Non-Coding RNA Search

Ss1.1-Pig4-TMW8040P23.3

Sequence:


               
               GGGTGCTAGGAACCACGAGGAGCTGGGGCGTGTTTCCGGTGCGGGTGACAGGCGACGGAG
TTGAAGCCCAAGTGCCCGGAGGGGACCATGGCCAGCAGCGAGCGCACCTTCATTGCCATC
AAGCCCGATGGGGTCCAGCGCGGCCTCGTGGGCGAGATCATCAAGCGTTTTGAGCAGAAG
GGATTCCGCCTCGTTGCCATGAAATTCATGCAGGCTTCCGAAGACCTTCTCAAGGAGCAT
TACATTGACCTGAAGGACCGTCCCTTCTTTGCTGGCCTGGTGACGTACATGCATTCAGGG
CCAGTGGTTGCCATGGTCTGGGAAGGGCTGAATGTTGTGAAGACAGGTCGAGTGATGCTT
GGGGAGACCAACCCTGCAGATTCCAAGCCTGGGACCATCCGAGGGGACTTCTGCATCCAA
GTCGGCAGAAACATCATCCATGGCAGTGACTCTGTGGAGAGCGCAGAGAAAGAGATTGGC
TTGTGGTTTCACCCTGAGGAACTGGTAGATTACAAGAGCTGTGCTCAGGCCTGGATCTAC
GAGTGACATGAAAGCAGACCGCAGCGCTTGTCCCATTCCATTTCTCCTCTCTCCCACGGG
CAGGGGACCAGGCTCTAGCAAATCGAGTTATTTCTGAGAACTTCCTTTTCATCTGGAGGG
GAACTCTTGGAGCTGTGAGTGCTCCCTGTACAGTGTTATGTGCTACCATCAGATTAAAAT
GTTTCATCGCAAGGAAGGAGTCTCTGAGATGACTTTGTCTTGTCGTGTTGCTTTGTATTT
TTTTTTTTCCTTTTCACCTACTCTGGCCTACCTGAGCTATAATAAATAAATTAATTAATT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GGGTGCTAGGAACCACGAGGAGCTGGGGCGTGTTTCCGGTGCGGGTGACAGGCGACGGAG
TTGAAGCCCAAGTGCCCGGAGGGGACCATGGCCAGCAGCGAGCGCACCTTCATTGCCATC
AAGCCCGATGGGGTCCAGCGCGGCCTCGTGGGCGAGATCATCAAGCGTTTTGAGCAGAAG
GGATTCCGCCTCGTTGCCATGAAATTCATGCAGGCTTCCGAAGACCTTCTCAAGGAGCAT
TACATTGACCTGAAGGACCGTCCCTTCTTTGCTGGCCTGGTGACGTACATGCATTCAGGG
CCAGTGGTTGCCATGGTCTGGGAAGGGCTGAATGTTGTGAAGACAGGTCGAGTGATGCTT
GGGGAGACCAACCCTGCAGATTCCAAGCCTGGGACCATCCGAGGGGACTTCTGCATCCAA
GTCGGCAGAAACATCATCCATGGCAGTGACTCTGTGGAGAGCGCAGAGAAAGAGATTGGC
TTGTGGTTTCACCCTGAGGAACTGGTAGATTACAAGAGCTGTGCTCAGGCCTGGATCTAC
GAGTGACATGAAAGCAGACCGCAGCGCTTGTCCCATTCCATTTCTCCTCTCTCCCACGGG
CAGGGGACCAGGCTCTAGCAAATCGAGTTATTTCTGAGAACTTCCTTTTCATCTGGAGGG
GAACTCTTGGAGCTGTGAGTGCTCCCTGTACAGTGTTATGTGCTACCATCAGATTAAAAT
GTTTCATCGCAAGGAAGGAGTCTCTGAGATGACTTTGTCTTGTCGTGTTGCTTTGTATTT
TTTTTTTTCCTTTTCACCTACTCTGGCCTACCTGAGCTATAATAAATAAATTAATTAATT

