Ss1.1-Pig4-TMW8040P01.3
|
AGGACAGGCCTGAAGGTCAAGACCACTCTTCCACTTCGTCTGGGACCCCCAACCCTCCCA
AGGCTCGAACTTATGCTGAAACTGTCAACCATCATTACTTGCTCTTTCAAGACACAGATT
TGAGTTCGTTCCACGGTCTGCTCCACAGAGAACCGATGCTGCGCATGCAGGAAGGCGAGG
GGCAGACACAGCTCTACCTGGACAGGCTGCAGCTGGAAGCTATTCATAAGGTACGTTTCA
GCCCAAACCTGGACTCCTATGGATGGCTGGTCTCTGGGGGGCAGTCAGGGCTGGTTCGGA
TCCATTTTGTCCGTGGACTCACCTCTCCACTGGGCCATCGTATGCAGCTTGAAAGCCAAG
CCCACTTCAGTGCTATGTTCCAGCCGGCCTCCTCTGTTGAAAGGCCTGGCTTCCCTCCAG
CCAGCCATCGCCTTCTGCCCAGTCCCTAGTGGTGGTCCCCAGAGGACCCTCGGAAGGAAG
TCCGCCAAGAACAGTTGGCCTCATGCACACAGCCGTGGGAACTGGGGCCTTTCTGGACAG
TGATGCTGCCAGGCCCGGACCTTTAGACCTGCCTCCCCGGGACTCCTTAGATCCCTCTCC
TTCCACAGACTTCGCCTGTCATCACGGCCCCCCGCGGGCAGGGGGGCTCTCCTCCACAAA
CTCTTGAGGCTCCTCAGCTTAAAACTACAACTCACGAGAAACACTCAGGCCTGACCTAGG
CTTGGGAGTCAAATTGCTCATATTGAGCATGTTGTGAAGTGAGGAAAGCTAAGTAAAGGT
ACTGGGTGTTTTTGAGACCACACGTGAGTGGGTGTTTGGAGAACGGGAAAGGGTATCTGC
ATGAAGGCTCCTGTCTGGCTGTATTCCTAGGACCCAATGTTACTGCCTTCGCAGCCTCCT
CTTTAGAGTCCCCAGCACACAGGCCCGTGACGGGGTGATGGTTACCTATTGGACTGAAAC
TGCTTAGAGTACTTGCTTAACTGGGGAACACCACAGACACCTTGCCAGCAGAACAGTGTT
TCAGATCTTACTTGCGCCTGCTTCTGGAATATTCCCGGTCACTGGTCATCCGACTCTTCT
TGAGCACTCCCAGACAGTCACGTTTTTAAAATCCTCCTTTATATCAAGGCAAAGAGTATA
CCTTTATAAATTTTTCCATGGGTATTAGGAAATCTAGTCACTCTTCCCTGTGATTGCCCT
TTTAAGTATTTAAAAATAGTTATCATGTGTTTCCCAAGCCTTTTCTTCTCTAGATTAAAT
ATCTTCAGTTACTTTAAAAAAAAA
|
Blue-coloured subsequences are predicted RNA structures by RNAz
|
AGGACAGGCCTGAAGGTCAAGACCACTCTTCCACTTCGTCTGGGACCCCCAACCCTCCCA
AGGCTCGAACTTATGCTGAAACTGTCAACCATCATTACTTGCTCTTTCAAGACACAGATT
TGAGTTCGTTCCACGGTCTGCTCCACAGAGAACCGATGCTGCGCATGCAGGAAGGCGAGG
GGCAGACACAGCTCTACCTGGACAGGCTGCAGCTGGAAGCTATTCATAAGGTACGTTTCA
GCCCAAACCTGGACTCCTATGGATGGCTGGTCTCTGGGGGGCAGTCAGGGCTGGTTCGGA
TCCATTTTGTCCGTGGACTCACCTCTCCACTGGGCCATCGTATGCAGCTTGAAAGCCAAG
CCCACTTCAGTGCTATGTTCCAGCCGGCCTCCTCTGTTGAAAGGCCTGGCTTCCCTCCAG
CCAGCCATCGCCTTCTGCCCAGTCCCTAGTGGTGGTCCCCAGAGGACCCTCGGAAGGAAG
TCCGCCAAGAACAGTTGGCCTCATGCACACAGCCGTGGGAACTGGGGCCTTTCTGGACAG
TGATGCTGCCAGGCCCGGACCTTTAGACCTGCCTCCCCGGGACTCCTTAGATCCCTCTCC
TTCCACAGACTTCGCCTGTCATCACGGCCCCCCGCGGGCAGGGGGGCTCTCCTCCACAAA
CTCTTGAGGCTCCTCAGCTTAAAACTACAACTCACGAGAAACACTCAGGCCTGACCTAGG
CTTGGGAGTCAAATTGCTCATATTGAGCATGTTGTGAAGTGAGGAAAGCTAAGTAAAGGT
ACTGGGTGTTTTTGAGACCACACGTGAGTGGGTGTTTGGAGAACGGGAAAGGGTATCTGC
ATGAAGGCTCCTGTCTGGCTGTATTCCTAGGACCCAATGTTACTGCCTTCGCAGCCTCCT
CTTTAGAGTCCCCAGCACACAGGCCCGTGACGGGGTGATGGTTACCTATTGGACTGAAAC
