Ss1.1-Pig4-TMW8041A09.3
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| TGTCAGCTTTTAAGGAGAACTGTGGAATCTATTTTCCAGAAATAAAAAGAGATCCAGGCA GATATTTACACACTTGCCCTGAATCTGTAAAAAAGTGGCTTCGACAGTTGAAGAATGCTG GGAAAATTCTTATGTTAATTACCAGCTCTCACAGTGATTACTGTAGACTCCTCTGCAGAT ATATCCTTGGGAATGATTTTGAAGATCTTTTTGACATTGTGATTACAAATGCCTTGAAGC CTGGTTTCTTCTCCCATTTACCAAGTCAGAGGCCCTTCCGGACACTTGAGAATGACGAGG AGCAGGAGGCTCTGCCGTCTCTGGATAAGCCTGGCTGGTACTCCCAGGGGAATGCGGTCC ACCTTTATGAACTTCTGAAGAAAATGACTGGCCAACCTGAACCCAAGGTTGTTTACTTTG GTGACAGTATGCATTCAGATATTTTCCCAGCCTCTCATTATAGTAATTGGGAGACAGTCC TCATCTTGGAAGAGCTCAGAGGGGACAGAGACGGGAAGCCTGAGGATGCAGAGCCTCTAG AGAAGAAAGGAAAATATGAGGGACCGAAGGCAAAGCCTCTGAATGCATTATCTAAAAAAT GGGGCTCTTTTTTTATCGATTCAGTTTCTGGACTGGAAAATACAAAAGATTCCTTGGTTT ATACATGGTCTTGTAAGAGAATCAGTGCTTACAGCACTATTGCAATCCCAAGTATTGAAG CAATAGCAGAATTACCCCTGGACTACAAATTTACAAGGTTCTCTTCAAACAATTCAAAAA CGGCTGGTTATTATCCAAACCCTCCATTGGTATTATTAAATGATGGGATGCTGACAGCTA AATAAACTGTCTTAACTAAAAACTGAAGAACTATATATGCAGCAAATATACTGTAAAAAT GTTAATTTTCAAAAAATACTGTAAAATGCTTTATAGGAACAAATTGTAAAGTGACCAAGA AATTGATGTTTTTCAATGGGTCTCCTTTCAATAGAGATCATCTTGATACCCAACAACTCC CATTAATTAAAATCTCATTATCTT |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| TGTCAGCTTTTAAGGAGAACTGTGGAATCTATTTTCCAGAAATAAAAAGAGATCCAGGCA GATATTTACACACTTGCCCTGAATCTGTAAAAAAGTGGCTTCGACAGTTGAAGAATGCTG GGAAAATTCTTATGTTAATTACCAGCTCTCACAGTGATTACTGTAGACTCCTCTGCAGAT ATATCCTTGGGAATGATTTTGAAGATCTTTTTGACATTGTGATTACAAATGCCTTGAAGC CTGGTTTCTTCTCCCATTTACCAAGTCAGAGGCCCTTCCGGACACTTGAGAATGACGAGG AGCAGGAGGCTCTGCCGTCTCTGGATAAGCCTGGCTGGTACTCCCAGGGGAATGCGGTCC ACCTTTATGAACTTCTGAAGAAAATGACTGGCCAACCTGAACCCAAGGTTGTTTACTTTG GTGACAGTATGCATTCAGATATTTTCCCAGCCTCTCATTATAGTAATTGGGAGACAGTCC TCATCTTGGAAGAGCTCAGAGGGGACAGAGACGGGAAGCCTGAGGATGCAGAGCCTCTAG AGAAGAAAGGAAAATATGAGGGACCGAAGGCAAAGCCTCTGAATGCATTATCTAAAAAAT GGGGCTCTTTTTTTATCGATTCAGTTTCTGGACTGGAAAATACAAAAGATTCCTTGGTTT ATACATGGTCTTGTAAGAGAATCAGTGCTTACAGCACTATTGCAATCCCAAGTATTGAAG CAATAGCAGAATTACCCCTGGACTACAAATTTACAAGGTTCTCTTCAAACAATTCAAAAA CGGCTGGTTATTATCCAAACCCTCCATTGGTATTATTAAATGATGGGATGCTGACAGCTA AATAAACTGTCTTAACTAAAAACTGAAGAACTATATATGCAGCAAATATACTGTAAAAAT GTTAATTTTCAAAAAATACTGTAAAATGCTTTATAGGAACAAATTGTAAAGTGACCAAGA AATTGATGTTTTTCAATGGGTCTCCTTTCAATAGAGATCATCTTGATACCCAACAACTCC CATTAATTAAAATCTCATTATCTT |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
| 8-729, - strand, RNAz p=0.818157 |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 8-729, - strand, RNAz p=0.818157 |
| Aligned organism(s): 66 entry(ies) | More info |
