Non-Coding RNA Search

Ss1.1-Pig4-TMW8041A01.3.5

Sequence:


               
               CGCCTTTAGGCTACACCTCTCCCTTCCTGTCAGCCCGGCTGGCCCAGCAACGGGAAGCCG
AGAGGCACCCACGTTTGGTGCCAACCGGCCCAACGCACCGAGAGCCCTCACCAGTCCGGT
ACGACAATCTGTCGCGTCATATTGTGGCCTCCCTCCAAGAACGAGAGAAGCTGCTACGCC
AGTCACCCCCAGTCCCAGGCCACGAGGAAGAACCAGGCTTGGGAGACTCAGGCATTCAGT
CAACACCAGGCTCAGGCCATGCCCCTCGTACTAGTTCCTCCTCAGATGATTCAAAGAGAT
CACCCTTGGGCAAGACTCCACTCGGACGACCTGCCGCCCCGCGTTTTGGCAAGCCCGACG
GGCTAAGGGGCCGGGGACTAGGCTCCCCTGAACCAGGCCCAACTGCCCCCTACCTGGGCC
GATCTATGTCTTACAGCAGCCAAAAAGCCCCACCTGGTGTCTCTGAGACGGAGGAAGTGG
CCTTGCAGCCATTACTGACACCCAAAGATGAAGTACAGCTCAAGACGGCCTACAGCAAAT
CCAACGGGCAGCCCAAGAGTATAGGCTCAGCCTCCCCTGGCCCAGGCCAGCCGCCTCTCA
GTAGCCCCACAAGGGGAGGAGTCAAGAAGGTGTCAGGGGTGGGTGGCACCACCTATGAGA
TTTCGGTGTGAGCCTTGGGCACCTCCCCTCCCCCACGCCTCTGCGCCTACACCAAAGGGC
CTCAGGTGGCCACCTTCCTTTCCTCGAGGGGCTCCCCTCCCCTGCATGGACATTTTTCAA
ACCACCGATTCCAAGAGGATGAGGAGTATTTTATAACATGCAGTGGGGTTGGGGAGTCGG
AGAGTCGGGGCCCTGAGACTGGGGTAGTAACCCCCTTCACCTTTTAAGACCTTCCCTTCC
TTAACCCCTGGACCAGACTCAGTGGACATTTGTGCAATTGCTCGCCCTGGAGGGAACCAG
ATCATTTTTAAACCAGAAATAATTTTTTTTATTATT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CGCCTTTAGGCTACACCTCTCCCTTCCTGTCAGCCCGGCTGGCCCAGCAACGGGAAGCCG
AGAGGCACCCACGTTTGGTGCCAACCGGCCCAACGCACCGAGAGCCCTCACCAGTCCGGT
ACGACAATCTGTCGCGTCATATTGTGGCCTCCCTCCAAGAACGAGAGAAGCTGCTACGCC
AGTCACCCCCAGTCCCAGGCCACGAGGAAGAACCAGGCTTGGGAGACTCAGGCATTCAGT
CAACACCAGGCTCAGGCCATGCCCCTCGTACTAGTTCCTCCTCAGATGATTCAAAGAGAT
CACCCTTGGGCAAGACTCCACTCGGACGACCTGCCGCCCCGCGTTTTGGCAAGCCCGACG
GGCTAAGGGGCCGGGGACTAGGCTCCCCTGAACCAGGCCCAACTGCCCCCTACCTGGGCC
GATCTATGTCTTACAGCAGCCAAAAAGCCCCACCTGGTGTCTCTGAGACGGAGGAAGTGG
CCTTGCAGCCATTACTGACACCCAAAGATGAAGTACAGCTCAAGACGGCCTACAGCAAAT
CCAACGGGCAGCCCAAGAGTATAGGCTCAGCCTCCCCTGGCCCAGGCCAGCCGCCTCTCA
GTAGCCCCACAAGGGGAGGAGTCAAGAAGGTGTCAGGGGTGGGTGGCACCACCTATGAGA
TTTCGGTGTGAGCCTTGGGCACCTCCCCTCCCCCACGCCTCTGCGCCTACACCAAAGGGC
CTCAGGTGGCCACCTTCCTTTCCTCGAGGGGCTCCCCTCCCCTGCATGGACATTTTTCAA
ACCACCGATTCCAAGAGGATGAGGAGTATTTTATAACATGCAGTGGGGTTGGGGAGTCGG
AGAGTCGGGGCCCTGAGACTGGGGTAGTAACCCCCTTCACCTTTTAAGACCTTCCCTTCC
TTAACCCCTGGACCAGACTCAGTGGACATTTGTGCAATTGCTCGCCCTGGAGGGAACCAG
ATCATTTTTAAACCAGAAATAATTTTTTTTATTATT

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|5912258|emb|CAB56033.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|5912258|emb|CAB56033.1|

