Non-Coding RNA Search

Ss1.1-Pig4-TMW8040O04.5

Sequence:


               
               CGGCCCTGGGAGCGCCCGGGCGGGAGCTGGCGGCTGGGCGCCGAGAGGCGCGGAGAAGCG
GAGTGGGCCTGCGGAGGGCGAGGAACAGAGCCAGAGCCGTGGCGGCGAAGCTGCGGGGTC
CCTCATGATGAAAGATTTGGGGACACTTCTCTCTCCTTTGTGTAGTTGGTAGTTTGGGTT
GTGAAGAGATGGCTGACAGTGTCAAAACCTTTCTTCAGGACCTTGCCAGGGGAATCAAAG
ACTCCATCTGGGGAATTTGTACCATCTCAAAGCTAGATGCTCGAATTCAACAAAAGAGAG
AGGAGCAGCGTCGAAGAAGGGCAAGCAGTGTTCTGGCTCAGAGGAGAGCCCAGAGTATAG
AGAGGAAGCAGGAGAGTGAACCACGTATTGTTAGTAGAATTTTTCAGTGCTGCGCTTGGA
ATGGCGGAGTATTCTGGTTCAGTCTCCTCTTGTTTTATCGAGTGTTTATTCCTGTGCTTC
AGTCAGTAACAGCCCAAATTATTGGTGATCCGTCACTACATGGGGATGTTTGGTCCTGGC
TGGAATTCTTCCTCACATCAATTTTCAGTGCTCTTTGGGTGCTCCCCCTGTTTGTGCTTA
GCAAAGTTGTGAATGCAATTTGGTTTCAGGATATAGCTGATCTGGCATTTGAGGTATCAG
GGAGGAAGCCTCATCCATTCCCTAGTGTCAGCAAAATAATTGCTGACATGCTCTTCAACC
TTTTGCTACAGGCTCTTTTCCTCCTCCAGGGGATGTTTGTGAGTCTCTTTCCCATCCATC
TTGTTGGTCAGCTGGTTAGTCTCCTGCATATGTCTCTTCTCTACTCACTATACTGCTTCG
AATATCGTTGGTTCAATAAAGGAATTGAAATGCACCAGCGGTTGTCAAACATAGAAAGGA
ACTGGCCTTACTACTTTGGATTTGGTTTGCCCTTGGCTTTCCTCACAGCAATGCAGTCCT
CCTACATTGTCAGTGGCTGCCTCTTCTCTATCCTCTTTCCTTTATTCATTATCAGCGCCA
ATGAAGCAAAGA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CGGCCCTGGGAGCGCCCGGGCGGGAGCTGGCGGCTGGGCGCCGAGAGGCGCGGAGAAGCG
GAGTGGGCCTGCGGAGGGCGAGGAACAGAGCCAGAGCCGTGGCGGCGAAGCTGCGGGGTC
CCTCATGATGAAAGATTTGGGGACACTTCTCTCTCCTTTGTGTAGTTGGTAGTTTGGGTT
GTGAAGAGATGGCTGACAGTGTCAAAACCTTTCTTCAGGACCTTGCCAGGGGAATCAAAG
ACTCCATCTGGGGAATTTGTACCATCTCAAAGCTAGATGCTCGAATTCAACAAAAGAGAG
AGGAGCAGCGTCGAAGAAGGGCAAGCAGTGTTCTGGCTCAGAGGAGAGCCCAGAGTATAG
AGAGGAAGCAGGAGAGTGAACCACGTATTGTTAGTAGAATTTTTCAGTGCTGCGCTTGGA
ATGGCGGAGTATTCTGGTTCAGTCTCCTCTTGTTTTATCGAGTGTTTATTCCTGTGCTTC
AGTCAGTAACAGCCCAAATTATTGGTGATCCGTCACTACATGGGGATGTTTGGTCCTGGC
TGGAATTCTTCCTCACATCAATTTTCAGTGCTCTTTGGGTGCTCCCCCTGTTTGTGCTTA
GCAAAGTTGTGAATGCAATTTGGTTTCAGGATATAGCTGATCTGGCATTTGAGGTATCAG
GGAGGAAGCCTCATCCATTCCCTAGTGTCAGCAAAATAATTGCTGACATGCTCTTCAACC
TTTTGCTACAGGCTCTTTTCCTCCTCCAGGGGATGTTTGTGAGTCTCTTTCCCATCCATC
TTGTTGGTCAGCTGGTTAGTCTCCTGCATATGTCTCTTCTCTACTCACTATACTGCTTCG
AATATCGTTGGTTCAATAAAGGAATTGAAATGCACCAGCGGTTGTCAAACATAGAAAGGA
ACTGGCCTTACTACTTTGGATTTGGTTTGCCCTTGGCTTTCCTCACAGCAATGCAGTCCT
CCTACATTGTCAGTGGCTGCCTCTTCTCTATCCTCTTTCCTTTATTCATTATCAGCGCCA
ATGAAGCAAAGA