| Aligned organism(s): 66 entry(ies) | Help | Less info |
| 8-234, gnl|bosTau2|chr9 (18548121-18547897) | |
| 8-234, gnl|canFam2|chr12 (74924804-74924998) | |
| 8-234, gnl|danRer3|chr20 (306435-306240) | |
| 8-234, gnl|dasNov1|scaffold_1898 (50731-50524) | |
| 8-234, gnl|fr1|chrUn (210811411-210811218) | |
| 8-234, gnl|galGal2|chr3 (62365540-62365341) | |
| 8-234, gnl|hg17|chr6 (116648898-116649097) | |
| 8-234, gnl|Hg17|chr6 (116648903-116649127) | |
| 8-234, gnl|mm7|chr10 (34105115-34104921) | |
| 8-234, gnl|Mm7|chr10 (34105113-34104903) | |
| 8-234, gnl|monDom2|scaffold_0 (101414934-101414723) | |
| 8-234, gnl|oryCun1|scaffold_136627 (438-239) | |
| 8-234, gnl|panTro1|chr5 (119044698-119044897) | |
| 8-234, gnl|rheMac2|chr4 (147708301-147708102) | |
| 8-234, gnl|rn3|chr20 (38691129-38690929) | |
| 8-234, gnl|tetNig1|chrUn_random (112156420-112156227) | |
| 8-234, gnl|xenTro1|scaffold_373 (661116-660916) | |
| 288-421, gnl|bosTau2|chr9 (18544467-18544333) | |
| 288-421, gnl|canFam2|chr12 (74932249-74932420) | |
| 288-421, gnl|canFam2|chr12 (74932402-74932282) | |
| 288-421, gnl|danRer3|chr20 (304658-304536) | |
| 288-421, gnl|dasNov1|scaffold_1898 (35347-35170) | |
| 288-421, gnl|dasNov1|scaffold_1898 (35194-35315) | |
| 288-421, gnl|fr1|chrUn (210808630-210808499) | |
| 288-421, gnl|fr1|chrUn (210808500-210808622) | |
| 288-421, gnl|galGal2|chr3 (62340405-62340251) | |
| 288-421, gnl|hg17|chr6 (116664790-116664967) | |
| 288-421, gnl|Hg17|chr6 (116664821-116664955) | |
| 288-421, gnl|hg17|chrX (92449705-92449824) | |
| 288-421, gnl|mm7|chr10 (34095540-34095365) | |
| 288-421, gnl|mm7|chr10 (34095393-34095514) | |
| 288-421, gnl|Mm7|chr10 (34095513-34095379) | |
| 288-421, gnl|monDom2|scaffold_0 (101350772-101350596) | |
| 288-421, gnl|oryCun1|scaffold_212925 (39211-39037) | |
| 288-421, gnl|oryCun1|scaffold_212925 (39059-39180) | |
| 288-421, gnl|panTro1|chr5 (119060625-119060802) | |
| 288-421, gnl|panTro1|chrX (95304069-95304188) | |
| 288-421, gnl|rheMac2|chr4 (147692147-147691970) | |
| 288-421, gnl|rheMac2|chrX (92040486-92040605) | |
| 288-421, gnl|rn3|chr20 (38682225-38682053) | |
| 288-421, gnl|rn3|chr20 (38682077-38682198) | |
| 288-421, gnl|tetNig1|chrUn_random (112151157-112151026) | |
| 288-421, gnl|tetNig1|chrUn_random (112151027-112151149) | |
| 288-421, gnl|xenTro1|scaffold_373 (656579-656452) | |
| 559-729, gnl|bosTau2|chr9 (18540414-18540244) | |
| 559-729, gnl|canFam2|chr12 (74939460-74939653) | |
