Non-Coding RNA Search

Ss1.1-Pig4-TMW8040O22.3

Sequence:


               
               TCCCCCCCCACCGCCAGCCCCACTGGGCTTGTTCTTCCTGCCTTGGTGCCTTCTCAGTCT
CCCCTCCCCCAGCCCTCCTGGGGCTCTGTGGTGCCACCTTCATGGATTCCGCCTCTTCTG
GCTGCTCCACTGGCCAGAGGGCCGTGAGTGCACACAGCCCTTCCTCTTGCTTGGGCTCTC
TCTGGTCGGTGCAGACTTATTCAGAGCAGACACGTCATCGTCTCTGTCCCTTGGAGTGTG
CACAGGAACCGACACGTAGATGCTTTCAGCCTGGTAAGGGTAGGGCAGAGCGCCAGCCTG
TGGAGCACAGAGGGTGGGCATGGAGGAAACGTTCCCGGCATTTGGAGACAGCTGGAAACT
GTCCATGCTGATTGTTGTGGTTCTCAAGCCTCTAACTGAGTTGTGAAAATTGCCTTTTCT
TTGCTCTATACAATATCTGCTATACTGTGGGTCATTGGACGAGGTCTGAAGACCAGGTCC
GAAGTGTCTGAGGAGCCGTGGCAAGCAAGCCACACTAAAGATGTGACTTGGGGAGACTTA
ACAAACTAGAGATTTTTCTTGACGCCACTCATGAGCTGTTTTATTTCTCTAGCAGAATCA
TTTTTTTTTTTTTCTATGTGTGGTATTAATGTGTATGTGCTTCAGTGATGGGAAAACTTG
AAAATTCCAAAATCCTTATTACTTCCCTATTTGAAAGGCTGGTTAAGTAGGGTGTGTGTG
TGGATGTGCATGTGTGCAAGTGATGTATTTATTACATTATTTTGAAGGAGTAACTATCTG
TTATGCAGATATACATTAGGTACAGCCAAATTGAATTGTTTCCGTTTGGCAAGGAAGGTA
GGATTCCCGAAACTCAGGCCACAACCAGTAGGTTGGACATGACCAATTGAAGCGTTATGA
AATGTCTTTTTGTTGCTCCTGTTATTTCTGTCTTGGATTCATTGTCTCATCCTTTAATGA
TTATTAAAGTCTGTGCCTGAAAGTTTATTTTGCTTAATTATGAAGTAGACTTGCATGTTT
ATATTTATGTAAAATATTTGCTATGTAAAGTTTTTTTGGTTTATTCTCTTAAAAGATATT
TAAGTAAAAAATGAAGGTCAGCAATAAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TCCCCCCCCACCGCCAGCCCCACTGGGCTTGTTCTTCCTGCCTTGGTGCCTTCTCAGTCT
CCCCTCCCCCAGCCCTCCTGGGGCTCTGTGGTGCCACCTTCATGGATTCCGCCTCTTCTG
GCTGCTCCACTGGCCAGAGGGCCGTGAGTGCACACAGCCCTTCCTCTTGCTTGGGCTCTC
TCTGGTCGGTGCAGACTTATTCAGAGCAGACACGTCATCGTCTCTGTCCCTTGGAGTGTG
CACAGGAACCGACACGTAGATGCTTTCAGCCTGGTAAGGGTAGGGCAGAGCGCCAGCCTG
TGGAGCACAGAGGGTGGGCATGGAGGAAACGTTCCCGGCATTTGGAGACAGCTGGAAACT
GTCCATGCTGATTGTTGTGGTTCTCAAGCCTCTAACTGAGTTGTGAAAATTGCCTTTTCT
TTGCTCTATACAATATCTGCTATACTGTGGGTCATTGGACGAGGTCTGAAGACCAGGTCC
GAAGTGTCTGAGGAGCCGTGGCAAGCAAGCCACACTAAAGATGTGACTTGGGGAGACTTA
ACAAACTAGAGATTTTTCTTGACGCCACTCATGAGCTGTTTTATTTCTCTAGCAGAATCA
TTTTTTTTTTTTTCTATGTGTGGTATTAATGTGTATGTGCTTCAGTGATGGGAAAACTTG
AAAATTCCAAAATCCTTATTACTTCCCTATTTGAAAGGCTGGTTAAGTAGGGTGTGTGTG
TGGATGTGCATGTGTGCAAGTGATGTATTTATTACATTATTTTGAAGGAGTAACTATCTG
TTATGCAGATATACATTAGGTACAGCCAAATTGAATTGTTTCCGTTTGGCAAGGAAGGTA
GGATTCCCGAAACTCAGGCCACAACCAGTAGGTTGGACATGACCAATTGAAGCGTTATGA
AATGTCTTTTTGTTGCTCCTGTTATTTCTGTCTTGGATTCATTGTCTCATCCTTTAATGA
TTATTAAAGTCTGTGCCTGAAAGTTTATTTTGCTTAATTATGAAGTAGACTTGCATGTTT
ATATTTATGTAAAATATTTGCTATGTAAAGTTTTTTTGGTTTATTCTCTTAAAAGATATT
TAAGTAAAAAATGAAGGTCAGCAATAAAAAAAAAAA

