Non-Coding RNA Search

Ss1.1-Pig4-TMW8041A03.3

Sequence:


               
               GCTTTCGGAAGTGAACCTCAGAATGAGAACCTCAAGCATTTGGGATCCAGTGGAGCTAAC
AGTCCTGCCTCCTGTTCTCTGAGTATAGACAGGGGTGGGAAGGGTCCGTCCAGCAGGGGA
ATGGGGCCATGTCGTTGACATTAGGTACTTAGTAAACCTTGGAGCTAGTGGAGAGGAGGA
GGAAGGGGATCTGTCTAACACAGTTCAGTTTAACTTGTTTTCCTCTCCATTGCTTCACCC
TGAGGGTTAATAATGTAGGGTGGAGGGCAGAGCACAGTGGGGATGACCAGAATCTTTTGG
TACTTTACAGCACTTGCCCCTCCCCCCAGCTTGGGTCTTTCTGTGTCATCCTCTGATTCT
GCAGACACTGCTAAGAAGCTGCTTCCTATACCCAGGTATAATTCAGACCCCAAAGGGATA
GGGCCAGAATCCCCACGCCTCTCCTGTCTGTTCCTTATAGGCTCCAAGAGCTACCCCAGA
CACCTAAGACAGAAAGAGTAGCTGGAGCCTCTTTCCGGATCCCTGACTAGGAGAAGTTTC
TCTCTCCTTTCTTGCCCAACCAGGTCAAAGTAAAATGTGAGCTGACAACTCAAAGCACTT
GCCACTGCTGCCCCTCTCCCTACCTCTCCTCCCCAAAATAGAATCATGGAATAGGGAAGG
CCCCCATGGGGTCAGAAGGGCACAGTACTTATTGTAATTATTTTTGTTTTAACCTTCATA
ACCTGCCGAACATACTCTTTCCTAATGAGAAGGCCAGGCCCCCGCCAGCACACGTGCTAT
TTATGCGCTGTGGTTCTTGTGTGTCTGCTGTGCTGTGCGAATGGAGATTCATTTCAAAAT
AAAATCATTTTAAAACCTACATAAAAATGAACTCTAACCACCCTCCAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GCTTTCGGAAGTGAACCTCAGAATGAGAACCTCAAGCATTTGGGATCCAGTGGAGCTAAC
AGTCCTGCCTCCTGTTCTCTGAGTATAGACAGGGGTGGGAAGGGTCCGTCCAGCAGGGGA
ATGGGGCCATGTCGTTGACATTAGGTACTTAGTAAACCTTGGAGCTAGTGGAGAGGAGGA
GGAAGGGGATCTGTCTAACACAGTTCAGTTTAACTTGTTTTCCTCTCCATTGCTTCACCC
TGAGGGTTAATAATGTAGGGTGGAGGGCAGAGCACAGTGGGGATGACCAGAATCTTTTGG
TACTTTACAGCACTTGCCCCTCCCCCCAGCTTGGGTCTTTCTGTGTCATCCTCTGATTCT
GCAGACACTGCTAAGAAGCTGCTTCCTATACCCAGGTATAATTCAGACCCCAAAGGGATA
GGGCCAGAATCCCCACGCCTCTCCTGTCTGTTCCTTATAGGCTCCAAGAGCTACCCCAGA
CACCTAAGACAGAAAGAGTAGCTGGAGCCTCTTTCCGGATCCCTGACTAGGAGAAGTTTC
TCTCTCCTTTCTTGCCCAACCAGGTCAAAGTAAAATGTGAGCTGACAACTCAAAGCACTT
GCCACTGCTGCCCCTCTCCCTACCTCTCCTCCCCAAAATAGAATCATGGAATAGGGAAGG
CCCCCATGGGGTCAGAAGGGCACAGTACTTATTGTAATTATTTTTGTTTTAACCTTCATA
ACCTGCCGAACATACTCTTTCCTAATGAGAAGGCCAGGCCCCCGCCAGCACACGTGCTAT
TTATGCGCTGTGGTTCTTGTGTGTCTGCTGTGCTGTGCGAATGGAGATTCATTTCAAAAT
AAAATCATTTTAAAACCTACATAAAAATGAACTCTAACCACCCTCCAA

Predicted RNA structure(s): 3 entry(ies)

More info

Predicted RNA structure(s): 3 entry(ies)

Help | Less info


               
               150-269, - strand, RNAz p=0.999751
               

               
               390-548, - strand, RNAz p=0.957236
               

               
               586-697, - strand, RNAz p=0.959364

Predicted RNA structure(s): 3 entry(ies)

Help | Less info

PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               150-269, - strand, RNAz p=0.999751
               

               
               390-548, - strand, RNAz p=0.957236
               

               
               586-697, - strand, RNAz p=0.959364

Predicted microRNA(s): 1 entry(ies)

More info

Predicted microRNA(s): 1 entry(ies)

Help | Less info


               
               165-258, + strand, RNAmicro p=0.999998

Predicted microRNA(s): 1 entry(ies)

Help | Less info

PigEST conread start position and end position of the predicted microRNA,
PigEST conread reading direction of prediction,
miRNA classificator p of RNAmicro


               
               165-258, + strand, RNAmicro p=0.999998

Aligned organism(s): 3 entry(ies)

More info

Aligned organism(s): 3 entry(ies)

Help | Less info


               
               1-886, gnl|bosTau2|chr3 (9618171-9617287)
               

               
               1-886, gnl|Hg17|chr1 (152120537-152119650)
               

               
               1-886, gnl|Mm7|chr3 (89190870-89191635)

Aligned organism(s): 3 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-886, gnl|bosTau2|chr3 (9618171-9617287)
               

               
               1-886, gnl|Hg17|chr1 (152120537-152119650)
               

               
               1-886, gnl|Mm7|chr3 (89190870-89191635)

Expressed library(ies): 3 entry(ies)

More info

Expressed library(ies): 3 entry(ies)

Help | Less info


               
               elu (0.385356)
               

               
               nlu (0.191681)
               

               
               pgl (0.118483)

Expressed library(ies): 3 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               elu (0.385356)
               

               
               nlu (0.191681)
               

               
               pgl (0.118483)

	150-269, - strand, RNAz p=0.999751
	390-548, - strand, RNAz p=0.957236
	586-697, - strand, RNAz p=0.959364

	1-886, gnl\|bosTau2\|chr3 (9618171-9617287)
	1-886, gnl\|Hg17\|chr1 (152120537-152119650)
	1-886, gnl\|Mm7\|chr3 (89190870-89191635)