| 559-729, gnl|canFam2|chr12 (74939646-74939479) | |
| 559-729, gnl|danRer3|chr20 (300450-300273) | |
| 559-729, gnl|fr1|chrUn (210804276-210804087) | |
| 559-729, gnl|galGal2|chr3 (62332876-62332677) | |
| 559-729, gnl|hg17|chr6 (116666794-116666987) | |
| 559-729, gnl|Hg17|chr6 (116666809-116666979) | |
| 559-729, gnl|hg17|chrX (92449336-92449488) | |
| 559-729, gnl|mm7|chr10 (34091132-34090939) | |
| 559-729, gnl|mm7|chr10 (34090946-34091113) | |
| 559-729, gnl|Mm7|chr10 (34091115-34090945) | |
| 559-729, gnl|monDom2|scaffold_0 (101331441-101331239) | |
| 559-729, gnl|panTro1|chr5 (119062628-119062821) | |
| 559-729, gnl|panTro1|chrX (95303759-95303911) | |
| 559-729, gnl|rheMac2|chr4 (147690156-147689963) | |
| 559-729, gnl|rheMac2|chrX (92040119-92040271) | |
| 559-729, gnl|rn3|chr20 (38675616-38675423) | |
| 559-729, gnl|rn3|chr20 (38675430-38675597) | |
| 559-729, gnl|xenTro1|scaffold_373 (652743-652563) | |
| 905-1044, gnl|bosTau2|chr10 (41274781-41274928) | |
| 905-1044, gnl|Hg17|chr6 (145070886-145070751) |
| Aligned organism(s): 66 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 8-234, gnl|bosTau2|chr9 (18548121-18547897) | |
| 8-234, gnl|canFam2|chr12 (74924804-74924998) | |
| 8-234, gnl|danRer3|chr20 (306435-306240) | |
| 8-234, gnl|dasNov1|scaffold_1898 (50731-50524) | |
| 8-234, gnl|fr1|chrUn (210811411-210811218) | |
| 8-234, gnl|galGal2|chr3 (62365540-62365341) | |
| 8-234, gnl|hg17|chr6 (116648898-116649097) | |
| 8-234, gnl|Hg17|chr6 (116648903-116649127) | |
| 8-234, gnl|mm7|chr10 (34105115-34104921) | |
| 8-234, gnl|Mm7|chr10 (34105113-34104903) | |
| 8-234, gnl|monDom2|scaffold_0 (101414934-101414723) | |
| 8-234, gnl|oryCun1|scaffold_136627 (438-239) | |
| 8-234, gnl|panTro1|chr5 (119044698-119044897) | |
| 8-234, gnl|rheMac2|chr4 (147708301-147708102) | |
| 8-234, gnl|rn3|chr20 (38691129-38690929) | |
| 8-234, gnl|tetNig1|chrUn_random (112156420-112156227) | |
| 8-234, gnl|xenTro1|scaffold_373 (661116-660916) | |
| 288-421, gnl|bosTau2|chr9 (18544467-18544333) | |
| 288-421, gnl|canFam2|chr12 (74932249-74932420) | |
| 288-421, gnl|canFam2|chr12 (74932402-74932282) | |
| 288-421, gnl|danRer3|chr20 (304658-304536) | |
| 288-421, gnl|dasNov1|scaffold_1898 (35347-35170) | |
| 288-421, gnl|dasNov1|scaffold_1898 (35194-35315) | |
| 288-421, gnl|fr1|chrUn (210808630-210808499) | |
| 288-421, gnl|fr1|chrUn (210808500-210808622) | |
| 288-421, gnl|galGal2|chr3 (62340405-62340251) | |
| 288-421, gnl|hg17|chr6 (116664790-116664967) | |
