Non-Coding RNA Search

Ss1.1-Pig4-TMW8040P10.5

Sequence:


               
               CTTCACACCCATTCCCAAACAGACCCTAAGGGAGCTAGTTTTCTCTGTCTACCTGTCCTT
CCAGGAGAGCAGTCCTGCCAGCTCCTGTCTTCTGAGAATGTACCAGAATCTGGAGAAACA
GAATCAGGGAGGGATGCTCTTCCCAAGAATGGCAGGTAGGATTTCAGAGAGGGGAAGAGA
CCCAGAAAGCACACTGAAGCATTTGCAGAGGAAGTGCTTTAGTCCCCTGTCCTGAGCAAA
CCGGGGTCGGGGGCATCCCTGCCCGGTGAACTTGCCAAGGCTCTTCCCTTGGACCCAGCA
CTTTCAGCCGCATCTGAACTTCCACCCAAGTGGGTGGATGAGACTAGATGCTCTTGCTTC
TGAAGAAAGCTCTGTGCGTGAGTGTTGTACCTTCTGGCCCTTCAACTTCCCAAGATGGGA
GAAAAGTCCCCTCCAGATAAAAGTTTATTTTGACACTCAGCTGTCCACTACAGAGGGTGT
TATTTTAGCAAAACCAAGGTCCCAGACCTTCTGATTCTTATTTATTTTTTGACAGACCAA
TCTGAAAGTATAGCACAAGAGCTCTTCTCTGCCTTCTCTCATGATGTTTCAGAGAGTGTC
GTGGTTGTGATTCAGAATAACTCCTATTCGGCTTACTGTGTTTCTTTGGGTCTCTGTATG
TTGTATTTGTCCTTGTGTCCCAGAATTGAATATGTGGGAGTCATTTTATCTATGGTGTGC
CCTCCTTTTCTCAGTGTTGCCAACATATCTTGTACTTGTTTACTGAAGAGTTGTGTCTAT
ATATAGAGAAAATATCTATAAATAGAAATGTATGAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CTTCACACCCATTCCCAAACAGACCCTAAGGGAGCTAGTTTTCTCTGTCTACCTGTCCTT
CCAGGAGAGCAGTCCTGCCAGCTCCTGTCTTCTGAGAATGTACCAGAATCTGGAGAAACA
GAATCAGGGAGGGATGCTCTTCCCAAGAATGGCAGGTAGGATTTCAGAGAGGGGAAGAGA
CCCAGAAAGCACACTGAAGCATTTGCAGAGGAAGTGCTTTAGTCCCCTGTCCTGAGCAAA
CCGGGGTCGGGGGCATCCCTGCCCGGTGAACTTGCCAAGGCTCTTCCCTTGGACCCAGCA
CTTTCAGCCGCATCTGAACTTCCACCCAAGTGGGTGGATGAGACTAGATGCTCTTGCTTC
TGAAGAAAGCTCTGTGCGTGAGTGTTGTACCTTCTGGCCCTTCAACTTCCCAAGATGGGA
GAAAAGTCCCCTCCAGATAAAAGTTTATTTTGACACTCAGCTGTCCACTACAGAGGGTGT
TATTTTAGCAAAACCAAGGTCCCAGACCTTCTGATTCTTATTTATTTTTTGACAGACCAA
TCTGAAAGTATAGCACAAGAGCTCTTCTCTGCCTTCTCTCATGATGTTTCAGAGAGTGTC
GTGGTTGTGATTCAGAATAACTCCTATTCGGCTTACTGTGTTTCTTTGGGTCTCTGTATG
TTGTATTTGTCCTTGTGTCCCAGAATTGAATATGTGGGAGTCATTTTATCTATGGTGTGC
CCTCCTTTTCTCAGTGTTGCCAACATATCTTGTACTTGTTTACTGAAGAGTTGTGTCTAT
ATATAGAGAAAATATCTATAAATAGAAATGTATGAA

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               167-382, - strand, RNAz p=0.999499

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               167-382, - strand, RNAz p=0.999499

Aligned organism(s): 2 entry(ies)

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Aligned organism(s): 2 entry(ies)

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               6-816, gnl|bosTau2|chr17 (39689374-39690224)
               

               
               6-816, gnl|Hg17|chr22 (23646387-23647367)

Aligned organism(s): 2 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               6-816, gnl|bosTau2|chr17 (39689374-39690224)
               

               
               6-816, gnl|Hg17|chr22 (23646387-23647367)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               spc (0.113366)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               spc (0.113366)

	6-816, gnl\|bosTau2\|chr17 (39689374-39690224)
	6-816, gnl\|Hg17\|chr22 (23646387-23647367)