Aligned organism(s): 3 entry(ies)

More info

Aligned organism(s): 3 entry(ies)

Help | Less info


               
               481-1106, gnl|bosTau2|chr1 (98835740-98836356)
               

               
               481-1106, gnl|Hg17|chr3 (15458476-15459120)
               

               
               481-1106, gnl|Mm7|chr14 (28938776-28939329)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               481-1106, gnl|bosTau2|chr1 (98835740-98836356)
               

               
               481-1106, gnl|Hg17|chr3 (15458476-15459120)
               

               
               481-1106, gnl|Mm7|chr14 (28938776-28939329)

Expressed library(ies): 34 entry(ies)

More info

Expressed library(ies): 34 entry(ies)

Help | Less info


               
               ret (0.514933)
               

               
               thg (0.507164)
               

               
               mgp (0.461361)
               

               
               ski (0.440205)
               

               
               ste (0.405625)
               

               
               fbs (0.350693)
               

               
               rec (0.346141)
               

               
               fhi (0.339155)
               

               
               vin (0.332557)
               

               
               sme (0.305437)
               

               
               ldo (0.291008)
               

               
               ova (0.258264)
               

               
               cbe (0.239234)
               

               
               ece (0.229305)
               

               
               aor (0.195274)
               

               
               nep (0.183925)
               

               
               sag (0.182715)
               

               
               gul (0.177588)
               

               
               fty (0.17584)
               

               
               cut (0.169924)
               

               
               cki (0.165235)
               

               
               nco (0.161734)
               

               
               mga (0.160205)
               

               
               cag (0.151194)
               

               
               hyp (0.142837)
               

               
               lnt (0.142308)
               

               
               csk (0.140746)
               

               
               ssp (0.13552)
               

               
               lyg (0.133103)
               

               
               kid (0.129735)
               

               
               sug (0.127291)
               

               
               pgl (0.118483)
               

               
               ecc (0.115035)
               

               
               nbm (0.0993246)

Expressed library(ies): 34 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               ret (0.514933)
               

               
               thg (0.507164)
               

               
               mgp (0.461361)
               

               
               ski (0.440205)
               

               
               ste (0.405625)
               

               
               fbs (0.350693)
               

               
               rec (0.346141)
               

               
               fhi (0.339155)
               

               
               vin (0.332557)
               

               
               sme (0.305437)
               

               
               ldo (0.291008)
               

               
               ova (0.258264)
               

               
               cbe (0.239234)
               

               
               ece (0.229305)
               

               
               aor (0.195274)
               

               
               nep (0.183925)
               

               
               sag (0.182715)
               

               
               gul (0.177588)
               

               
               fty (0.17584)
               

               
               cut (0.169924)
               

               
               cki (0.165235)
               

               
               nco (0.161734)
               

               
               mga (0.160205)
               

               
               cag (0.151194)
               

               
               hyp (0.142837)
               

               
               lnt (0.142308)
               

               
               csk (0.140746)
               

               
               ssp (0.13552)
               

               
               lyg (0.133103)
               

               
               kid (0.129735)
               

               
               sug (0.127291)
               

               
               pgl (0.118483)
               

               
               ecc (0.115035)
               

               
               nbm (0.0993246)

	481-1106, gnl\|bosTau2\|chr1 (98835740-98836356)
	481-1106, gnl\|Hg17\|chr3 (15458476-15459120)
	481-1106, gnl\|Mm7\|chr14 (28938776-28939329)

	ret (0.514933)
	thg (0.507164)
	mgp (0.461361)
	ski (0.440205)
	ste (0.405625)
	fbs (0.350693)
	rec (0.346141)
	fhi (0.339155)
	vin (0.332557)
	sme (0.305437)
	ldo (0.291008)
	ova (0.258264)
	cbe (0.239234)
	ece (0.229305)
	aor (0.195274)
	nep (0.183925)
	sag (0.182715)
	gul (0.177588)
	fty (0.17584)
	cut (0.169924)
	cki (0.165235)
	nco (0.161734)
	mga (0.160205)
	cag (0.151194)
	hyp (0.142837)
	lnt (0.142308)
	csk (0.140746)
	ssp (0.13552)
	lyg (0.133103)
	kid (0.129735)
	sug (0.127291)
	pgl (0.118483)
	ecc (0.115035)
	nbm (0.0993246)