Non-Coding RNA Search

Ss1.1-Pig4-TMW8040P21.3

Sequence:


               
               GGCCGCCATTGCCTCCAGCGCCCACCGAGCGTTTGGGGGTGTGGTGGGGTCTTGAAGTGG
GGGGTAAGGTCGGGGGCGAGCGAGGAGCGGACTGAAGCATCGTGGGCACCGGAGGCAGTG
TCCGCACACCGAAGGCCCGAGAAAGGGGCTTCCTAGAAACTTCCTGGGTGGCGAGGGCCA
GCGCAGCACCCCGCGGACCTTCTGCGAGCTGCCGCAGCTGGACGCGAGGCGCTCCCGTGC
GCGTGCGCGGCAAGGGTCTTCCCGCACCTGACCGCGAGACCCCAACGGCCGGCGGTTCGA
GGCCTCCCCTGGGCAGCCGGGTGGAGCCCGTCATGGCGCAGCTGTGCGGGCCGAGCTGGT
GCGGGGCGCTCCTCGCTCTGCTGGCACTGCTGCTCCTCGGCGGGGCCAAGGAGGCCAACG
GAGATCGTGGCGTCCACGATTTTTGCCAAGTTCCAAAGGTGGTGGGAAGATGCCGAGCGT
CCATCCCTAGGTGGTGGTACAATGTCACTGGTGGATCCTGTCAGCAGTTTGTGTATGGAG
GCTGTGAAGGGAATGACAATAATTACATGACTAAGGAGGAATGTCTTGCAAAGTGTGCTG
GTGTCACAGAGAGTACCATCAATGATCTGGCCACCAGCAGGAATGGAGCAGATTCCTCTG
TTCCAAGTGTCCCCAGAAGGCAGGATTCTGATGACCTCACCGATGATATTATCAACTATG
AAGAATACTGCACTGCCAAGGCTGTCACAGGGCCTTGCCGCGCAGCCTTCCCCCGCTGGT
ACTTTAATGCCGAGAAGAACTCTTGTGATAAGTTCATCTACGGAGGATGCCGGGGCAATA
AAAACAGCTACCACTCCAAGGAGGAGTGTATGCAGCGCTGCTTCGGCAAGCAGTTGTATC
CTGCCCTGCCCCGCGGCACTAAAGTGGTGGTCCTGGCAGGGCTGTTCGTGATGGTCCTGG
TCCTCTTGCTGGGCGCCTCCGTGGTCTGCCTGATCAGGGTGGCCAGAAGAAACCAGGAGC
GCGCCCTCCACACCGTCTGGAGCACTGCGGACGACAAAGAGCACCTGGTGAAGAGCACTT
ACGTGCTGTGAACGCCGCATCACCAAGGGGGTGCCCGCCCCCACCTTCTGTTGCTGGAAA
GAATCTGGGAAGGGAGGGAAGATGCGTGGCAAACATGTGCGCGCCTTTTCAAATAGAGTG
ATTGATTTGTATCTGTGTGATCATTAGGGTGTCGGGTCTGATTGTCACTCCAGAAGGTAA
GAAGGCTGCTCCCTGGTCTCCCGGGTGGGCTTGCTCTGGAAATCCTCTTAGAAAAGAGCT
GGGCACATTGCAGATGGTCTGACCCTAGACTGGAGTTGGTTCCTCTTCAATTTATTCCTA
TGCTCAGTGTAGAATTTTCTTTGCTTATGTTGAATCCAATTACCTCCTCTCCCATCACCA
AAGTGATATCTTCGCAGTTTCCTTTGTTTTGGGTGTTTTTTTTTAAATAAGTGGAAACAT
AAGGTTTTTTTAAAATTAGGATTCTGAAAGGAAGAAAGTAAAATGTACAAGTTTAATAAA
