Non-Coding RNA Search

Ss1.1-Pig4-TMW8040P08.5

Sequence:


               
               CGACGGACTGCGGGGCGGACGGTGGACGCAGGGACGCCGTTCTATCTCCGGCCCCCTCGA
GCCGAGCCCCGCCGTCGTTGCCGCCATGACGGGGCTGGTGCTGCTCTACTCCGGGGTCTT
CGTGGCCTTCTGGGCCTGCCTGCTCGTTGTGGGAATCTGCTACACCATTTTTGACTTGGG
CTTCCGCTTTGACGTGGCATGGTTCTTGACCGAGACTTCCCCCTTCATGTGGTCAAACCT
AGGCATCGGCCTGGCTATCTCCCTGTCTGTGGTTGGGGCAGCGTGGGGCATTTATATTAC
TGGCTCTTCCATCATTGGGGGAGGGGTGAAGGCCCCCAGGATCAAGACCAAGAACCTGGT
CAGCATCATCTTCTGTGAGGCTGTGGCCATCTACGGCATCATCATGGCAATTGTCATCAG
CAACATGGCTGAGCCTTTCAGTGCTACTGACCCCAAGGCCATCGGCCATCGAAACTACCA
CGCAGGATACTCCATGTTTGGGGCTGGCCTCACAGTGGGCCTGTCCAACCTCTTCTGTGG
CGTCTGTGTGGGCATCGTGGGCAGTGGAGCTGCCCTGGCGGATGCGCAGAACCCCAGCCT
CTTCGTAAAGATTCTCATCGTGGAGATCTTTGGCAGTGCCATTGGCCTCTTCGGGGTCAT
CGTCGCAATCCTTCAGACCTCCAGAGTGAAGATGGGCGATTAGATGGCCTGTGTGGGTGG
GGCCGTGCCTCACTCTTATTTATTTGTGGTTCTCCTGAGACAGCTGGAGCTGTGCCCCCC
AGGCTTTCAGGGGGCTTGGGGTCCAGGGCCCTCCCTGCCCTCACTTCTTGCTGCCTGTCG
ACTTGGAGGCAATGCCTGGCTGGATCCTCAGTGTGGGGAGTGGGCCGCCCATGACCATGT
GCAGCTTCGTACCTGTGTCCCACCTCCACCTCCACCCCGTCTTCCCAGTGTTTGTGAAAT
AAACGTGGCATT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CGACGGACTGCGGGGCGGACGGTGGACGCAGGGACGCCGTTCTATCTCCGGCCCCCTCGA
GCCGAGCCCCGCCGTCGTTGCCGCCATGACGGGGCTGGTGCTGCTCTACTCCGGGGTCTT
CGTGGCCTTCTGGGCCTGCCTGCTCGTTGTGGGAATCTGCTACACCATTTTTGACTTGGG
CTTCCGCTTTGACGTGGCATGGTTCTTGACCGAGACTTCCCCCTTCATGTGGTCAAACCT
AGGCATCGGCCTGGCTATCTCCCTGTCTGTGGTTGGGGCAGCGTGGGGCATTTATATTAC
TGGCTCTTCCATCATTGGGGGAGGGGTGAAGGCCCCCAGGATCAAGACCAAGAACCTGGT
CAGCATCATCTTCTGTGAGGCTGTGGCCATCTACGGCATCATCATGGCAATTGTCATCAG
CAACATGGCTGAGCCTTTCAGTGCTACTGACCCCAAGGCCATCGGCCATCGAAACTACCA
CGCAGGATACTCCATGTTTGGGGCTGGCCTCACAGTGGGCCTGTCCAACCTCTTCTGTGG
CGTCTGTGTGGGCATCGTGGGCAGTGGAGCTGCCCTGGCGGATGCGCAGAACCCCAGCCT
CTTCGTAAAGATTCTCATCGTGGAGATCTTTGGCAGTGCCATTGGCCTCTTCGGGGTCAT
CGTCGCAATCCTTCAGACCTCCAGAGTGAAGATGGGCGATTAGATGGCCTGTGTGGGTGG
GGCCGTGCCTCACTCTTATTTATTTGTGGTTCTCCTGAGACAGCTGGAGCTGTGCCCCCC
AGGCTTTCAGGGGGCTTGGGGTCCAGGGCCCTCCCTGCCCTCACTTCTTGCTGCCTGTCG
ACTTGGAGGCAATGCCTGGCTGGATCCTCAGTGTGGGGAGTGGGCCGCCCATGACCATGT
GCAGCTTCGTACCTGTGTCCCACCTCCACCTCCACCCCGTCTTCCCAGTGTTTGTGAAAT
AAACGTGGCATT

Coded protein: 1 entry(ies)

More info

Coded protein: 1 entry(ies)

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               Q6IB32_HUMAN

Coded protein: 1 entry(ies)

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Protein identifier


               
               Q6IB32_HUMAN

Predicted RNA structure(s): 1 entry(ies)

More info

Predicted RNA structure(s): 1 entry(ies)

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               417-588, - strand, RNAz p=0.947042

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               417-588, - strand, RNAz p=0.947042

Aligned organism(s): 9 entry(ies)

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Aligned organism(s): 9 entry(ies)