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               Q59EJ1_HUMAN

Coded protein: 1 entry(ies)

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Protein identifier


               
               Q59EJ1_HUMAN

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               624-753, - strand, RNAz p=0.995401

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               624-753, - strand, RNAz p=0.995401

Aligned organism(s): 19 entry(ies)

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Aligned organism(s): 19 entry(ies)

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               2-340, gnl|bosTau2|chr18 (39479337-39478995)
               

               
               2-340, gnl|Hg17|chr3 (44542427-44542102)
               


               
               624-753, gnl|bosTau2|chr29 (22497433-22497304)
               

               
               624-753, gnl|canFam2|chr5 (33196935-33197063)
               

               
               624-753, gnl|dasNov1|scaffold_195644 (1884-2009)
               

               
               624-753, gnl|echTel1|scaffold_246773 (3052-2924)
               

               
               624-753, gnl|Hg17|chr11 (124954049-124954178)
               

               
               624-753, gnl|hg17|chr17 (3951532-3951665)
               

               
               624-753, gnl|loxAfr1|scaffold_101096 (2307-2188)
               

               
               624-753, gnl|mm7|chr11 (72921183-72921069)
               

               
               624-753, gnl|Mm7|chr9 (36712066-36711937)
               

               
               624-753, gnl|monDom2|scaffold_15 (11531279-11531158)
               

               
               624-753, gnl|oryCun1|scaffold_191265 (60697-60815)
               

               
               624-753, gnl|panTro1|chr19_random (19330283-19330150)
               

               
               624-753, gnl|rheMac2|chr16 (3829292-3829425)
               

               
               624-753, gnl|rn3|chr10 (59745162-59745056)
               


               
               819-1032, gnl|bosTau2|chr18 (39477997-39477802)
               

               
               819-1032, gnl|Hg17|chr3 (44541625-44541414)
               

               
               819-1032, gnl|Mm7|chr9 (36709254-36708765)

Aligned organism(s): 19 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               2-340, gnl|bosTau2|chr18 (39479337-39478995)
               

               
               2-340, gnl|Hg17|chr3 (44542427-44542102)
               


               
               624-753, gnl|bosTau2|chr29 (22497433-22497304)
               

               
               624-753, gnl|canFam2|chr5 (33196935-33197063)
               

               
               624-753, gnl|dasNov1|scaffold_195644 (1884-2009)
               

               
               624-753, gnl|echTel1|scaffold_246773 (3052-2924)
               

               
               624-753, gnl|Hg17|chr11 (124954049-124954178)
               

               
               624-753, gnl|hg17|chr17 (3951532-3951665)
               

               
               624-753, gnl|loxAfr1|scaffold_101096 (2307-2188)
               

               
               624-753, gnl|mm7|chr11 (72921183-72921069)
               

               
               624-753, gnl|Mm7|chr9 (36712066-36711937)
               

               
               624-753, gnl|monDom2|scaffold_15 (11531279-11531158)
               

               
               624-753, gnl|oryCun1|scaffold_191265 (60697-60815)
               

               
               624-753, gnl|panTro1|chr19_random (19330283-19330150)
               

               
               624-753, gnl|rheMac2|chr16 (3829292-3829425)
               

               
               624-753, gnl|rn3|chr10 (59745162-59745056)
               


               
               819-1032, gnl|bosTau2|chr18 (39477997-39477802)
               

               
               819-1032, gnl|Hg17|chr3 (44541625-44541414)
               

               
               819-1032, gnl|Mm7|chr9 (36709254-36708765)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               nmm (0.265604)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               nmm (0.265604)

	2-340, gnl\|bosTau2\|chr18 (39479337-39478995)
	2-340, gnl\|Hg17\|chr3 (44542427-44542102)

	624-753, gnl\|bosTau2\|chr29 (22497433-22497304)
	624-753, gnl\|canFam2\|chr5 (33196935-33197063)
	624-753, gnl\|dasNov1\|scaffold_195644 (1884-2009)
	624-753, gnl\|echTel1\|scaffold_246773 (3052-2924)
	624-753, gnl\|Hg17\|chr11 (124954049-124954178)
	624-753, gnl\|hg17\|chr17 (3951532-3951665)
	624-753, gnl\|loxAfr1\|scaffold_101096 (2307-2188)
	624-753, gnl\|mm7\|chr11 (72921183-72921069)
	624-753, gnl\|Mm7\|chr9 (36712066-36711937)
	624-753, gnl\|monDom2\|scaffold_15 (11531279-11531158)
	624-753, gnl\|oryCun1\|scaffold_191265 (60697-60815)
	624-753, gnl\|panTro1\|chr19_random (19330283-19330150)
	624-753, gnl\|rheMac2\|chr16 (3829292-3829425)
	624-753, gnl\|rn3\|chr10 (59745162-59745056)

	819-1032, gnl\|bosTau2\|chr18 (39477997-39477802)
	819-1032, gnl\|Hg17\|chr3 (44541625-44541414)
	819-1032, gnl\|Mm7\|chr9 (36709254-36708765)