AAAAAAAAGGGGGGGACTTCCCTTTTAAAATAAATTTCAGCATGTGCTAAAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GGCCGCCATTGCCTCCAGCGCCCACCGAGCGTTTGGGGGTGTGGTGGGGTCTTGAAGTGG
GGGGTAAGGTCGGGGGCGAGCGAGGAGCGGACTGAAGCATCGTGGGCACCGGAGGCAGTG
TCCGCACACCGAAGGCCCGAGAAAGGGGCTTCCTAGAAACTTCCTGGGTGGCGAGGGCCA
GCGCAGCACCCCGCGGACCTTCTGCGAGCTGCCGCAGCTGGACGCGAGGCGCTCCCGTGC
GCGTGCGCGGCAAGGGTCTTCCCGCACCTGACCGCGAGACCCCAACGGCCGGCGGTTCGA
GGCCTCCCCTGGGCAGCCGGGTGGAGCCCGTCATGGCGCAGCTGTGCGGGCCGAGCTGGT
GCGGGGCGCTCCTCGCTCTGCTGGCACTGCTGCTCCTCGGCGGGGCCAAGGAGGCCAACG
GAGATCGTGGCGTCCACGATTTTTGCCAAGTTCCAAAGGTGGTGGGAAGATGCCGAGCGT
CCATCCCTAGGTGGTGGTACAATGTCACTGGTGGATCCTGTCAGCAGTTTGTGTATGGAG
GCTGTGAAGGGAATGACAATAATTACATGACTAAGGAGGAATGTCTTGCAAAGTGTGCTG
GTGTCACAGAGAGTACCATCAATGATCTGGCCACCAGCAGGAATGGAGCAGATTCCTCTG
TTCCAAGTGTCCCCAGAAGGCAGGATTCTGATGACCTCACCGATGATATTATCAACTATG
AAGAATACTGCACTGCCAAGGCTGTCACAGGGCCTTGCCGCGCAGCCTTCCCCCGCTGGT
ACTTTAATGCCGAGAAGAACTCTTGTGATAAGTTCATCTACGGAGGATGCCGGGGCAATA
AAAACAGCTACCACTCCAAGGAGGAGTGTATGCAGCGCTGCTTCGGCAAGCAGTTGTATC
CTGCCCTGCCCCGCGGCACTAAAGTGGTGGTCCTGGCAGGGCTGTTCGTGATGGTCCTGG
TCCTCTTGCTGGGCGCCTCCGTGGTCTGCCTGATCAGGGTGGCCAGAAGAAACCAGGAGC
GCGCCCTCCACACCGTCTGGAGCACTGCGGACGACAAAGAGCACCTGGTGAAGAGCACTT
ACGTGCTGTGAACGCCGCATCACCAAGGGGGTGCCCGCCCCCACCTTCTGTTGCTGGAAA
GAATCTGGGAAGGGAGGGAAGATGCGTGGCAAACATGTGCGCGCCTTTTCAAATAGAGTG
ATTGATTTGTATCTGTGTGATCATTAGGGTGTCGGGTCTGATTGTCACTCCAGAAGGTAA
GAAGGCTGCTCCCTGGTCTCCCGGGTGGGCTTGCTCTGGAAATCCTCTTAGAAAAGAGCT
GGGCACATTGCAGATGGTCTGACCCTAGACTGGAGTTGGTTCCTCTTCAATTTATTCCTA
TGCTCAGTGTAGAATTTTCTTTGCTTATGTTGAATCCAATTACCTCCTCTCCCATCACCA
AAGTGATATCTTCGCAGTTTCCTTTGTTTTGGGTGTTTTTTTTTAAATAAGTGGAAACAT
AAGGTTTTTTTAAAATTAGGATTCTGAAAGGAAGAAAGTAAAATGTACAAGTTTAATAAA
AAAAAAAAGGGGGGGACTTCCCTTTTAAAATAAATTTCAGCATGTGCTAAAAAAAAAAAA