Coded protein: 1 entry(ies)

More info

Coded protein: 1 entry(ies)

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               gi|61656159|ref|NP_991387.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|61656159|ref|NP_991387.1|

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               83-542, gnl|bosTau2|chr19 (27323207-27323666)
               

               
               83-542, gnl|Hg17|chr12 (119182776-119183235)
               

               
               83-542, gnl|Mm7|chr5 (148594382-148593923)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               83-542, gnl|bosTau2|chr19 (27323207-27323666)
               

               
               83-542, gnl|Hg17|chr12 (119182776-119183235)
               

               
               83-542, gnl|Mm7|chr5 (148594382-148593923)

Expressed library(ies): 31 entry(ies)

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Expressed library(ies): 31 entry(ies)

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               ecc (0.575175)
               

               
               hyp (0.571347)
               

               
               cmu (0.55918)
               

               
               nms (0.427716)
               

               
               ton (0.351)
               

               
               mcp (0.341297)
               

               
               cki (0.330469)
               

               
               csp (0.322373)
               

               
               lnt (0.284616)
               

               
               cga (0.279096)
               

               
               hlv (0.278513)
               

               
               che (0.272628)
               

               
               fce (0.271592)
               

               
               ste (0.270416)
               

               
               ret (0.257467)
               

               
               ece (0.229305)
               

               
               hea (0.204499)
               

               
               fcc (0.197785)
               

               
               fbs (0.175346)
               

               
               duo (0.172801)
               

               
               eye (0.170503)
               

               
               cje (0.165235)
               

               
               cli (0.152812)
               

               
               lin (0.145603)
               

               
               nca (0.136874)
               

               
               ova (0.129132)
               

               
               eep (0.122564)
               

               
               pgl (0.118483)
               

               
               ebs (0.118301)
               

               
               spc (0.113366)
               

               
               jej (0.0989218)

Expressed library(ies): 31 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               ecc (0.575175)
               

               
               hyp (0.571347)
               

               
               cmu (0.55918)
               

               
               nms (0.427716)
               

               
               ton (0.351)
               

               
               mcp (0.341297)
               

               
               cki (0.330469)
               

               
               csp (0.322373)
               

               
               lnt (0.284616)
               

               
               cga (0.279096)
               

               
               hlv (0.278513)
               

               
               che (0.272628)
               

               
               fce (0.271592)
               

               
               ste (0.270416)
               

               
               ret (0.257467)
               

               
               ece (0.229305)
               

               
               hea (0.204499)
               

               
               fcc (0.197785)
               

               
               fbs (0.175346)
               

               
               duo (0.172801)
               

               
               eye (0.170503)
               

               
               cje (0.165235)
               

               
               cli (0.152812)
               

               
               lin (0.145603)
               

               
               nca (0.136874)
               

               
               ova (0.129132)
               

               
               eep (0.122564)
               

               
               pgl (0.118483)
               

               
               ebs (0.118301)
               

               
               spc (0.113366)
               

               
               jej (0.0989218)

	83-542, gnl\|bosTau2\|chr19 (27323207-27323666)
	83-542, gnl\|Hg17\|chr12 (119182776-119183235)
	83-542, gnl\|Mm7\|chr5 (148594382-148593923)

	ecc (0.575175)
	hyp (0.571347)
	cmu (0.55918)
	nms (0.427716)
	ton (0.351)
	mcp (0.341297)
	cki (0.330469)
	csp (0.322373)
	lnt (0.284616)
	cga (0.279096)
	hlv (0.278513)
	che (0.272628)
	fce (0.271592)
	ste (0.270416)
	ret (0.257467)
	ece (0.229305)
	hea (0.204499)
	fcc (0.197785)
	fbs (0.175346)
	duo (0.172801)
	eye (0.170503)
	cje (0.165235)
	cli (0.152812)
	lin (0.145603)
	nca (0.136874)
	ova (0.129132)
	eep (0.122564)
	pgl (0.118483)
	ebs (0.118301)
	spc (0.113366)
	jej (0.0989218)