
               

               
               eye (0.170503)
               

               
               bfe (0.149858)
               

               
               ski (0.146735)
               

               
               pty (0.142714)
               

               
               lnt (0.142308)
               

               
               kid (0.129735)
               

               
               ova (0.129132)
               

               
               ese (0.126502)
               

               
               tra (0.123092)
               

               
               cly (0.120642)
               

               
               ecc (0.115035)

	191-303, - strand, RNAz p=0.849345
	816-935, - strand, RNAz p=0.825703

	1-960, gnl\|bosTau2\|chr2 (15070130-15069174)
	1-960, gnl\|Hg17\|chr2 (175763448-175762493)
	1-960, gnl\|Mm7\|chr2 (73661186-73660233)

	ret (0.514933)
	mgp (0.461361)
	fco (0.314416)
	liv (0.292569)
	fcc (0.197785)
	mgm (0.180343)
	eye (0.170503)
	bfe (0.149858)
	ski (0.146735)
	pty (0.142714)
	lnt (0.142308)
	kid (0.129735)
	ova (0.129132)
	ese (0.126502)
	tra (0.123092)
	cly (0.120642)
	ecc (0.115035)