Coded protein: 1 entry(ies)

More info

Coded protein: 1 entry(ies)

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               gi|61826293|ref|XP_584100.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|61826293|ref|XP_584100.1|

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               1-438, gnl|bosTau2|chr18 (43818739-43818301)
               

               
               1-438, gnl|Hg17|chr19 (43447049-43447478)
               

               
               1-438, gnl|Mm7|chr7 (26221571-26221147)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-438, gnl|bosTau2|chr18 (43818739-43818301)
               

               
               1-438, gnl|Hg17|chr19 (43447049-43447478)
               

               
               1-438, gnl|Mm7|chr7 (26221571-26221147)

Expressed library(ies): 44 entry(ies)

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Expressed library(ies): 44 entry(ies)

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               cut (2.37893)
               

               
               amn (2.08855)
               

               
               pro (2.04813)
               

               
               col (1.17005)
               

               
               cga (1.11638)
               

               
               sin (1.04969)
               

               
               cty (1.0408)
               

               
               ill (0.702371)
               

               
               cst (0.700182)
               

               
               mcp (0.682594)
               

               
               nmm (0.664011)
               

               
               ute (0.663922)
               

               
               cje (0.660939)
               

               
               nlu (0.575043)
               

               
               pla (0.534688)
               

               
               duo (0.518403)
               

               
               cki (0.495704)
               

               
               jej (0.494609)
               

               
               nco (0.485201)
               

               
               clu (0.478583)
               

               
               eje (0.395335)
               

               
               cmu (0.372787)
               

               
               eep (0.367692)
               

               
               gul (0.355177)
               

               
               nje (0.33184)
               

               
               mga (0.32041)
               

               
               pty (0.285429)
               

               
               cov (0.264306)
               

               
               ova (0.258264)
               

               
               bla (0.248694)
               

               
               mgp (0.230681)
               

               
               tes (0.207814)
               

               
               sto (0.179824)
               

               
               ton (0.1755)
               

               
               rec (0.17307)
               

               
               eye (0.170503)
               

               
               cli (0.152812)
               

               
               lin (0.145603)
               

               
               csk (0.140746)
               

               
               lyg (0.133103)
               

               
               tra (0.123092)
               

               
               cly (0.120642)
               

               
               eru (0.120048)
               

               
               pgl (0.118483)

Expressed library(ies): 44 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               cut (2.37893)
               

               
               amn (2.08855)
               

               
               pro (2.04813)
               

               
               col (1.17005)
               

               
               cga (1.11638)
               

               
               sin (1.04969)
               

               
               cty (1.0408)
               

               
               ill (0.702371)
               

               
               cst (0.700182)
               

               
               mcp (0.682594)
               

               
               nmm (0.664011)
               

               
               ute (0.663922)
               

               
               cje (0.660939)
               

               
               nlu (0.575043)
               

               
               pla (0.534688)
               

               
               duo (0.518403)
               

               
               cki (0.495704)
               

               
               jej (0.494609)
               

               
               nco (0.485201)
               

               
               clu (0.478583)
               

               
               eje (0.395335)
               

               
               cmu (0.372787)
               

               
               eep (0.367692)
               

               
               gul (0.355177)
               

               
               nje (0.33184)
               

               
               mga (0.32041)
               

               
               pty (0.285429)
               

               
               cov (0.264306)
               

               
               ova (0.258264)
               

               
               bla (0.248694)
               

               
               mgp (0.230681)
               

               
               tes (0.207814)
               

               
               sto (0.179824)
               

               
               ton (0.1755)
               

               
               rec (0.17307)
               

               
               eye (0.170503)
               

               
               cli (0.152812)
               

               
               lin (0.145603)
               

               
               csk (0.140746)
               

               
               lyg (0.133103)
               

               
               tra (0.123092)
               

               
               cly (0.120642)
               

               
               eru (0.120048)
               

               
               pgl (0.118483)

	1-438, gnl\|bosTau2\|chr18 (43818739-43818301)
	1-438, gnl\|Hg17\|chr19 (43447049-43447478)
	1-438, gnl\|Mm7\|chr7 (26221571-26221147)

	cut (2.37893)
	amn (2.08855)
	pro (2.04813)
	col (1.17005)
	cga (1.11638)
	sin (1.04969)
	cty (1.0408)
	ill (0.702371)
	cst (0.700182)
	mcp (0.682594)
	nmm (0.664011)
	ute (0.663922)
	cje (0.660939)
	nlu (0.575043)
	pla (0.534688)
	duo (0.518403)
	cki (0.495704)
	jej (0.494609)
	nco (0.485201)
	clu (0.478583)
	eje (0.395335)
	cmu (0.372787)
	eep (0.367692)
	gul (0.355177)
	nje (0.33184)
	mga (0.32041)
	pty (0.285429)
	cov (0.264306)
	ova (0.258264)
	bla (0.248694)
	mgp (0.230681)
	tes (0.207814)
	sto (0.179824)
	ton (0.1755)
	rec (0.17307)
	eye (0.170503)
	cli (0.152812)
	lin (0.145603)
	csk (0.140746)
	lyg (0.133103)
	tra (0.123092)
	cly (0.120642)
	eru (0.120048)
	pgl (0.118483)