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               1-153, gnl|bosTau2|chr3 (70983099-70982947)
               

               
               1-153, gnl|Hg17|chr1 (44109721-44109873)
               

               
               1-153, gnl|Mm7|chr4 (117263751-117263608)
               


               
               348-588, gnl|bosTau2|chr9 (19124118-19124358)
               

               
               348-588, gnl|Hg17|chr1 (44111352-44111893)
               

               
               348-588, gnl|Mm7|chr4 (117262317-117261631)
               


               
               621-805, gnl|bosTau2|chr13 (36729269-36729085)
               

               
               621-805, gnl|Hg17|chr1 (44111926-44112873)
               

               
               621-805, gnl|Mm7|chr4 (117261598-117260953)

Aligned organism(s): 9 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-153, gnl|bosTau2|chr3 (70983099-70982947)
               

               
               1-153, gnl|Hg17|chr1 (44109721-44109873)
               

               
               1-153, gnl|Mm7|chr4 (117263751-117263608)
               


               
               348-588, gnl|bosTau2|chr9 (19124118-19124358)
               

               
               348-588, gnl|Hg17|chr1 (44111352-44111893)
               

               
               348-588, gnl|Mm7|chr4 (117262317-117261631)
               


               
               621-805, gnl|bosTau2|chr13 (36729269-36729085)
               

               
               621-805, gnl|Hg17|chr1 (44111926-44112873)
               

               
               621-805, gnl|Mm7|chr4 (117261598-117260953)

Expressed library(ies): 31 entry(ies)

More info

Expressed library(ies): 31 entry(ies)

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               hyp (0.85702)
               

               
               cov (0.528611)
               

               
               col (0.390016)
               

               
               nlu (0.383362)
               

               
               cly (0.361925)
               

               
               csp (0.322373)
               

               
               cli (0.305623)
               

               
               ese (0.253004)
               

               
               ecc (0.23007)
               

               
               mas (0.210305)
               

               
               fcc (0.197785)
               

               
               nep (0.183925)
               

               
               fty (0.17584)
               

               
               ton (0.1755)
               

               
               duo (0.172801)
               

               
               mcp (0.170648)
               

               
               eye (0.170503)
               

               
               nje (0.16592)
               

               
               nco (0.161734)
               

               
               eli (0.151814)
               

               
               spl (0.143184)
               

               
               pty (0.142714)
               

               
               lnt (0.142308)
               

               
               nca (0.136874)
               

               
               nmm (0.132802)
               

               
               ute (0.132784)
               

               
               kid (0.129735)
               

               
               eep (0.122564)
               

               
               jca (0.11396)
               

               
               cty (0.10408)
               

               
               jej (0.0989218)

Expressed library(ies): 31 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               hyp (0.85702)
               

               
               cov (0.528611)
               

               
               col (0.390016)
               

               
               nlu (0.383362)
               

               
               cly (0.361925)
               

               
               csp (0.322373)
               

               
               cli (0.305623)
               

               
               ese (0.253004)
               

               
               ecc (0.23007)
               

               
               mas (0.210305)
               

               
               fcc (0.197785)
               

               
               nep (0.183925)
               

               
               fty (0.17584)
               

               
               ton (0.1755)
               

               
               duo (0.172801)
               

               
               mcp (0.170648)
               

               
               eye (0.170503)
               

               
               nje (0.16592)
               

               
               nco (0.161734)
               

               
               eli (0.151814)
               

               
               spl (0.143184)
               

               
               pty (0.142714)
               

               
               lnt (0.142308)
               

               
               nca (0.136874)
               

               
               nmm (0.132802)
               

               
               ute (0.132784)
               

               
               kid (0.129735)
               

               
               eep (0.122564)
               

               
               jca (0.11396)
               

               
               cty (0.10408)
               

               
               jej (0.0989218)

	1-153, gnl\|bosTau2\|chr3 (70983099-70982947)
	1-153, gnl\|Hg17\|chr1 (44109721-44109873)
	1-153, gnl\|Mm7\|chr4 (117263751-117263608)

	348-588, gnl\|bosTau2\|chr9 (19124118-19124358)
	348-588, gnl\|Hg17\|chr1 (44111352-44111893)
	348-588, gnl\|Mm7\|chr4 (117262317-117261631)

	621-805, gnl\|bosTau2\|chr13 (36729269-36729085)
	621-805, gnl\|Hg17\|chr1 (44111926-44112873)
	621-805, gnl\|Mm7\|chr4 (117261598-117260953)

	hyp (0.85702)
	cov (0.528611)
	col (0.390016)
	nlu (0.383362)
	cly (0.361925)
	csp (0.322373)
	cli (0.305623)
	ese (0.253004)
	ecc (0.23007)
	mas (0.210305)
	fcc (0.197785)
	nep (0.183925)
	fty (0.17584)
	ton (0.1755)
	duo (0.172801)
	mcp (0.170648)
	eye (0.170503)
	nje (0.16592)
	nco (0.161734)
	eli (0.151814)
	spl (0.143184)
	pty (0.142714)
	lnt (0.142308)
	nca (0.136874)
	nmm (0.132802)
	ute (0.132784)
	kid (0.129735)
	eep (0.122564)
	jca (0.11396)
	cty (0.10408)
	jej (0.0989218)