| 288-421, gnl|Hg17|chr6 (116664821-116664955) | |
| 288-421, gnl|hg17|chrX (92449705-92449824) | |
| 288-421, gnl|mm7|chr10 (34095540-34095365) | |
| 288-421, gnl|mm7|chr10 (34095393-34095514) | |
| 288-421, gnl|Mm7|chr10 (34095513-34095379) | |
| 288-421, gnl|monDom2|scaffold_0 (101350772-101350596) | |
| 288-421, gnl|oryCun1|scaffold_212925 (39211-39037) | |
| 288-421, gnl|oryCun1|scaffold_212925 (39059-39180) | |
| 288-421, gnl|panTro1|chr5 (119060625-119060802) | |
| 288-421, gnl|panTro1|chrX (95304069-95304188) | |
| 288-421, gnl|rheMac2|chr4 (147692147-147691970) | |
| 288-421, gnl|rheMac2|chrX (92040486-92040605) | |
| 288-421, gnl|rn3|chr20 (38682225-38682053) | |
| 288-421, gnl|rn3|chr20 (38682077-38682198) | |
| 288-421, gnl|tetNig1|chrUn_random (112151157-112151026) | |
| 288-421, gnl|tetNig1|chrUn_random (112151027-112151149) | |
| 288-421, gnl|xenTro1|scaffold_373 (656579-656452) | |
| 559-729, gnl|bosTau2|chr9 (18540414-18540244) | |
| 559-729, gnl|canFam2|chr12 (74939460-74939653) | |
| 559-729, gnl|canFam2|chr12 (74939646-74939479) | |
| 559-729, gnl|danRer3|chr20 (300450-300273) | |
| 559-729, gnl|fr1|chrUn (210804276-210804087) | |
| 559-729, gnl|galGal2|chr3 (62332876-62332677) | |
| 559-729, gnl|hg17|chr6 (116666794-116666987) | |
| 559-729, gnl|Hg17|chr6 (116666809-116666979) | |
| 559-729, gnl|hg17|chrX (92449336-92449488) | |
| 559-729, gnl|mm7|chr10 (34091132-34090939) | |
| 559-729, gnl|mm7|chr10 (34090946-34091113) | |
| 559-729, gnl|Mm7|chr10 (34091115-34090945) | |
| 559-729, gnl|monDom2|scaffold_0 (101331441-101331239) | |
| 559-729, gnl|panTro1|chr5 (119062628-119062821) | |
| 559-729, gnl|panTro1|chrX (95303759-95303911) | |
| 559-729, gnl|rheMac2|chr4 (147690156-147689963) | |
| 559-729, gnl|rheMac2|chrX (92040119-92040271) | |
| 559-729, gnl|rn3|chr20 (38675616-38675423) | |
| 559-729, gnl|rn3|chr20 (38675430-38675597) | |
| 559-729, gnl|xenTro1|scaffold_373 (652743-652563) | |
| 905-1044, gnl|bosTau2|chr10 (41274781-41274928) | |
| 905-1044, gnl|Hg17|chr6 (145070886-145070751) |
| Expressed library(ies): 5 entry(ies) | More info |
| Expressed library(ies): 5 entry(ies) | Help | Less info |
| sin (0.349895) | |
| lin (0.145603) | |
| pla (0.133672) | |
| nmm (0.132802) | |
| jej (0.0989218) |
| Expressed library(ies): 5 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| sin (0.349895) | |
| lin (0.145603) | |
| pla (0.133672) | |
| nmm (0.132802) | |
| jej (0.0989218) |