TGCTTAGAGTACTTGCTTAACTGGGGAACACCACAGACACCTTGCCAGCAGAACAGTGTT
TCAGATCTTACTTGCGCCTGCTTCTGGAATATTCCCGGTCACTGGTCATCCGACTCTTCT
TGAGCACTCCCAGACAGTCACGTTTTTAAAATCCTCCTTTATATCAAGGCAAAGAGTATA
CCTTTATAAATTTTTCCATGGGTATTAGGAAATCTAGTCACTCTTCCCTGTGATTGCCCT
TTTAAGTATTTAAAAATAGTTATCATGTGTTTCCCAAGCCTTTTCTTCTCTAGATTAAAT
ATCTTCAGTTACTTTAAAAAAAAA
|
|
gi|12842856|dbj|BAB25760.1| |
Protein identifier
|
gi|12842856|dbj|BAB25760.1| |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
|
1-122, gnl|bosTau2|chr11 (52008851-52008972) |
|
1-122, gnl|canFam2|chr17 (24274859-24275019) |
|
1-122, gnl|danRer3|chr20 (45541924-45541746) |
|
1-122, gnl|hg17|chr2 (27462551-27462714) |
|
1-122, gnl|Hg17|chr2 (27462676-27462555) |
|
1-122, gnl|loxAfr1|scaffold_28902 (11416-11253) |
|
1-122, gnl|mm7|chr5 (30190855-30191018) |
|
1-122, gnl|Mm7|chr5 (30190980-30190859) |
|
1-122, gnl|monDom2|scaffold_1 (148933172-148933009) |
|
1-122, gnl|oryCun1|scaffold_203841 (33792-33629) |
|
1-122, gnl|panTro1|chr12 (28403800-28403963) |
|
1-122, gnl|rheMac2|chr13 (27298644-27298807) |
|
1-122, gnl|rn3|chr6 (25199329-25199166) |
| |
|
220-1277, gnl|bosTau2|chr11 (52998281-52997230) |
|
220-1277, gnl|Hg17|chr2 (27461421-27460372) |
|
220-1277, gnl|Mm7|chr5 (30190293-30189123) |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
|
1-122, gnl|bosTau2|chr11 (52008851-52008972) |
|
1-122, gnl|canFam2|chr17 (24274859-24275019) |
|
1-122, gnl|danRer3|chr20 (45541924-45541746) |
|
1-122, gnl|hg17|chr2 (27462551-27462714) |
|
1-122, gnl|Hg17|chr2 (27462676-27462555) |
|
1-122, gnl|loxAfr1|scaffold_28902 (11416-11253) |
|
1-122, gnl|mm7|chr5 (30190855-30191018) |
|
1-122, gnl|Mm7|chr5 (30190980-30190859) |
|
1-122, gnl|monDom2|scaffold_1 (148933172-148933009) |
|
1-122, gnl|oryCun1|scaffold_203841 (33792-33629) |
|
1-122, gnl|panTro1|chr12 (28403800-28403963) |
|
1-122, gnl|rheMac2|chr13 (27298644-27298807) |
|
1-122, gnl|rn3|chr6 (25199329-25199166) |
| |
|
220-1277, gnl|bosTau2|chr11 (52998281-52997230) |
|
220-1277, gnl|Hg17|chr2 (27461421-27460372) |
|
220-1277, gnl|Mm7|chr5 (30190293-30189123) |
|
gul (0.177588) |
|
spl (0.143184) |
|
hyp (0.142837) |
|
hlv (0.139256) |
|
pla (0.133672) |
|
cbr (0.127975) |
|
eru (0.120048) |
|
clu (0.119646) |
|
med (0.116252) |
|
gul (0.177588) |
|
spl (0.143184) |
|
hyp (0.142837) |
|
hlv (0.139256) |
|
pla (0.133672) |
|
cbr (0.127975) |
|
eru (0.120048) |
|
clu (0.119646) |
|
med (0.116252) |
