Non-Coding RNA Search

Ss1.1-Pig4-TMW8041A21.3

Sequence:


               
               GAGGAGGACAAATTTCCCTCCTTTATTCAACTATCCCGTTGATACTCCCCCCTCCCTCCA
CAGCTCAAGCCAGCGAGGGAGTGTTCAGCTGTATTACCAAATCAGGAAGATATAAGGTTT
ACAAATTGGCTAAAAATCATGGCTCTGTAGCCATTTTCAGAACCAAAATAACTTCACTGC
TGTTAATCTGCTTGTGTGACAGCATTCCAGGCCAGCCAGATGGCACTGCCTTGTCTGGAG
GCCTTGCTAGTCTCGAAGGACACACACACTTGCACACTGTTTGTGAGCCCTCCCACCCCC
ACGACCTCAGTAGTCGTAAGTCAAGTGTGTGGATCTCAAAGGGTGCAATTTATCTTTATA
CCGGAATACATTTCTATGGCTTCTTTCAGCTTACCCTCTTCACCCTATTTTTTCTTATCT
TGAATTGAGAGAAAGAAGAGTTAATCTTATACTCCATCAGAATATTTTCTACCGTAACTC
CAGATGCCATCAACATTTGAAGAGTCGAGGGAATCTGTTCTAATATCCTGTTTTTGACTA
CTGTGGGGGCAGGCTGGAGAGGATGATAGGGCTTGCCACACAGCTGATTGATTGGCTGTT
TTCTTTCACATGAGTCATCCCTCTTCGTCATGGCAAGGGGTTTCTTTCTCTTTTTCTTCC
TCCTTTGGGATCCTTGTGTATGAAGAGAAACACTTTAAATGACAAACCCAGACTCCAGGT
GCCTTGCAGAGGTCGAAGGCCAGCCAGGATTGCTGCTGCTGCTCCTGCCACCACCCCTTC
CACTGGCATGACGGAATGAAAGGATGCATGTCTCCACTTCCCGTCCCTCCTCCCACTTCC
TTCCCCGCCCGCCCCCGGTCTGTTCAACCCCCTTCCCTCATTTATTTCTGTTAAGTTGTG
CGAATTATTTTTAAACCATTTATCCTGTTTGTACGCAGGGTTTTTAAGAAGAAACAGTAC
AATGCAACGAGCAAATCCTTGCAGGGTGTGGGAGGCAAGGGGGAGGGGAGGACATGGAGA
AAAGTCCTTTAAACAAAATAGCAAAATACTGAACATGTGTAAAATCCTGTATCATTTATG
AAATATGTATAAAAAGCAATGTACCTTCTGGAACAATAAATACTTATTCAATTTTTGAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GAGGAGGACAAATTTCCCTCCTTTATTCAACTATCCCGTTGATACTCCCCCCTCCCTCCA
CAGCTCAAGCCAGCGAGGGAGTGTTCAGCTGTATTACCAAATCAGGAAGATATAAGGTTT
ACAAATTGGCTAAAAATCATGGCTCTGTAGCCATTTTCAGAACCAAAATAACTTCACTGC
TGTTAATCTGCTTGTGTGACAGCATTCCAGGCCAGCCAGATGGCACTGCCTTGTCTGGAG
GCCTTGCTAGTCTCGAAGGACACACACACTTGCACACTGTTTGTGAGCCCTCCCACCCCC
ACGACCTCAGTAGTCGTAAGTCAAGTGTGTGGATCTCAAAGGGTGCAATTTATCTTTATA
CCGGAATACATTTCTATGGCTTCTTTCAGCTTACCCTCTTCACCCTATTTTTTCTTATCT
TGAATTGAGAGAAAGAAGAGTTAATCTTATACTCCATCAGAATATTTTCTACCGTAACTC
CAGATGCCATCAACATTTGAAGAGTCGAGGGAATCTGTTCTAATATCCTGTTTTTGACTA
CTGTGGGGGCAGGCTGGAGAGGATGATAGGGCTTGCCACACAGCTGATTGATTGGCTGTT
TTCTTTCACATGAGTCATCCCTCTTCGTCATGGCAAGGGGTTTCTTTCTCTTTTTCTTCC
TCCTTTGGGATCCTTGTGTATGAAGAGAAACACTTTAAATGACAAACCCAGACTCCAGGT
GCCTTGCAGAGGTCGAAGGCCAGCCAGGATTGCTGCTGCTGCTCCTGCCACCACCCCTTC
CACTGGCATGACGGAATGAAAGGATGCATGTCTCCACTTCCCGTCCCTCCTCCCACTTCC
TTCCCCGCCCGCCCCCGGTCTGTTCAACCCCCTTCCCTCATTTATTTCTGTTAAGTTGTG
CGAATTATTTTTAAACCATTTATCCTGTTTGTACGCAGGGTTTTTAAGAAGAAACAGTAC
AATGCAACGAGCAAATCCTTGCAGGGTGTGGGAGGCAAGGGGGAGGGGAGGACATGGAGA
AAAGTCCTTTAAACAAAATAGCAAAATACTGAACATGTGTAAAATCCTGTATCATTTATG
AAATATGTATAAAAAGCAATGTACCTTCTGGAACAATAAATACTTATTCAATTTTTGAAA

Predicted RNA structure(s): 2 entry(ies)

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Predicted RNA structure(s): 2 entry(ies)

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               587-692, - strand, RNAz p=0.88307
               

               
               733-963, - strand, RNAz p=0.789997

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               587-692, - strand, RNAz p=0.88307
               

               
               733-963, - strand, RNAz p=0.789997

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               1-1139, gnl|bosTau2|chr28 (23837303-23838444)
               

               
               1-1139, gnl|Hg17|chr10 (74316327-74317458)
               

               
               1-1139, gnl|Mm7|chr10 (58966168-58965179)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-1139, gnl|bosTau2|chr28 (23837303-23838444)
               

               
               1-1139, gnl|Hg17|chr10 (74316327-74317458)
               

               
               1-1139, gnl|Mm7|chr10 (58966168-58965179)

Expressed library(ies): 6 entry(ies)

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Expressed library(ies): 6 entry(ies)

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               tbr (0.154178)
               

               
               pty (0.142714)
               

               
               lnt (0.142308)
               

               
               bla (0.124347)
               

               
               jca (0.11396)
               

               
               jej (0.0989218)

Expressed library(ies): 6 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               tbr (0.154178)
               

               
               pty (0.142714)
               

               
               lnt (0.142308)
               

               
               bla (0.124347)
               

               
               jca (0.11396)
               

               
               jej (0.0989218)

	587-692, - strand, RNAz p=0.88307
	733-963, - strand, RNAz p=0.789997

	1-1139, gnl\|bosTau2\|chr28 (23837303-23838444)
	1-1139, gnl\|Hg17\|chr10 (74316327-74317458)
	1-1139, gnl\|Mm7\|chr10 (58966168-58965179)

	tbr (0.154178)
	pty (0.142714)
	lnt (0.142308)
	bla (0.124347)
	jca (0.11396)
	jej (0.0989218)