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               1-119, - strand, RNAz p=0.516446

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               1-119, - strand, RNAz p=0.516446

Aligned organism(s): 18 entry(ies)

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Aligned organism(s): 18 entry(ies)

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               1-505, gnl|bosTau2|chr15 (50459530-50459029)
               

               
               1-505, gnl|Hg17|chr11 (57222962-57223466)
               

               
               1-505, gnl|Mm7|chr2 (84534070-84533566)
               


               
               754-996, gnl|bosTau2|chr15 (50458425-50458187)
               

               
               754-996, gnl|canFam2|chr18 (41564280-41563940)
               

               
               754-996, gnl|dasNov1|scaffold_40510 (6892-6569)
               

               
               754-996, gnl|echTel1|scaffold_259214 (72-398)
               

               
               754-996, gnl|galGal2|chr5 (14266960-14266566)
               

               
               754-996, gnl|hg17|chr11 (57224111-57224453)
               

               
               754-996, gnl|Hg17|chr11 (57224162-57224407)
               

               
               754-996, gnl|loxAfr1|scaffold_15132 (36745-36406)
               

               
               754-996, gnl|mm7|chr2 (84532966-84532627)
               

               
               754-996, gnl|Mm7|chr2 (84532913-84532671)
               

               
               754-996, gnl|monDom2|scaffold_33 (20829046-20829396)
               

               
               754-996, gnl|oryCun1|scaffold_185859 (11070-11412)
               

               
               754-996, gnl|panTro1|chr9 (58135188-58135531)
               

               
               754-996, gnl|rheMac2|chr14 (15710406-15710063)
               

               
               754-996, gnl|rn3|chr3 (67795283-67794944)

Aligned organism(s): 18 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-505, gnl|bosTau2|chr15 (50459530-50459029)
               

               
               1-505, gnl|Hg17|chr11 (57222962-57223466)
               

               
               1-505, gnl|Mm7|chr2 (84534070-84533566)
               


               
               754-996, gnl|bosTau2|chr15 (50458425-50458187)
               

               
               754-996, gnl|canFam2|chr18 (41564280-41563940)
               

               
               754-996, gnl|dasNov1|scaffold_40510 (6892-6569)
               

               
               754-996, gnl|echTel1|scaffold_259214 (72-398)
               

               
               754-996, gnl|galGal2|chr5 (14266960-14266566)
               

               
               754-996, gnl|hg17|chr11 (57224111-57224453)
               

               
               754-996, gnl|Hg17|chr11 (57224162-57224407)
               

               
               754-996, gnl|loxAfr1|scaffold_15132 (36745-36406)
               

               
               754-996, gnl|mm7|chr2 (84532966-84532627)
               

               
               754-996, gnl|Mm7|chr2 (84532913-84532671)
               

               
               754-996, gnl|monDom2|scaffold_33 (20829046-20829396)
               

               
               754-996, gnl|oryCun1|scaffold_185859 (11070-11412)
               

               
               754-996, gnl|panTro1|chr9 (58135188-58135531)
               

               
               754-996, gnl|rheMac2|chr14 (15710406-15710063)
               

               
               754-996, gnl|rn3|chr3 (67795283-67794944)

Expressed library(ies): 2 entry(ies)

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Expressed library(ies): 2 entry(ies)

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               hyp (0.142837)
               

               
               eep (0.122564)

Expressed library(ies): 2 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               hyp (0.142837)
               

               
               eep (0.122564)

	1-505, gnl\|bosTau2\|chr15 (50459530-50459029)
	1-505, gnl\|Hg17\|chr11 (57222962-57223466)
	1-505, gnl\|Mm7\|chr2 (84534070-84533566)

	754-996, gnl\|bosTau2\|chr15 (50458425-50458187)
	754-996, gnl\|canFam2\|chr18 (41564280-41563940)
	754-996, gnl\|dasNov1\|scaffold_40510 (6892-6569)
	754-996, gnl\|echTel1\|scaffold_259214 (72-398)
	754-996, gnl\|galGal2\|chr5 (14266960-14266566)
	754-996, gnl\|hg17\|chr11 (57224111-57224453)
	754-996, gnl\|Hg17\|chr11 (57224162-57224407)
	754-996, gnl\|loxAfr1\|scaffold_15132 (36745-36406)
	754-996, gnl\|mm7\|chr2 (84532966-84532627)
	754-996, gnl\|Mm7\|chr2 (84532913-84532671)
	754-996, gnl\|monDom2\|scaffold_33 (20829046-20829396)
	754-996, gnl\|oryCun1\|scaffold_185859 (11070-11412)
	754-996, gnl\|panTro1\|chr9 (58135188-58135531)
	754-996, gnl\|rheMac2\|chr14 (15710406-15710063)
	754-996, gnl\|rn3\|chr3 (67795283-67794944)